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Search results 101 to 133 out of 133 for Taf4

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Type Details Score
Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:57747
     
First Author: MGI Genome Annotation Group and UniGene Staff
Year: 2015
Journal: Database Download
Title: MGI-UniGene Interconnection Effort
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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Publication
23350932 | J:219055
First Author: Bahat A
Year: 2013
Journal: Genes Cells
Title: TAF4b and TAF4 differentially regulate mouse embryonic stem cells maintenance and proliferation.
Volume: 18
Issue: 3
Pages: 225-37
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HT Experiment
E-GEOD-57712 | TAF4 promotes pre-initiation complex formation and HNF4A occupancy of regulatory elements required to activation post-natal gene expression programme in hepatocytes (RNA-seq)
Series Id: GSE57712
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: ArrayExpress
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Publication
12237304 | J:80202
First Author: Werten S
Year: 2002
Journal: J Biol Chem
Title: Crystal structure of a subcomplex of human transcription factor TFIID formed by TATA binding protein-associated factors hTAF4 (hTAF(II)135) and hTAF12 (hTAF(II)20).
Volume: 277
Issue: 47
Pages: 45502-9
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Protein Domain
IPR007900 | TAF4_C
Type: Domain
Description: Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of amultiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains. The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. TAF4 domain interacts with TAF12 and makes a novel histone-like heterodimer that binds DNA and has a core promoter function of a subset of genes [, , ].
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Publication
19635797 | -
First Author: Gazit K
Year: 2009
Journal: J Biol Chem
Title: TAF4/4b x TAF12 displays a unique mode of DNA binding and is required for core promoter function of a subset of genes.
Volume: 284
Issue: 39
Pages: 26286-96
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Protein Domain
IPR044964 | RCD1/SRO1-5
Type: Family
Description: This family represents plant-specific inactive ADP-ribosyltransferases that regulate oxidative stress, hormonal and developmental responses, including RCD1 (RADICAL-INDUCED CELL DEATH1) and the probable inactive poly [ADP-ribose]polymerases SRO (SIMILAR TO RCD) 1-5. RCD1 is required for embryogenesis, vegetative and reproductive development, and abiotic stress responses []. These proteins have an N-terminal WWE domain (present in several but not all members) followed by a poly(ADP-ribose) polymerase domain, and a C-terminal RCD1, SRO and TAF4 (RST) domain [, ]. RST is a protein-protein interaction domain suggested to be critical for the interaction with several, mostly plant-specific transcription factors [].
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Protein Domain
IPR003228 | TFIID_TAF12_dom
Type: Domain
Description: TFIID is one of several General Transcription Factors (GTFs), which also include TFIIA, TFIIB, TFIIE, TFIIF and TFIIH, that are involved in the accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. Human transcription initiation factor TFIID is composed of the TATA-binding protein (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [, ].TBP-associated factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TAF12 interacts with TAF4 and makes a novel histone-like heterodimer that binds DNA and has a core promoter function of a subset of genes [].This entry represents a domain found in TAF12.
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Publication
19548978 | -
First Author: Jaspers P
Year: 2009
Journal: Plant J
Title: Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors.
Volume: 60
Issue: 2
Pages: 268-79
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Publication
20226034 | -
 
First Author: Jaspers P
Year: 2010
Journal: BMC Genomics
Title: The RST and PARP-like domain containing SRO protein family: analysis of protein structure, function and conservation in land plants.
Volume: 11
Pages: 170
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Publication
29657132 | -
First Author: Bugge K
Year: 2018
Journal: Structure
Title: Structure of Radical-Induced Cell Death1 Hub Domain Reveals a Common αα-Scaffold for Disorder in Transcriptional Networks.
Volume: 26
Issue: 5
Pages: 734-746.e7
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Publication
7667268 | -
First Author: Hisatake K
Year: 1995
Journal: Proc Natl Acad Sci U S A
Title: Evolutionary conservation of human TATA-binding-polypeptide-associated factors TAFII31 and TAFII80 and interactions of TAFII80 with other TAFs and with general transcription factors.
Volume: 92
Issue: 18
Pages: 8195-9
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Protein
Q8VE65
Organism: Mus musculus/domesticus
Length: 161  
Fragment?: false
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Protein
E9QNT5
Organism: Mus musculus/domesticus
Length: 213  
Fragment?: false
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Protein
Q3UT56
Organism: Mus musculus/domesticus
Length: 162  
Fragment?: false
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Publication
10664584 | -
First Author: Green MR
Year: 2000
Journal: Trends Biochem Sci
Title: TBP-associated factors (TAFIIs): multiple, selective transcriptional mediators in common complexes.
Volume: 25
Issue: 2
Pages: 59-63
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Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
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Publication
11217851 | J:65060
First Author: Kawai J
Year: 2001
Journal: Nature
Title: Functional annotation of a full-length mouse cDNA collection.
Volume: 409
Issue: 6821
Pages: 685-90
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Publication
11042159 | J:68323
First Author: Carninci P
Year: 2000
Journal: Genome Res
Title: Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes.
Volume: 10
Issue: 10
Pages: 1617-30
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Publication
10349636 | J:80645
 
First Author: Carninci P
Year: 1999
Journal: Methods Enzymol
Title: High-efficiency full-length cDNA cloning.
Volume: 303
Pages: 19-44
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Publication
11076861 | J:68324
First Author: Shibata K
Year: 2000
Journal: Genome Res
Title: RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer.
Volume: 10
Issue: 11
Pages: 1757-71
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Publication
16141073 | -
First Author: Katayama S
Year: 2005
Journal: Science
Title: Antisense transcription in the mammalian transcriptome.
Volume: 309
Issue: 5740
Pages: 1564-6
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