Type |
Details |
Score |
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
284
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
433
 |
Fragment?: |
false |
|
•
•
•
•
•
|
UniProt Feature |
Begin: |
1 |
Description: |
Serine/threonine-protein kinase SMG1 |
Type: |
chain |
End: |
3658 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
335
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
96
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
59
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
frog, African clawed |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
frog, African clawed |
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; wild type |
Allele Type: |
Not Specified |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap XB150, BayGenomics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap XH737, BayGenomics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap XI478, BayGenomics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap XI470, BayGenomics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap OST7459, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap OST78758, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap OST308135, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap OST391154, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap OST439673, Lexicon Genetics |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap RRT449, BayGenomics |
Allele Type: |
Gene trapped |
Attribute String: |
Null/knockout, Reporter |
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap 37v-50, Yasumasa Ishida |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; endonuclease-mediated mutation 1, Cyagen Biosciences |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Null/knockout |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
210
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
118
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism that detects and degrades mRNAs containing premature translation termination codons. Protein SMG9 is a component of the SMG1C protein kinase complex (along with SMG1 and SMG8) which is recruited to stalled ribosomes. SMG8 and SMG9 suppress SMG1 kinase activity in the isolated SMG1 complex []. |
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap A071A03, German Gene Trap Consortium |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap AG0297, Wellcome Trust Sanger Institute |
Allele Type: |
Gene trapped |
Attribute String: |
Null/knockout, Reporter |
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap E215E05, German Gene Trap Consortium |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST10762D2, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST11538E8, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST11568E4, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST12360D3, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST12509B1, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST12506H10, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap A020A02, German Gene Trap Consortium |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap A057E04, German Gene Trap Consortium |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Strain |
Attribute String: |
congenic, gene trap, mutant strain |
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap AR0550, Wellcome Trust Sanger Institute |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap EUCE0199h08, Helmholtz Zentrum Muenchen GmbH |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap EUCJ00133a05, Helmholtz Zentrum Muenchen GmbH |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap 408B8, Centre for Modeling Human Disease |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap 407B8, Centre for Modeling Human Disease |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap 407A8, Centre for Modeling Human Disease |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap 519B10, Centre for Modeling Human Disease |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap 183B8, Centre for Modeling Human Disease |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST10062C7, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST13159G3, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST13301D3, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST13519G9, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST13620G2, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST14765C5, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST14779F2, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST14767F3, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST14848H7, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST14869E8, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST14925B6, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST14926C8, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST14857G10, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST14969E1, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST15000A5, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST15051F7, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST15050G6, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; gene trap IST15075E12, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; targeted mutation 1a, Wellcome Trust Sanger Institute |
Allele Type: |
Targeted |
Attribute String: |
Conditional ready, Null/knockout, Reporter |
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; targeted mutation 1a, Helmholtz Zentrum Muenchen GmbH |
Allele Type: |
Targeted |
Attribute String: |
Conditional ready, Null/knockout, Reporter |
|
•
•
•
•
•
|
Strain |
Attribute String: |
mutant strain, coisogenic, targeted mutation |
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; targeted mutation 2a, Wellcome Trust Sanger Institute |
Allele Type: |
Targeted |
Attribute String: |
Conditional ready, Null/knockout, Reporter |
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; targeted mutation 1b, Helmholtz Zentrum Muenchen GmbH |
Allele Type: |
Targeted |
Attribute String: |
Null/knockout, Reporter |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, targeted mutation |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, mutant strain, targeted mutation |
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; targeted mutation 1a, Mammalian Functional Genomics Centre |
Allele Type: |
Targeted |
Attribute String: |
Conditional ready, Reporter |
|
•
•
•
•
•
|
Allele |
Name: |
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; endonuclease-mediated mutation 1, GemPharmatech Co., Ltd |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Conditional ready, No functional change |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, mutant strain, endonuclease-mediated mutation |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Smg1/Smg1 |
Background: |
involves: 129P2/OlaHsd * C57BL/6 |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Smg1/Smg1 |
Background: |
B6.129P2-Smg1 |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Smg1/Smg1 |
Background: |
C57BL/6N-Smg1/Wtsi |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Smg1/Smg1<+> |
Background: |
involves: 129P2/OlaHsd * C57BL/6 |
Zygosity: |
ht |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Smg1/Smg1<+> |
Background: |
C57BL/6N-Smg1/Wtsi |
Zygosity: |
ht |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Yamashita A |
Year: |
2009 |
Journal: |
Genes Dev |
Title: |
SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay. |
Volume: |
23 |
Issue: |
9 |
Pages: |
1091-105 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yamashita A |
Year: |
2001 |
Journal: |
Genes Dev |
Title: |
Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay. |
Volume: |
15 |
Issue: |
17 |
Pages: |
2215-28 |
|
•
•
•
•
•
|
Publication |
First Author: |
Brown JA |
Year: |
2011 |
Journal: |
Mol Cell Biol |
Title: |
A novel role for hSMG-1 in stress granule formation. |
Volume: |
31 |
Issue: |
22 |
Pages: |
4417-29 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
This entry represents the N-terminal domain of SMG1, which is a member of the phosphoinositide 3 kinase-like kinase (PIKK) family. SMG1 associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay []. It also plays an important role in genotoxic stress responses to DNA damage []. |
|
•
•
•
•
•
|
Allele |
Name: |
deletion, Chr 7, Alea A Mills 4 |
Allele Type: |
Targeted |
Attribute String: |
Null/knockout |
|
•
•
•
•
•
|
Allele |
Name: |
duplication, Chr 7, Alea A Mills 5 |
Allele Type: |
Targeted |
|
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
520
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Strain |
Attribute String: |
congenic, deletion, mutant strain, targeted mutation |
|
•
•
•
•
•
|
Strain |
Attribute String: |
deletion, mutant stock, targeted mutation |
|
•
•
•
•
•
|
Publication |
First Author: |
Mitchell EJ |
Year: |
2020 |
Journal: |
Sci Rep |
Title: |
Drug-responsive autism phenotypes in the 16p11.2 deletion mouse model: a central role for gene-environment interactions. |
Volume: |
10 |
Issue: |
1 |
Pages: |
12303 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wang W |
Year: |
2018 |
Journal: |
J Neurosci |
Title: |
Chemogenetic Activation of Prefrontal Cortex Rescues Synaptic and Behavioral Deficits in a Mouse Model of 16p11.2 Deletion Syndrome. |
Volume: |
38 |
Issue: |
26 |
Pages: |
5939-5948 |
|
•
•
•
•
•
|
Publication |
First Author: |
Panzini CM |
Year: |
2017 |
Journal: |
J Neurochem |
Title: |
16p11.2 deletion syndrome mice perseverate with active coping response to acute stress - rescue by blocking 5-HT2A receptors. |
Volume: |
143 |
Issue: |
6 |
Pages: |
708-721 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tian D |
Year: |
2015 |
Journal: |
Nat Neurosci |
Title: |
Contribution of mGluR5 to pathophysiology in a mouse model of human chromosome 16p11.2 microdeletion. |
Volume: |
18 |
Issue: |
2 |
Pages: |
182-4 |
|
•
•
•
•
•
|
Publication |
First Author: |
Pucilowska J |
Year: |
2015 |
Journal: |
J Neurosci |
Title: |
The 16p11.2 deletion mouse model of autism exhibits altered cortical progenitor proliferation and brain cytoarchitecture linked to the ERK MAPK pathway. |
Volume: |
35 |
Issue: |
7 |
Pages: |
3190-200 |
|
•
•
•
•
•
|