| Type |
Details |
Score |
| Publication |
| First Author: |
Diez-Roux G |
| Year: |
2011 |
| Journal: |
PLoS Biol |
| Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
| Volume: |
9 |
| Issue: |
1 |
| Pages: |
e1000582 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
MGI Genome Annotation Group and UniGene Staff |
| Year: |
2015 |
| Journal: |
Database Download |
| Title: |
MGI-UniGene Interconnection Effort |
|
|
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•
•
•
•
•
|
| Publication |
| First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
| Year: |
2010 |
|
| Title: |
Annotation inferences using phylogenetic trees |
|
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•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
| Year: |
2000 |
| Journal: |
Database Release |
| Title: |
Entrez Gene Load |
|
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•
•
•
•
•
|
| Publication |
| First Author: |
Allen Institute for Brain Science |
| Year: |
2004 |
| Journal: |
Allen Institute |
| Title: |
Allen Brain Atlas: mouse riboprobes |
|
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•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2009 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
| Year: |
2010 |
| Journal: |
Database Download |
| Title: |
Consensus CDS project |
|
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•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Group |
| Year: |
2003 |
| Journal: |
Database Procedure |
| Title: |
Automatic Encodes (AutoE) Reference |
|
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•
•
•
•
•
|
| Publication |
| First Author: |
Bairoch A |
| Year: |
1999 |
| Journal: |
Database Release |
| Title: |
SWISS-PROT Annotated protein sequence database |
|
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•
•
•
•
•
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| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
|
| Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
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•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics |
| Year: |
2010 |
| Journal: |
Database Release |
| Title: |
Protein Ontology Association Load. |
|
|
|
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•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
|
| Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
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•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2009 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
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•
•
•
•
•
|
| HT Experiment |
| Series Id: |
GSE25775 |
| Experiment Type: |
transcription profiling by array |
| Study Type: |
WT vs. Mutant |
| Source: |
ArrayExpress |
|
•
•
•
•
•
|
| HT Experiment |
| Series Id: |
GSE25776 |
| Experiment Type: |
transcription profiling by array |
| Study Type: |
WT vs. Mutant |
| Source: |
ArrayExpress |
|
•
•
•
•
•
|
| HT Experiment |
|
| Experiment Type: |
transcription profiling by array |
| Study Type: |
WT vs. Mutant |
| Source: |
GEO |
|
•
•
•
•
•
|
| DO Term |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7580673 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2024-02-07 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1784128 |
| Pattern: |
Not Specified |
| Stage: |
TS28 |
| Assay Id: |
MGI:7580680 |
| Age: |
postnatal day 15 |
| Image: |
10A/C |
| Note: |
Coexpressed with Tdrd7 (about 10% of the TDRD7 protein was co-localized with Hspb1 mRNA). |
| Specimen Label: |
10A/C |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Domain |
| Description: |
TDRD7 belongs to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD7 together with TDRD1/MTR-1, TDRD5 and TDRD6 forms a ribonucleoprotein complex in the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs) involved in RNA processing for spermatogenesis. TDRD7 is functionally essential for the differentiation of germ cells [].TDRD7 contains three N-terminal LOTUS domains and three Tudor domain repeats at the C terminus. The LOTUS domain adopts the winged helix-turn-helix fold that may bind RNA [, ]. This entry represents the third LOTUS domain of TDRD7. |
|
•
•
•
•
•
|
| HT Experiment |
|
| Experiment Type: |
RNA-Seq |
| Study Type: |
WT vs. Mutant |
| Source: |
GEO |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Anantharaman V |
| Year: |
2010 |
| Journal: |
Biol Direct |
| Title: |
OST-HTH: a novel predicted RNA-binding domain. |
| Volume: |
5 |
|
| Pages: |
13 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Callebaut I |
| Year: |
2010 |
| Journal: |
Bioinformatics |
| Title: |
LOTUS, a new domain associated with small RNA pathways in the germline. |
| Volume: |
26 |
| Issue: |
9 |
| Pages: |
1140-4 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Dash S |
| Year: |
2015 |
| Journal: |
Dev Dyn |
| Title: |
Deficiency of the RNA binding protein caprin2 causes lens defects and features of Peters anomaly. |
| Volume: |
244 |
| Issue: |
10 |
| Pages: |
1313-27 |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
1086
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
1119
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Terrell AM |
| Year: |
2015 |
| Journal: |
Exp Eye Res |
| Title: |
Molecular characterization of mouse lens epithelial cell lines and their suitability to study RNA granules and cataract associated genes. |
| Volume: |
131 |
|
| Pages: |
42-55 |
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