Type |
Details |
Score |
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
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Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
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•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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•
•
•
•
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UniProt Feature |
Begin: |
1 |
Description: |
Peroxynitrite isomerase THAP4 |
Type: |
chain |
End: |
569 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
182
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
165
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
569
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
379
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
31
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Shepard W |
Year: |
2007 |
Journal: |
J Bacteriol |
Title: |
The crystal structure of Rv0813c from Mycobacterium tuberculosis reveals a new family of fatty acid-binding protein-like proteins in bacteria. |
Volume: |
189 |
Issue: |
5 |
Pages: |
1899-904 |
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•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
Nitrobindins (Nbs), constituting a heme-protein family spanning from bacteria to Homo sapiens, display an all-β-barrel structural organization. Proteins containing this domain are putatively related to fatty acid-binding proteins (FABPs) [].This domain can be found in THAP4 from mammals and At1g79260 from Arabidopsis. THAP4 catalyzes the heme-based conversion of peroxynitrite into nitrate/NO3- in vitro []. At1g79260 is a nitrophorin-like heme-binding protein that may reversibly bind nitric oxide (NO) and be involved in NO transport []. This entry also includes the β-barrel domain of Caenorhabditis elegans protein male abnormal 7 (Mab-7) which plays an important role in determining body shape and sensory ray morphology []. |
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•
•
•
•
•
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Protein Domain |
Type: |
Family |
Description: |
Nitrobindins (Nbs) are evolutionary conserved all-β-barrel heme-proteins displaying a highly solvent-exposed heme-Fe(III) atom. Mycobacterium tuberculosis Nb (Mt-Nb(III) and the C terminus of Homo sapiens Nb (Hs-Nb(III)) share this β-barrel structure, suggesting that Nb may act as a sensor possibly modulating the THAP4 transcriptional activity residing in the N-terminal region []. Ferric nitrobindin-like proteins that lack the conserved His residue which binds heme iron are also included in the Nb family.Mt-Nb(III) is a peroxynitrite isomerase that converts peroxynitrite to nitrate. It may be required to scavenge reactive nitrogen and oxygen species produced by the host during the immunity response []. In humans THAP4 catalyses the heme-based conversion of peroxynitrite into nitrate/NO3 in vitro []. At1g79260 is a nitrophorin-like heme-binding protein that may reversibly bind nitric oxide (NO) and be involved in NO transport []. This entry also includes Caenorhabditis elegans protein male abnormal 7 (Mab-7) which plays an important role in determining body shape and sensory ray morphology []. |
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•
•
•
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•
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Publication |
First Author: |
Bianchetti CM |
Year: |
2010 |
Journal: |
Proteins |
Title: |
The structure and NO binding properties of the nitrophorin-like heme-binding protein from Arabidopsis thaliana gene locus At1g79260.1. |
Volume: |
78 |
Issue: |
4 |
Pages: |
917-31 |
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•
•
•
•
•
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Publication |
First Author: |
De Simone G |
Year: |
2018 |
Journal: |
FEBS Open Bio |
Title: |
Human nitrobindin: the first example of an all-β-barrel ferric heme-protein that catalyzes peroxynitrite detoxification. |
Volume: |
8 |
Issue: |
12 |
Pages: |
2002-2010 |
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•
•
•
•
•
|
Publication |
First Author: |
Tsang SW |
Year: |
2007 |
Journal: |
Dev Biol |
Title: |
mab-7 encodes a novel transmembrane protein that orchestrates sensory ray morphogenesis in C. elegans. |
Volume: |
312 |
Issue: |
1 |
Pages: |
353-66 |
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•
•
•
•
•
|
Publication |
First Author: |
De Simone G |
Year: |
2020 |
Journal: |
Antioxid Redox Signal |
Title: |
Mycobacterial and Human Nitrobindins: Structure and Function. |
Volume: |
33 |
Issue: |
4 |
Pages: |
229-246 |
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•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
This entry includes the Nitrobindin family members mostly from bacteria and plants. Mycobacterium tuberculosis Nb (Mt-Nb(III) is a peroxynitrite isomerase, which is a heme-binding protein able to scavenge peroxynitrite and to protect free L-tyrosine against peroxynitrite-mediated nitration, by acting as a peroxynitrite isomerase that converts peroxynitrite to nitrate []. This entry also includes ferric nitrobindin-like protein, lacks the conserved His residue that binds heme iron.Nitrobindins (Nbs) are evolutionary conserved all-β-barrel heme-proteins displaying a highly solvent-exposed heme-Fe(III) atom. Mycobacterium tuberculosis Nb (Mt-Nb(III) and the C terminus of Homo sapiens Nb (Hs-Nb(III)) share this β-barrel structure, suggesting that Nb may act as a sensor possibly modulating the THAP4 transcriptional activity residing in the N-terminal region []. Ferric nitrobindin-like proteins that lack the conserved His residue which binds heme iron are also included in the Nb family. |
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Publication |
First Author: |
Gerhard DS |
Year: |
2004 |
Journal: |
Genome Res |
Title: |
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |
Volume: |
14 |
Issue: |
10B |
Pages: |
2121-7 |
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•
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Publication |
First Author: |
Huttlin EL |
Year: |
2010 |
Journal: |
Cell |
Title: |
A tissue-specific atlas of mouse protein phosphorylation and expression. |
Volume: |
143 |
Issue: |
7 |
Pages: |
1174-89 |
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•
•
•
•
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Publication |
First Author: |
Church DM |
Year: |
2009 |
Journal: |
PLoS Biol |
Title: |
Lineage-specific biology revealed by a finished genome assembly of the mouse. |
Volume: |
7 |
Issue: |
5 |
Pages: |
e1000112 |
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