Type |
Details |
Score |
Strain |
Attribute String: |
mutant strain, coisogenic, targeted mutation |
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•
•
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•
•
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Allele |
Name: |
SMG9 nonsense mediated mRNA decay factor; gene trap IST13177D9, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
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•
•
•
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•
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Allele |
Name: |
SMG9 nonsense mediated mRNA decay factor; gene trap IST13206E11, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
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•
•
•
•
•
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Allele |
Name: |
SMG9 nonsense mediated mRNA decay factor; gene trap IST14109C6, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
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•
•
•
•
•
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Allele |
Name: |
SMG9 nonsense mediated mRNA decay factor; gene trap IST14250B10, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
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•
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•
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Allele |
Name: |
SMG9 nonsense mediated mRNA decay factor; gene trap IST14862H4, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
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•
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Allele |
Name: |
SMG9 nonsense mediated mRNA decay factor; gene trap IST14906B1, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
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•
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Allele |
Name: |
SMG9 nonsense mediated mRNA decay factor; gene trap IST15034D10, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
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•
•
•
•
•
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Strain |
Attribute String: |
coisogenic, mutant strain, targeted mutation |
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•
•
•
•
•
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Strain |
Attribute String: |
coisogenic, targeted mutation |
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•
•
•
•
•
|
Genotype |
Symbol: |
Smg9/Smg9 |
Background: |
C57BL/6N-Smg9/Wtsi |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Smg9/Smg9 |
Background: |
C57BL/6-Smg9 |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
HT Experiment |
|
Experiment Type: |
RNA-Seq |
Study Type: |
WT vs. Mutant |
Source: |
GEO |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Smg9/Smg9<+> |
Background: |
C57BL/6NJ-Smg9/J |
Zygosity: |
ht |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Smg9/Smg9<+> |
Background: |
C57BL/6-Smg9 |
Zygosity: |
ht |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
991
 |
Fragment?: |
false |
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•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
271
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
SMG8 is involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. In humans, it is a component of the SMG1C complex composed of SMG1, SMG8 and SMG9 []. SMG-8 can recruit SMG-1 to the mRNA surveillance complex and can regulate the kinase activity of SMG-1 []. |
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•
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Protein Domain |
Type: |
Family |
Description: |
SMG8 and SMG9 are two subunits of the Smg-1 complex. They suppress Smg-1 kinase activity in the isolated Smg-1 complex, and are involved in nonsense-mediated mRNA decay (NMD) in both mammals and nematodes []. NMD is a surveillance mechanism that detects and degrades mRNAs containing premature translation termination codons. |
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Publication |
First Author: |
Gerhard DS |
Year: |
2004 |
Journal: |
Genome Res |
Title: |
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |
Volume: |
14 |
Issue: |
10B |
Pages: |
2121-7 |
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•
•
•
•
•
|
Publication |
First Author: |
Huttlin EL |
Year: |
2010 |
Journal: |
Cell |
Title: |
A tissue-specific atlas of mouse protein phosphorylation and expression. |
Volume: |
143 |
Issue: |
7 |
Pages: |
1174-89 |
|
•
•
•
•
•
|
Publication |
First Author: |
Church DM |
Year: |
2009 |
Journal: |
PLoS Biol |
Title: |
Lineage-specific biology revealed by a finished genome assembly of the mouse. |
Volume: |
7 |
Issue: |
5 |
Pages: |
e1000112 |
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•
•
•
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•
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