| Type |
Details |
Score |
| GXD Expression |
|
| Assay Type: |
In situ reporter (knock in) |
| Annotation Date: |
2021-04-16 |
| Strength: |
Present |
| Sex: |
Male |
| Emaps: |
EMAPS:1778728 |
| Pattern: |
Not Specified |
| Stage: |
TS28 |
| Assay Id: |
MGI:6691064 |
| Age: |
postnatal adult |
| Image: |
TCP_2459980 |
|
| Specimen Label: |
TCP_2459980 |
| Detected: |
true |
| Specimen Num: |
6 |
|
•
•
•
•
•
|
| GXD Expression |
|
| Assay Type: |
In situ reporter (knock in) |
| Annotation Date: |
2021-04-16 |
| Strength: |
Present |
| Sex: |
Female |
| Emaps: |
EMAPS:1672828 |
| Pattern: |
Not Specified |
| Stage: |
TS28 |
| Assay Id: |
MGI:6691064 |
| Age: |
postnatal adult |
| Image: |
TCP_2459983 |
|
| Specimen Label: |
TCP_2459983 |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
|
| Assay Type: |
In situ reporter (knock in) |
| Annotation Date: |
2021-04-16 |
| Strength: |
Present |
| Sex: |
Female |
| Emaps: |
EMAPS:1672828 |
| Pattern: |
Not Specified |
| Stage: |
TS28 |
| Assay Id: |
MGI:6691064 |
| Age: |
postnatal adult |
| Image: |
TCP_2459984 |
|
| Specimen Label: |
TCP_2459984 |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
|
| Assay Type: |
In situ reporter (knock in) |
| Annotation Date: |
2021-04-16 |
| Strength: |
Present |
| Sex: |
Male |
| Emaps: |
EMAPS:3284528 |
| Pattern: |
Not Specified |
| Stage: |
TS28 |
| Assay Id: |
MGI:6691064 |
| Age: |
postnatal adult |
| Image: |
TCP_2459981 |
|
| Specimen Label: |
TCP_2459981 |
| Detected: |
true |
| Specimen Num: |
7 |
|
•
•
•
•
•
|
| GXD Expression |
|
| Assay Type: |
In situ reporter (knock in) |
| Annotation Date: |
2021-04-16 |
| Strength: |
Present |
| Sex: |
Male |
| Emaps: |
EMAPS:3284528 |
| Pattern: |
Not Specified |
| Stage: |
TS28 |
| Assay Id: |
MGI:6691064 |
| Age: |
postnatal adult |
| Image: |
TCP_2459982 |
|
| Specimen Label: |
TCP_2459982 |
| Detected: |
true |
| Specimen Num: |
8 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528979 |
| Assay Type: |
Immunohistochemistry |
| Annotation Date: |
2023-09-21 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1647015 |
| Pattern: |
Regionally restricted |
| Stage: |
TS15 |
| Assay Id: |
MGI:7529370 |
| Age: |
embryonic day 9.5 |
| Image: |
5D |
| Note: |
Expression was enriched in neuroepithelium. |
| Specimen Label: |
5D |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528979 |
| Assay Type: |
Immunohistochemistry |
| Annotation Date: |
2023-09-21 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1647017 |
| Pattern: |
Regionally restricted |
| Stage: |
TS17 |
| Assay Id: |
MGI:7529370 |
| Age: |
embryonic day 10.5 |
| Image: |
6D |
| Note: |
Expression was enriched in neuroepithelium. |
| Specimen Label: |
6D |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528816 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-20 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1603913 |
| Pattern: |
Ubiquitous |
| Stage: |
TS13 |
| Assay Id: |
MGI:7529107 |
| Age: |
embryonic day 8.25-8.75 |
| Image: |
1A |
|
| Specimen Label: |
1A |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528816 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-20 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1603915 |
| Pattern: |
Ubiquitous |
| Stage: |
TS15 |
| Assay Id: |
MGI:7529107 |
| Age: |
embryonic day 9.5 |
| Image: |
1B |
|
| Specimen Label: |
1B |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528816 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-20 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1603917 |
| Pattern: |
Ubiquitous |
| Stage: |
TS17 |
| Assay Id: |
MGI:7529107 |
| Age: |
embryonic day 10.5 |
| Image: |
2A |
|
| Specimen Label: |
2A |
| Detected: |
true |
| Specimen Num: |
3 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528816 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-20 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1603917 |
| Pattern: |
Ubiquitous |
| Stage: |
TS17 |
| Assay Id: |
MGI:7529107 |
| Age: |
embryonic day 10.5 |
| Image: |
2B |
|
| Specimen Label: |
2B |
| Detected: |
true |
| Specimen Num: |
4 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528816 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-20 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1603919 |
| Pattern: |
Ubiquitous |
| Stage: |
TS19 |
| Assay Id: |
MGI:7529107 |
| Age: |
embryonic day 11.5 |
| Image: |
3A |
|
| Specimen Label: |
3A |
| Detected: |
true |
| Specimen Num: |
5 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528816 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-20 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1603919 |
| Pattern: |
Ubiquitous |
| Stage: |
TS19 |
| Assay Id: |
MGI:7529107 |
| Age: |
embryonic day 11.5 |
| Image: |
3B |
|
| Specimen Label: |
3B |
| Detected: |
true |
| Specimen Num: |
6 |
|
•
•
•
•
•
|
| GXD Expression |
|
| Assay Type: |
In situ reporter (knock in) |
| Annotation Date: |
2023-09-20 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1603913 |
| Pattern: |
Not Specified |
| Stage: |
TS13 |
| Assay Id: |
MGI:7529145 |
| Age: |
embryonic day 8.5 |
| Image: |
4E E8.5 left |
|
| Specimen Label: |
4E E8.5 left |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
|
| Assay Type: |
In situ reporter (knock in) |
| Annotation Date: |
2023-09-20 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1603913 |
| Pattern: |
Not Specified |
| Stage: |
TS13 |
| Assay Id: |
MGI:7529145 |
| Age: |
embryonic day 8.5 |
| Image: |
4E E8.5 right |
|
| Specimen Label: |
4E E8.5 right |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
|
| Assay Type: |
In situ reporter (knock in) |
| Annotation Date: |
2023-09-20 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:3185817 |
| Pattern: |
Regionally restricted |
| Stage: |
TS17 |
| Assay Id: |
MGI:7529145 |
| Age: |
embryonic day 10.5 |
| Image: |
4F |
| Note: |
Expression was enriched in surface cephalic epithelium. |
| Specimen Label: |
4F |
| Detected: |
true |
| Specimen Num: |
7 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528979 |
| Assay Type: |
Immunohistochemistry |
| Annotation Date: |
2023-09-21 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:3185815 |
| Pattern: |
Regionally restricted |
| Stage: |
TS15 |
| Assay Id: |
MGI:7529370 |
| Age: |
embryonic day 9.5 |
| Image: |
5D |
| Note: |
Expression was enriched in surface cephalic epithelium. |
| Specimen Label: |
5D |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528979 |
| Assay Type: |
Immunohistochemistry |
| Annotation Date: |
2023-09-21 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:3185817 |
| Pattern: |
Regionally restricted |
| Stage: |
TS17 |
| Assay Id: |
MGI:7529370 |
| Age: |
embryonic day 10.5 |
| Image: |
6D |
| Note: |
Expression was enriched in surface cephalic epithelium. |
| Specimen Label: |
6D |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528816 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-20 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1638217 |
| Pattern: |
Regionally restricted |
| Stage: |
TS17 |
| Assay Id: |
MGI:7529107 |
| Age: |
embryonic day 10.5 |
| Image: |
2B |
| Note: |
Expression was highest in the most anterior edge of the mandibular process. |
| Specimen Label: |
2B |
| Detected: |
true |
| Specimen Num: |
4 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528816 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-20 |
| Strength: |
Strong |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:3273213 |
| Pattern: |
Widespread |
| Stage: |
TS13 |
| Assay Id: |
MGI:7529107 |
| Age: |
embryonic day 8.25-8.75 |
| Image: |
1A |
| Note: |
High enriched expression was detected in the neural folds along the entirety of the dorsal anterior-posterior axis. |
| Specimen Label: |
1A |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528816 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-20 |
| Strength: |
Strong |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1627215 |
| Pattern: |
Not Specified |
| Stage: |
TS15 |
| Assay Id: |
MGI:7529107 |
| Age: |
embryonic day 9.5 |
| Image: |
1B |
|
| Specimen Label: |
1B |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528816 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-20 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1627217 |
| Pattern: |
Regionally restricted |
| Stage: |
TS17 |
| Assay Id: |
MGI:7529107 |
| Age: |
embryonic day 10.5 |
| Image: |
2B |
| Note: |
Expression was highest in the posterior edge with lower uniform expression seen throughout the rest of the arch. |
| Specimen Label: |
2B |
| Detected: |
true |
| Specimen Num: |
4 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528816 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-20 |
| Strength: |
Weak |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1627219 |
| Pattern: |
Not Specified |
| Stage: |
TS19 |
| Assay Id: |
MGI:7529107 |
| Age: |
embryonic day 11.5 |
| Image: |
3B |
|
| Specimen Label: |
3B |
| Detected: |
true |
| Specimen Num: |
6 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528816 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-20 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1677917 |
| Pattern: |
Regionally restricted |
| Stage: |
TS17 |
| Assay Id: |
MGI:7529107 |
| Age: |
embryonic day 10.5 |
| Image: |
2A |
| Note: |
Expression in the emerging hindlimb is most apparent at the most distal tip with reduced expression proximally. |
| Specimen Label: |
2A |
| Detected: |
true |
| Specimen Num: |
3 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528816 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-20 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1677919 |
| Pattern: |
Regionally restricted |
| Stage: |
TS19 |
| Assay Id: |
MGI:7529107 |
| Age: |
embryonic day 11.5 |
| Image: |
3A |
| Note: |
Expression appeared highest distally, with attenuated signal at the core of the limb buds. |
| Specimen Label: |
3A |
| Detected: |
true |
| Specimen Num: |
5 |
|
•
•
•
•
•
|
| GXD Expression |
|
| Assay Type: |
In situ reporter (knock in) |
| Annotation Date: |
2021-04-16 |
| Strength: |
Present |
| Sex: |
Female |
| Emaps: |
EMAPS:1757728 |
| Pattern: |
Not Specified |
| Stage: |
TS28 |
| Assay Id: |
MGI:6691064 |
| Age: |
postnatal adult |
| Image: |
TCP_2459985 |
|
| Specimen Label: |
TCP_2459985 |
| Detected: |
true |
| Specimen Num: |
3 |
|
•
•
•
•
•
|
| GXD Expression |
|
| Assay Type: |
In situ reporter (knock in) |
| Annotation Date: |
2021-04-16 |
| Strength: |
Present |
| Sex: |
Female |
| Emaps: |
EMAPS:1757728 |
| Pattern: |
Not Specified |
| Stage: |
TS28 |
| Assay Id: |
MGI:6691064 |
| Age: |
postnatal adult |
| Image: |
TCP_2459986 |
|
| Specimen Label: |
TCP_2459986 |
| Detected: |
true |
| Specimen Num: |
4 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528816 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-20 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1680517 |
| Pattern: |
Regionally restricted |
| Stage: |
TS17 |
| Assay Id: |
MGI:7529107 |
| Age: |
embryonic day 10.5 |
| Image: |
2B |
| Note: |
Expression was highest at the rim of the nasal pit perimeter. |
| Specimen Label: |
2B |
| Detected: |
true |
| Specimen Num: |
4 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528816 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-20 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1680519 |
| Pattern: |
Regionally restricted |
| Stage: |
TS19 |
| Assay Id: |
MGI:7529107 |
| Age: |
embryonic day 11.5 |
| Image: |
3B |
| Note: |
Expression was highest in the lateral edges. |
| Specimen Label: |
3B |
| Detected: |
true |
| Specimen Num: |
6 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528816 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-20 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1638817 |
| Pattern: |
Regionally restricted |
| Stage: |
TS17 |
| Assay Id: |
MGI:7529107 |
| Age: |
embryonic day 10.5 |
| Image: |
2B |
| Note: |
Expression was highest in the most posterior edge of the maxillary process. |
| Specimen Label: |
2B |
| Detected: |
true |
| Specimen Num: |
4 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7528816 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-20 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1638819 |
| Pattern: |
Regionally restricted |
| Stage: |
TS19 |
| Assay Id: |
MGI:7529107 |
| Age: |
embryonic day 11.5 |
| Image: |
3B |
| Note: |
Expression was highest in the lateral edges. |
| Specimen Label: |
3B |
| Detected: |
true |
| Specimen Num: |
6 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ko MS |
| Year: |
1998 |
| Journal: |
Hum Mol Genet |
| Title: |
Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. |
| Volume: |
7 |
| Issue: |
12 |
| Pages: |
1967-78 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
The Jackson Laboratory DNA Panel Mapping Resource |
| Year: |
1999 |
| Journal: |
Database Release |
| Title: |
JAX Interspecific Backcross BSS and BSB Public Mapping Data |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mootha VK |
| Year: |
2003 |
| Journal: |
Cell |
| Title: |
Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. |
| Volume: |
115 |
| Issue: |
5 |
| Pages: |
629-40 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2001 |
|
| Title: |
RIKEN Data Curation in Mouse Genome Informatics |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ko MS |
| Year: |
2000 |
| Journal: |
Development |
| Title: |
Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. |
| Volume: |
127 |
| Issue: |
8 |
| Pages: |
1737-49 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Dickinson ME |
| Year: |
2016 |
| Journal: |
Nature |
| Title: |
High-throughput discovery of novel developmental phenotypes. |
| Volume: |
537 |
| Issue: |
7621 |
| Pages: |
508-514 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Koscielny G |
| Year: |
2014 |
| Journal: |
Nucleic Acids Res |
| Title: |
The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. |
| Volume: |
42 |
| Issue: |
Database issue |
| Pages: |
D802-9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
International Knockout Mouse Consortium |
| Year: |
2014 |
| Journal: |
Database Download |
| Title: |
MGI download of modified allele data from IKMC and creation of new knockout alleles |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Lennon G |
| Year: |
1999 |
| Journal: |
Database Download |
| Title: |
WashU-HHMI Mouse EST Project |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Velocigene |
| Year: |
2008 |
| Journal: |
MGI Direct Data Submission |
| Title: |
Alleles produced for the KOMP project by Velocigene (Regeneron Pharmaceuticals) |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC) |
| Year: |
2014 |
| Journal: |
Database Release |
| Title: |
Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database |
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| Publication |
| First Author: |
Helmholtz Zentrum Muenchen GmbH |
| Year: |
2010 |
| Journal: |
MGI Direct Data Submission |
| Title: |
Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu) |
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| Publication |
| First Author: |
UniProt-GOA |
| Year: |
2012 |
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| Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt |
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| Publication |
| First Author: |
DDB, FB, MGI, GOA, ZFIN curators |
| Year: |
2001 |
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| Title: |
Gene Ontology annotation through association of InterPro records with GO terms |
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•
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| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2003 |
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| Title: |
MGI Sequence Curation Reference |
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•
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| Publication |
| First Author: |
Carninci P |
| Year: |
2005 |
| Journal: |
Science |
| Title: |
The transcriptional landscape of the mammalian genome. |
| Volume: |
309 |
| Issue: |
5740 |
| Pages: |
1559-63 |
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•
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•
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| Publication |
| First Author: |
Kawai J |
| Year: |
2001 |
| Journal: |
Nature |
| Title: |
Functional annotation of a full-length mouse cDNA collection. |
| Volume: |
409 |
| Issue: |
6821 |
| Pages: |
685-90 |
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•
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| Publication |
| First Author: |
Adams DJ |
| Year: |
2024 |
| Journal: |
Nature |
| Title: |
Genetic determinants of micronucleus formation in vivo. |
| Volume: |
627 |
| Issue: |
8002 |
| Pages: |
130-136 |
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•
•
•
•
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| Publication |
| First Author: |
UniProt-GOA |
| Year: |
2012 |
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| Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping |
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•
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•
•
•
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| Publication |
| First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
| Year: |
2004 |
| Journal: |
Database Release |
| Title: |
Mouse T31 Radiation Hybrid Data Load |
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•
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| Publication |
| First Author: |
Okazaki Y |
| Year: |
2002 |
| Journal: |
Nature |
| Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
| Volume: |
420 |
| Issue: |
6915 |
| Pages: |
563-73 |
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•
•
•
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| Publication |
| First Author: |
The Gene Ontology Consortium |
| Year: |
2010 |
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| Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
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•
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| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2002 |
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| Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
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•
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•
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| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2010 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
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•
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| Publication |
| First Author: |
MGI Genome Annotation Group and UniGene Staff |
| Year: |
2015 |
| Journal: |
Database Download |
| Title: |
MGI-UniGene Interconnection Effort |
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•
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| Publication |
| First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
| Year: |
2010 |
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| Title: |
Annotation inferences using phylogenetic trees |
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•
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•
•
•
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| Publication |
| First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
| Year: |
2000 |
| Journal: |
Database Release |
| Title: |
Entrez Gene Load |
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•
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•
•
•
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| Publication |
| First Author: |
Allen Institute for Brain Science |
| Year: |
2004 |
| Journal: |
Allen Institute |
| Title: |
Allen Brain Atlas: mouse riboprobes |
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•
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•
•
•
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| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2009 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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•
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| Publication |
| First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
| Year: |
2010 |
| Journal: |
Database Download |
| Title: |
Consensus CDS project |
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•
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| Publication |
| First Author: |
Mouse Genome Informatics Group |
| Year: |
2003 |
| Journal: |
Database Procedure |
| Title: |
Automatic Encodes (AutoE) Reference |
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•
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•
•
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| Publication |
| First Author: |
Bairoch A |
| Year: |
1999 |
| Journal: |
Database Release |
| Title: |
SWISS-PROT Annotated protein sequence database |
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•
•
•
•
•
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| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
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| Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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•
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•
•
•
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| Publication |
| First Author: |
Mouse Genome Informatics |
| Year: |
2010 |
| Journal: |
Database Release |
| Title: |
Protein Ontology Association Load. |
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•
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•
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•
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| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
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| Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
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•
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•
•
•
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| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2009 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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| Publication |
| First Author: |
Wernimont AK |
| Year: |
2004 |
| Journal: |
BMC Struct Biol |
| Title: |
Crystal structure of subunit VPS25 of the endosomal trafficking complex ESCRT-II. |
| Volume: |
4 |
| Issue: |
1 |
| Pages: |
10 |
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| Protein Domain |
| Type: |
Family |
| Description: |
This entry represents the Vps25 subunit (vacuolar protein sorting-associated protein 25) of the endosome-associated complex ESCRT-II (Endosomal Sorting Complexes Required for Transport protein II). ESCRT (ESCRT-I, -II, -III) complexes orchestrate efficient sorting of ubiquitinated transmembrane receptors to lysosomes via multivesicular bodies (MVBs) []. ESCRT-II recruits the transport machinery for protein sorting at MVB []. In addition, the human ESCRT-II has been shown to form a complex with RNA polymerase II elongation factor ELL in order to exert transcriptional control activity. ESCRT-II transiently associates with the endosomal membrane and thereby initiates the formation of ESCRT-III, a membrane-associated protein complex that functions immediately downstream of ESCRT-II during sorting of MVB cargo. ESCRT-II in turn functions downstream of ESCRT-I, a protein complex that binds to ubiquitinated endosomal cargo [].ESCRT-II is a trilobal complex composed of two copies of vps25, one copy of vps22 and the C-terminal region of vps36. The crystal structure of vps25 revealed two winged-helix domains, the N-terminal domain of vps25 interacting with vps22 and vps35 []. |
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
176
 |
| Fragment?: |
false |
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•
•
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| Protein Domain |
| Type: |
Homologous_superfamily |
| Description: |
This superfamily represents the N-terminal winged helix domain of the vps25 subunit (vacuolar protein sorting-associated protein 25) of the endosome-associated complex ESCRT-II (Endosomal Sorting Complexes Required for Transport protein II). ESCRT (ESCRT-I, -II, -III) complexes orchestrate efficient sorting of ubiquitinated transmembrane receptors to lysosomes via multivesicular bodies (MVBs) []. ESCRT-II recruits the transport machinery for protein sorting at MVB []. In addition, the human ESCRT-II has been shown to form a complex with RNA polymerase II elongation factor ELL in order to exert transcriptional control activity. ESCRT-II transiently associates with the endosomal membrane and thereby initiates the formation of ESCRT-III, a membrane-associated protein complex that functions immediately downstream of ESCRT-II during sorting of MVB cargo. ESCRT-II in turn functions downstream of ESCRT-I, a protein complex that binds to ubiquitinated endosomal cargo [].ESCRT-II is a trilobal complex composed of two copies of vps25, one copy of vps22 and the C-terminal region of vps36. The crystal structure of vps25 revealed two winged-helix domains, the N-terminal domain of vps25 interacting with vps22 and vps35 []. |
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| Publication |
| First Author: |
Babst M |
| Year: |
2002 |
| Journal: |
Dev Cell |
| Title: |
Endosome-associated complex, ESCRT-II, recruits transport machinery for protein sorting at the multivesicular body. |
| Volume: |
3 |
| Issue: |
2 |
| Pages: |
283-9 |
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•
•
•
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| Publication |
| First Author: |
Teo H |
| Year: |
2004 |
| Journal: |
Dev Cell |
| Title: |
ESCRT-II, an endosome-associated complex required for protein sorting: crystal structure and interactions with ESCRT-III and membranes. |
| Volume: |
7 |
| Issue: |
4 |
| Pages: |
559-69 |
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•
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
148
 |
| Fragment?: |
false |
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•
•
•
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| Publication |
| First Author: |
Gill DJ |
| Year: |
2007 |
| Journal: |
EMBO J |
| Title: |
Structural insight into the ESCRT-I/-II link and its role in MVB trafficking. |
| Volume: |
26 |
| Issue: |
2 |
| Pages: |
600-12 |
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