Type |
Details |
Score |
Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kawai J |
Year: |
2001 |
Journal: |
Nature |
Title: |
Functional annotation of a full-length mouse cDNA collection. |
Volume: |
409 |
Issue: |
6821 |
Pages: |
685-90 |
|
•
•
•
•
•
|
Publication |
First Author: |
Adams DJ |
Year: |
2024 |
Journal: |
Nature |
Title: |
Genetic determinants of micronucleus formation in vivo. |
Volume: |
627 |
Issue: |
8002 |
Pages: |
130-136 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zambrowicz BP |
Year: |
2003 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. |
Volume: |
100 |
Issue: |
24 |
Pages: |
14109-14 |
|
•
•
•
•
•
|
Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
|
Title: |
GemPharmatech Website. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Skarnes WC |
Year: |
2011 |
Journal: |
Nature |
Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
Volume: |
474 |
Issue: |
7351 |
Pages: |
337-42 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI) |
Year: |
2008 |
Journal: |
Database Download |
Title: |
Mouse Gene Trap Data Load from dbGSS |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
Year: |
2004 |
Journal: |
Database Release |
Title: |
Mouse T31 Radiation Hybrid Data Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Okazaki Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
563-73 |
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
|
Title: |
Annotation inferences using phylogenetic trees |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
|
|
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4457009 |
Assay Type: |
Western blot |
Annotation Date: |
2020-05-29 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1716828 |
|
Stage: |
TS28 |
Assay Id: |
MGI:6430616 |
Age: |
postnatal |
Image: |
8 |
|
Specimen Label: |
SOCS7 +/- |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4457009 |
Assay Type: |
Western blot |
Annotation Date: |
2020-05-29 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1716828 |
|
Stage: |
TS28 |
Assay Id: |
MGI:6430616 |
Age: |
postnatal |
Image: |
8 |
|
Specimen Label: |
SOCS7 +/+ |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4457009 |
Assay Type: |
Western blot |
Annotation Date: |
2020-05-29 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1716828 |
|
Stage: |
TS28 |
Assay Id: |
MGI:6430616 |
Age: |
postnatal |
Image: |
8 |
|
Specimen Label: |
SOCS7 -/- |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6430195 |
Assay Type: |
Western blot |
Annotation Date: |
2020-05-29 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1716828 |
|
Stage: |
TS28 |
Assay Id: |
MGI:6430617 |
Age: |
postnatal |
Image: |
8 |
|
Specimen Label: |
SOCS7 +/- |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6430195 |
Assay Type: |
Western blot |
Annotation Date: |
2020-05-29 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1716828 |
|
Stage: |
TS28 |
Assay Id: |
MGI:6430617 |
Age: |
postnatal |
Image: |
8 |
|
Specimen Label: |
SOCS7 +/+ |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6430195 |
Assay Type: |
Western blot |
Annotation Date: |
2020-05-29 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1716828 |
|
Stage: |
TS28 |
Assay Id: |
MGI:6430617 |
Age: |
postnatal |
Image: |
8 |
|
Specimen Label: |
SOCS7 -/- |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
Allele |
Name: |
suppressor of cytokine signaling 7; targeted mutation 1c, Wellcome Trust Sanger Institute |
Allele Type: |
Targeted |
Attribute String: |
Conditional ready |
|
•
•
•
•
•
|
Publication |
First Author: |
Yang R |
Year: |
2017 |
Journal: |
Sci Rep |
Title: |
p53 induces miR199a-3p to suppress SOCS7 for STAT3 activation and renal fibrosis in UUO. |
Volume: |
7 |
|
Pages: |
43409 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5749732 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2020-05-28 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1915528 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:6430465 |
Age: |
postnatal day 20 |
|
Note: |
A low percentage of wild type rod bipolar cells (Otx2+ and Prkca+) were detected in the inner half of the inner nuclear layer. |
Specimen Label: |
not shown SOCS7 Wt |
Detected: |
true |
Specimen Num: |
12 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5749732 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2020-05-28 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1915528 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:6430465 |
Age: |
postnatal day 20 |
|
Note: |
In the knockout retinas, a higher percentage of rod bipolar cells were ectopically localized at the inner half of the inner nuclear layer. |
Specimen Label: |
not shown SOCS7 Mut |
Detected: |
true |
Specimen Num: |
13 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6430205 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2020-05-28 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1915528 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:6430451 |
Age: |
postnatal day 20 |
|
Note: |
A low percentage of wild type rod bipolar cells (Otx2+ and Prkca+) were detected in the inner half of the inner nuclear layer. |
Specimen Label: |
not shown SOCS7 Wt |
Detected: |
true |
Specimen Num: |
13 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6430205 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2020-05-28 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1915528 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:6430451 |
Age: |
postnatal day 20 |
|
Note: |
In the knockout retinas, a higher percentage of rod bipolar cells were ectopically localized at the inner half of the inner nuclear layer. |
Specimen Label: |
not shown SOCS7 Mut |
Detected: |
true |
Specimen Num: |
14 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6195063 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2020-05-28 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1915728 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:6430500 |
Age: |
postnatal day 20 |
|
Note: |
Expression was detected in cone photoreceptors in the outer side of the outer nuclear layer. |
Specimen Label: |
not shown SOCS7 Wt |
Detected: |
true |
Specimen Num: |
16 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6195063 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2020-05-28 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1915728 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:6430500 |
Age: |
postnatal day 20 |
|
Note: |
The localization of cone photoreceptors was not disrupted in the knockout. |
Specimen Label: |
not shown SOCS7 Mut |
Detected: |
true |
Specimen Num: |
17 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
436
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Interaction Experiment |
Description: |
PTPN14 aggravates inflammation through promoting proteasomal degradation of SOCS7 in acute liver failure. |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
SOCS7 is a member of the suppressor of cytokine signaling family of proteins. SOCS7 functions in insulin signaling and glucose homeostasis through IRS1 ubiquitination and subsequent proteasomal degradation []. SOCS7 inhibits also prolactin, growth hormone and leptin signaling by preventing STAT3 and STAT5 activation, sequestering them in the cytoplasm and reducing their binding to DNA [].This entry represents the SH2 domain of SOCS7. |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
This entry represents the SOCS box domain of SOCS7.SOCS7 is a member of the suppressor of cytokine signaling family of proteins. SOCS7 functions in insulin signaling and glucose homeostasis through IRS1 ubiquitination and subsequent proteasomal degradation []. SOCS7 inhibits also prolactin, growth hormone and leptin signaling by preventing STAT3 and STAT5 activation, sequestering them in the cytoplasm and reducing their binding to DNA [].The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions [, ]. |
|
•
•
•
•
•
|
Publication |
First Author: |
Kamura T |
Year: |
1998 |
Journal: |
Genes Dev |
Title: |
The Elongin BC complex interacts with the conserved SOCS-box motif present in members of the SOCS, ras, WD-40 repeat, and ankyrin repeat families. |
Volume: |
12 |
Issue: |
24 |
Pages: |
3872-81 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bullock AN |
Year: |
2006 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Crystal structure of the SOCS2-elongin C-elongin B complex defines a prototypical SOCS box ubiquitin ligase. |
Volume: |
103 |
Issue: |
20 |
Pages: |
7637-42 |
|
•
•
•
•
•
|