Type |
Details |
Score |
Gene |
Type: |
gene |
Organism: |
chimpanzee |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
cattle |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
chicken |
|
•
•
•
•
•
|
Gene |
Type: |
gene |
Organism: |
macaque, rhesus |
|
•
•
•
•
•
|
Publication |
First Author: |
Kumagai A |
Year: |
2006 |
Journal: |
Cell |
Title: |
TopBP1 activates the ATR-ATRIP complex. |
Volume: |
124 |
Issue: |
5 |
Pages: |
943-55 |
|
•
•
•
•
•
|
Publication |
First Author: |
Liu K |
Year: |
2017 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Mutant p53 perturbs DNA replication checkpoint control through TopBP1 and Treslin. |
Volume: |
114 |
Issue: |
19 |
Pages: |
E3766-E3775 |
|
•
•
•
•
•
|
Interaction Experiment |
Description: |
Regulation of TopBP1 oligomerization by Akt/PKB for cell survival. |
|
•
•
•
•
•
|
Publication |
First Author: |
Kumagai A |
Year: |
2010 |
Journal: |
Cell |
Title: |
Treslin collaborates with TopBP1 in triggering the initiation of DNA replication. |
Volume: |
140 |
Issue: |
3 |
Pages: |
349-59 |
|
•
•
•
•
•
|
Publication |
First Author: |
Cescutti R |
Year: |
2010 |
Journal: |
EMBO J |
Title: |
TopBP1 functions with 53BP1 in the G1 DNA damage checkpoint. |
Volume: |
29 |
Issue: |
21 |
Pages: |
3723-32 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1515
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Cotta-Ramusino C |
Year: |
2011 |
Journal: |
Science |
Title: |
A DNA damage response screen identifies RHINO, a 9-1-1 and TopBP1 interacting protein required for ATR signaling. |
Volume: |
332 |
Issue: |
6035 |
Pages: |
1313-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Reini K |
Year: |
2004 |
Journal: |
Chromosoma |
Title: |
TopBP1 localises to centrosomes in mitosis and to chromosome cores in meiosis. |
Volume: |
112 |
Issue: |
7 |
Pages: |
323-30 |
|
•
•
•
•
•
|
Publication |
First Author: |
Sjøttem E |
Year: |
2007 |
Journal: |
Nucleic Acids Res |
Title: |
The ePHD protein SPBP interacts with TopBP1 and together they co-operate to stimulate Ets1-mediated transcription. |
Volume: |
35 |
Issue: |
19 |
Pages: |
6648-62 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ueda S |
Year: |
2012 |
Journal: |
Genes Cells |
Title: |
Two serine phosphorylation sites in the C-terminus of Rad9 are critical for 9-1-1 binding to TopBP1 and activation of the DNA damage checkpoint response in HeLa cells. |
Volume: |
17 |
Issue: |
10 |
Pages: |
807-16 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
131
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Kumagai A |
Year: |
2011 |
Journal: |
J Cell Biol |
Title: |
Direct regulation of Treslin by cyclin-dependent kinase is essential for the onset of DNA replication. |
Volume: |
193 |
Issue: |
6 |
Pages: |
995-1007 |
|
•
•
•
•
•
|
Publication |
First Author: |
Leung CC |
Year: |
2010 |
Journal: |
Protein Sci |
Title: |
Insights from the crystal structure of the sixth BRCT domain of topoisomerase IIbeta binding protein 1. |
Volume: |
19 |
Issue: |
1 |
Pages: |
162-7 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
Treslin, a TopBP1-interacting protein, is necessary for DNA replication in vertebrates []. Prior to the initiation of DNA replication, treslin associates with TopBP1 in a Cdk2-dependent manner []. The proteins then collaborate in the Cdk2-mediated loading of Cdc45 onto replication origins [].Treslin is also an important checkpoint regulator, and is required to prevent mitotic entry after treatment with ionizing radiation []. |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
TopBP1, also termed DNA topoisomerase II-beta-binding protein 1, functions in DNA replication and damage response. It binds double-stranded DNA breaks and nicks as well as single-stranded DNA []. It has been shown to activate the ATR-ATRIP complex []. TopBP1 contains six copies of BRCT domain. The entry corresponds to the first BRCT domain, which is a protein-protein binding module []. |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
235
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
235
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
129
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Kim JW |
Year: |
2010 |
Journal: |
Int J Oncol |
Title: |
Involvement of C12orf32 overexpression in breast carcinogenesis. |
Volume: |
37 |
Issue: |
4 |
Pages: |
861-7 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
This entry represents Rad9, Rad1, Hus1-interacting nuclear orphan protein 1 (RHINO or RHNO1), which plays a role in DNA damage response (DDR) signalling upon genotoxic stresses such as ionizing radiation (IR) during the S phase []. RHNO1 is recruited to sites of DNA damage through interaction with the Rad9-Rad1-Hus1 (9-1-1) complex and ATR activator TopBP1. It plays a role in ATR-mediated activation of Chk1 driven by TopBP1 and 9-1-1 []. It is involved in mammary carcinogenesis []. |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1889
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
718
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
968
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
968
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
409
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Sansam CL |
Year: |
2010 |
Journal: |
Genes Dev |
Title: |
A vertebrate gene, ticrr, is an essential checkpoint and replication regulator. |
Volume: |
24 |
Issue: |
2 |
Pages: |
183-94 |
|
•
•
•
•
•
|
Publication |
First Author: |
Herold S |
Year: |
2002 |
Journal: |
Mol Cell |
Title: |
Negative regulation of the mammalian UV response by Myc through association with Miz-1. |
Volume: |
10 |
Issue: |
3 |
Pages: |
509-21 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
This entry includes DNA damage checkpoint proteins Rad9. Rad9 is required for transient cell-cycle arrests and transcriptional induction of DNA repair in response to DNA damage []. It is worth noting that this entry including the mamalian Rad9, which is homologous to the fission yeast Rad9 and the budding yeast Ddc1. Members of this family do not share the sequence homology with the budding yeast Rad9.Rad9 forms a complex with Hus1 and Rad1, called 9-1-1 complex. In human, 9-1-1 binds to TopBP1 and activates the ATR-Chk1 checkpoint pathway []. Rad9 also shows 3'-5' exonuclease activity []. Besides its function in the 9-1-1 complex, Rad9 can act as a transcriptional factor, participate in immunoglobulin classswitch recombination []. Aberrant Rad9 expression has been associated with prostate, breast, lung, skin, thyroid, and gastric cancers []. |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhang B |
Year: |
2023 |
Journal: |
Nucleic Acids Res |
Title: |
ADAR1 links R-loop homeostasis to ATR activation in replication stress response. |
Volume: |
51 |
Issue: |
21 |
Pages: |
11668-11687 |
|
•
•
•
•
•
|
Publication |
First Author: |
Vélez-Cruz R |
Year: |
2016 |
Journal: |
Genes Dev |
Title: |
RB localizes to DNA double-strand breaks and promotes DNA end resection and homologous recombination through the recruitment of BRG1. |
Volume: |
30 |
Issue: |
22 |
Pages: |
2500-2512 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ma S |
Year: |
2022 |
Journal: |
Cancer Lett |
Title: |
Disrupting PHF8-TOPBP1 connection elicits a breast tumor-specific vulnerability to chemotherapeutics. |
Volume: |
530 |
|
Pages: |
29-44 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
389
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
403
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
403
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
366
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Broustas CG |
Year: |
2012 |
Journal: |
J Cell Biochem |
Title: |
Contributions of Rad9 to tumorigenesis. |
Volume: |
113 |
Issue: |
3 |
Pages: |
742-51 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bessho T |
Year: |
2000 |
Journal: |
J Biol Chem |
Title: |
Human DNA damage checkpoint protein hRAD9 is a 3' to 5' exonuclease. |
Volume: |
275 |
Issue: |
11 |
Pages: |
7451-4 |
|
•
•
•
•
•
|
Publication |
First Author: |
An L |
Year: |
2010 |
Journal: |
J Biol Chem |
Title: |
Rad9 is required for B cell proliferation and immunoglobulin class switch recombination. |
Volume: |
285 |
Issue: |
46 |
Pages: |
35267-73 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
92
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
144
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
73
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
64
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
80
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
122
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Vialard JE |
Year: |
1998 |
Journal: |
EMBO J |
Title: |
The budding yeast Rad9 checkpoint protein is subjected to Mec1/Tel1-dependent hyperphosphorylation and interacts with Rad53 after DNA damage. |
Volume: |
17 |
Issue: |
19 |
Pages: |
5679-88 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
This entry represents the DNA damage checkpoint protein Rad9 and its homologue in budding yeast, Ddc1. Rad9 forms a complex with Hus1 and Rad1 (called 9-1-1 complex). Ddc1 forms a similar complex with Mec1 and Rad17. Structurally, the 9-1-1 / Ddc1-Mec3-Rad17 complex is similar to the PCNA complex, which forms trimeric ring-shaped clamps. The 9-1-1 / Ddc1-Mec3-Rad17 complex plays a role in checkpoint activation that permits DNA-repair pathways to prevent cell cycle progression in response to DNA damage and replication stress [, ].In humans, 9-1-1 binds to TopBP1 and activates the ATR-Chk1 checkpoint pathway []. Besides its function in the 9-1-1 complex, Rad9 can also act as a transcriptional factor and participate in immunoglobulin class switch recombination []. It also shows 3'-5' exonuclease activity []. Aberrant Rad9 expression has been associated with prostate, breast, lung, skin, thyroid, and gastric cancers [].In budding yeast, Ddc1 can activate Mec1 (the principal checkpoint protein kinase, human ATR homologue) in G1 phase. In G2 phase, Ddc1 can either activate Mec1 directly or recruit Dpb11 (the orthologue of human TopBP1) and subsequently activate Mec1 []. Ddc1 does not have DNA exonuclease function [].It is worth noting that the Rad9 proteins referred to in this entry are the mammalian and fission yeast homologues of budding yeast Ddc1. Members of this family do not share the sequence homology another DNA damage-dependent checkpoint protein from budding yeast, confusingly also called Rad9. |
|
•
•
•
•
•
|
Publication |
First Author: |
Lyndaker AM |
Year: |
2013 |
Journal: |
PLoS Genet |
Title: |
Conditional inactivation of the DNA damage response gene Hus1 in mouse testis reveals separable roles for components of the RAD9-RAD1-HUS1 complex in meiotic chromosome maintenance. |
Volume: |
9 |
Issue: |
2 |
Pages: |
e1003320 |
|
•
•
•
•
•
|
Publication |
First Author: |
Navadgi-Patil VM |
Year: |
2009 |
Journal: |
Mol Cell |
Title: |
The unstructured C-terminal tail of the 9-1-1 clamp subunit Ddc1 activates Mec1/ATR via two distinct mechanisms. |
Volume: |
36 |
Issue: |
5 |
Pages: |
743-53 |
|
•
•
•
•
•
|
Publication |
First Author: |
Longhese MP |
Year: |
1997 |
Journal: |
EMBO J |
Title: |
The novel DNA damage checkpoint protein ddc1p is phosphorylated periodically during the cell cycle and in response to DNA damage in budding yeast. |
Volume: |
16 |
Issue: |
17 |
Pages: |
5216-26 |
|
•
•
•
•
•
|
Publication |
First Author: |
Eichinger CS |
Year: |
2011 |
Journal: |
Trends Biochem Sci |
Title: |
9-1-1: PCNA's specialized cousin. |
Volume: |
36 |
Issue: |
11 |
Pages: |
563-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Majka J |
Year: |
2003 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Yeast Rad17/Mec3/Ddc1: a sliding clamp for the DNA damage checkpoint. |
Volume: |
100 |
Issue: |
5 |
Pages: |
2249-54 |
|
•
•
•
•
•
|