Type |
Details |
Score |
Interaction Experiment |
Description: |
A cysteine residue in the helix-loop-helix domain of Id2 is critical for homodimerization and function. |
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Interaction Experiment |
Description: |
In vivo genome-wide binding of Id2 to E2F4 target genes as part of a reversible program in mice liver. |
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Allele |
Name: |
inhibitor of DNA binding 2; endonuclease-mediated mutation 2, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Null/knockout |
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•
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•
•
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Allele |
Name: |
inhibitor of DNA binding 2; endonuclease-mediated mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Inducible, Recombinase |
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•
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Strain |
Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
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Publication |
First Author: |
Liu J |
Year: |
2000 |
Journal: |
Biochem Biophys Res Commun |
Title: |
A cysteine residue in the helix-loop-helix domain of Id2 is critical for homodimerization and function. |
Volume: |
273 |
Issue: |
3 |
Pages: |
1042-7 |
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Strain |
Attribute String: |
coisogenic, mutant strain, endonuclease-mediated mutation |
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Allele |
Name: |
gene trap ROSA 26, Philippe Soriano; endonuclease-mediated mutation 1, RIKEN BioResource Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Conditional ready, Inserted expressed sequence, No functional change, Reporter |
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Publication |
First Author: |
Ferrer-Vicens I |
Year: |
2014 |
Journal: |
Cell Mol Life Sci |
Title: |
In vivo genome-wide binding of Id2 to E2F4 target genes as part of a reversible program in mice liver. |
Volume: |
71 |
Issue: |
18 |
Pages: |
3583-97 |
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HT Experiment |
Series Id: |
E-GEOD-64779 |
Experiment Type: |
RNA-Seq |
Study Type: |
WT vs. Mutant |
Source: |
GEO |
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Allele |
Name: |
inhibitor of DNA binding 2; endonuclease-mediated mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Conditional ready, No functional change |
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HT Experiment |
Series Id: |
GSE59360 |
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
ArrayExpress |
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Allele |
Name: |
inhibitor of DNA binding 2; targeted mutation 1.1, Brigid L Hogan |
Allele Type: |
Targeted |
Attribute String: |
Inducible, Recombinase |
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Allele |
Name: |
inhibitor of DNA binding 2; targeted mutation 2.1, Brigid L Hogan |
Allele Type: |
Targeted |
Attribute String: |
Null/knockout, Reporter |
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Allele |
Name: |
transgene insertion NW236, GENSAT Project at Rockefeller University |
Allele Type: |
Transgenic |
Attribute String: |
Reporter |
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•
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Strain |
Attribute String: |
congenic, mutant strain, targeted mutation |
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•
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Strain |
Attribute String: |
targeted mutation, mutant strain, congenic |
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•
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Strain |
Attribute String: |
mutant stock, transgenic |
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•
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Genotype |
Symbol: |
Id2/Id2<+> |
Background: |
involves: 129S/SvEv * C57BL/6 |
Zygosity: |
ht |
Has Mutant Allele: |
true |
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•
•
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•
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Genotype |
Symbol: |
Id2/Id2<+> |
Background: |
involves: 129S/SvEv * C57BL/6 |
Zygosity: |
ht |
Has Mutant Allele: |
true |
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•
•
•
•
|
Genotype |
Symbol: |
Gt(ROSA)26Sor/Gt(ROSA)26Sor<+> Id2/Id2<+> |
Background: |
involves: 129S/SvEv * 129S6/SvEvTac * C57BL/6NCrl |
Zygosity: |
cn |
Has Mutant Allele: |
true |
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•
•
•
•
•
|
Publication |
First Author: |
Nechanitzky R |
Year: |
2013 |
Journal: |
Nat Immunol |
Title: |
Transcription factor EBF1 is essential for the maintenance of B cell identity and prevention of alternative fates in committed cells. |
Volume: |
14 |
Issue: |
8 |
Pages: |
867-75 |
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•
•
•
•
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Publication |
First Author: |
Yu Y |
Year: |
2015 |
Journal: |
J Exp Med |
Title: |
The transcription factor Bcl11b is specifically expressed in group 2 innate lymphoid cells and is essential for their development. |
Volume: |
212 |
Issue: |
6 |
Pages: |
865-74 |
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•
•
•
•
|
Publication |
First Author: |
Jiao A |
Year: |
2022 |
Journal: |
Sci Adv |
Title: |
DExD/H-box helicase 9 intrinsically controls CD8+ T cell-mediated antiviral response through noncanonical mechanisms. |
Volume: |
8 |
Issue: |
6 |
Pages: |
eabk2691 |
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•
•
•
•
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Publication |
First Author: |
Mowel WK |
Year: |
2017 |
Journal: |
Immunity |
Title: |
Group 1 Innate Lymphoid Cell Lineage Identity Is Determined by a cis-Regulatory Element Marked by a Long Non-coding RNA. |
Volume: |
47 |
Issue: |
3 |
Pages: |
435-449.e8 |
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•
•
•
•
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Publication |
First Author: |
Yamamoto M |
Year: |
2019 |
Journal: |
Commun Biol |
Title: |
TRAF6 maintains mammary stem cells and promotes pregnancy-induced mammary epithelial cell expansion. |
Volume: |
2 |
|
Pages: |
292 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ettersperger J |
Year: |
2016 |
Journal: |
Immunity |
Title: |
Interleukin-15-Dependent T-Cell-like Innate Intraepithelial Lymphocytes Develop in the Intestine and Transform into Lymphomas in Celiac Disease. |
Volume: |
45 |
Issue: |
3 |
Pages: |
610-625 |
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•
•
•
•
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Publication |
First Author: |
Petersen MA |
Year: |
2017 |
Journal: |
Neuron |
Title: |
Fibrinogen Activates BMP Signaling in Oligodendrocyte Progenitor Cells and Inhibits Remyelination after Vascular Damage. |
Volume: |
96 |
Issue: |
5 |
Pages: |
1003-1012.e7 |
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•
•
•
•
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Publication |
First Author: |
Sun XH |
Year: |
1994 |
Journal: |
Cell |
Title: |
Constitutive expression of the Id1 gene impairs mouse B cell development. |
Volume: |
79 |
Issue: |
5 |
Pages: |
893-900 |
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•
•
•
•
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Publication |
First Author: |
Nakatani M |
Year: |
2016 |
Journal: |
Biochem Biophys Res Commun |
Title: |
Scaffold protein enigma homolog 1 overcomes the repression of myogenesis activation by inhibitor of DNA binding 2. |
Volume: |
474 |
Issue: |
2 |
Pages: |
413-420 |
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•
•
•
•
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Publication |
First Author: |
Xu W |
Year: |
2019 |
Journal: |
Immunity |
Title: |
An Id2RFP-Reporter Mouse Redefines Innate Lymphoid Cell Precursor Potentials. |
Volume: |
50 |
Issue: |
4 |
Pages: |
1054-1068.e3 |
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•
•
•
•
•
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Publication |
First Author: |
He Y |
Year: |
2021 |
Journal: |
Cell Metab |
Title: |
Gut microbial metabolites facilitate anticancer therapy efficacy by modulating cytotoxic CD8+ TÂ cell immunity. |
Volume: |
33 |
Issue: |
5 |
Pages: |
988-1000.e7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Vicent D |
Year: |
1998 |
Journal: |
Diabetes |
Title: |
Alterations in skeletal muscle gene expression of ob/ob mice by mRNA differential display. |
Volume: |
47 |
Issue: |
9 |
Pages: |
1451-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Millan AJ |
Year: |
2019 |
Journal: |
J Immunol |
Title: |
Sostdc1 Regulates NK Cell Maturation and Cytotoxicity. |
Volume: |
202 |
Issue: |
8 |
Pages: |
2296-2306 |
|
•
•
•
•
•
|
Publication |
First Author: |
Aupperlee MD |
Year: |
2009 |
Journal: |
Endocrinology |
Title: |
Strain-specific differences in the mechanisms of progesterone regulation of murine mammary gland development. |
Volume: |
150 |
Issue: |
3 |
Pages: |
1485-94 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zook EC |
Year: |
2016 |
Journal: |
J Exp Med |
Title: |
The ETS1 transcription factor is required for the development and cytokine-induced expansion of ILC2. |
Volume: |
213 |
Issue: |
5 |
Pages: |
687-96 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tsai KY |
Year: |
2002 |
Journal: |
Curr Biol |
Title: |
ARF is not required for apoptosis in Rb mutant mouse embryos. |
Volume: |
12 |
Issue: |
2 |
Pages: |
159-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
Constantinides MG |
Year: |
2014 |
Journal: |
Nature |
Title: |
A committed precursor to innate lymphoid cells. |
Volume: |
508 |
Issue: |
7496 |
Pages: |
397-401 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hollnagel A |
Year: |
1999 |
Journal: |
J Biol Chem |
Title: |
Id genes are direct targets of bone morphogenetic protein induction in embryonic stem cells. |
Volume: |
274 |
Issue: |
28 |
Pages: |
19838-45 |
|
•
•
•
•
•
|
Publication |
First Author: |
Araki M |
Year: |
2016 |
Journal: |
Sci Rep |
Title: |
Conditional Deletion of Smad1 Ameliorates Glomerular Injury in Progressive Glomerulonephritis. |
Volume: |
6 |
|
Pages: |
31216 |
|
•
•
•
•
•
|
Publication |
First Author: |
Nair M |
Year: |
2007 |
Journal: |
Nucleic Acids Res |
Title: |
Ovol1 represses its own transcription by competing with transcription activator c-Myb and by recruiting histone deacetylase activity. |
Volume: |
35 |
Issue: |
5 |
Pages: |
1687-97 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lee J |
Year: |
2016 |
Journal: |
Sci Rep |
Title: |
STAT5 is a key transcription factor for IL-3-mediated inhibition of RANKL-induced osteoclastogenesis. |
Volume: |
6 |
|
Pages: |
30977 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ippolito GC |
Year: |
2014 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Dendritic cell fate is determined by BCL11A. |
Volume: |
111 |
Issue: |
11 |
Pages: |
E998-1006 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wikström I |
Year: |
2008 |
Journal: |
Mol Immunol |
Title: |
A role for E2-2 at the DN3 stage of early thymopoiesis. |
Volume: |
45 |
Issue: |
11 |
Pages: |
3302-11 |
|
•
•
•
•
•
|
Publication |
First Author: |
Braunstein M |
Year: |
2011 |
Journal: |
Mol Cell Biol |
Title: |
HEB-deficient T-cell precursors lose T-cell potential and adopt an alternative pathway of differentiation. |
Volume: |
31 |
Issue: |
5 |
Pages: |
971-82 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhang XK |
Year: |
2008 |
Journal: |
J Immunol |
Title: |
The transcription factor Fli-1 modulates marginal zone and follicular B cell development in mice. |
Volume: |
181 |
Issue: |
3 |
Pages: |
1644-54 |
|
•
•
•
•
•
|
Publication |
First Author: |
Edelson BT |
Year: |
2011 |
Journal: |
PLoS One |
Title: |
Batf3-dependent CD11b(low/-) peripheral dendritic cells are GM-CSF-independent and are not required for Th cell priming after subcutaneous immunization. |
Volume: |
6 |
Issue: |
10 |
Pages: |
e25660 |
|
•
•
•
•
•
|
Publication |
First Author: |
Khandelwal P |
Year: |
2013 |
Journal: |
PLoS One |
Title: |
Ocular mucosal CD11b+ and CD103+ mouse dendritic cells under normal conditions and in allergic immune responses. |
Volume: |
8 |
Issue: |
5 |
Pages: |
e64193 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kibschull M |
Year: |
2014 |
Journal: |
Stem Cells Dev |
Title: |
Connexin31.1 (Gjb5) deficiency blocks trophoblast stem cell differentiation and delays placental development. |
Volume: |
23 |
Issue: |
21 |
Pages: |
2649-60 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhang P |
Year: |
2013 |
Journal: |
J Immunol |
Title: |
Notch-regulated periphery B cell differentiation involves suppression of E protein function. |
Volume: |
191 |
Issue: |
2 |
Pages: |
726-36 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhang X |
Year: |
2019 |
Journal: |
Front Immunol |
Title: |
Kctd9 Deficiency Impairs Natural Killer Cell Development and Effector Function. |
Volume: |
10 |
|
Pages: |
744 |
|
•
•
•
•
•
|
Publication |
First Author: |
Alfieri CM |
Year: |
2010 |
Journal: |
Dev Biol |
Title: |
Wnt signaling in heart valve development and osteogenic gene induction. |
Volume: |
338 |
Issue: |
2 |
Pages: |
127-35 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hao J |
Year: |
2014 |
Journal: |
PLoS One |
Title: |
DMH1, a small molecule inhibitor of BMP type i receptors, suppresses growth and invasion of lung cancer. |
Volume: |
9 |
Issue: |
6 |
Pages: |
e90748 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chiaramello A |
Year: |
1995 |
Journal: |
Brain Res Mol Brain Res |
Title: |
Differential expression and distinct DNA-binding specificity of ME1a and ME2 suggest a unique role during differentiation and neuronal plasticity. |
Volume: |
29 |
Issue: |
1 |
Pages: |
107-18 |
|
•
•
•
•
•
|
Publication |
First Author: |
de Candia P |
Year: |
2004 |
Journal: |
Adv Cancer Res |
Title: |
A role for Id proteins in mammary gland physiology and tumorigenesis. |
Volume: |
92 |
|
Pages: |
81-94 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hisaoka T |
Year: |
2006 |
Journal: |
Eur J Neurosci |
Title: |
Characterization of TROY-expressing cells in the developing and postnatal CNS: the possible role in neuronal and glial cell development. |
Volume: |
23 |
Issue: |
12 |
Pages: |
3149-60 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shirakihara T |
Year: |
2007 |
Journal: |
Mol Biol Cell |
Title: |
Differential regulation of epithelial and mesenchymal markers by deltaEF1 proteins in epithelial mesenchymal transition induced by TGF-beta. |
Volume: |
18 |
Issue: |
9 |
Pages: |
3533-44 |
|
•
•
•
•
•
|
Publication |
First Author: |
Matsumoto T |
Year: |
2015 |
Journal: |
Carcinogenesis |
Title: |
Hepatic inflammation facilitates transcription-associated mutagenesis via AID activity and enhances liver tumorigenesis. |
Volume: |
36 |
Issue: |
8 |
Pages: |
904-13 |
|
•
•
•
•
•
|
Publication |
First Author: |
Rahme GJ |
Year: |
2016 |
Journal: |
Cancer Res |
Title: |
PDGF Engages an E2F-USP1 Signaling Pathway to Support ID2-Mediated Survival of Proneural Glioma Cells. |
Volume: |
76 |
Issue: |
10 |
Pages: |
2964-76 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ferreira ACF |
Year: |
2021 |
Journal: |
Nat Immunol |
Title: |
RORα is a critical checkpoint for T cell and ILC2 commitment in the embryonic thymus. |
Volume: |
22 |
Issue: |
2 |
Pages: |
166-178 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chauhan KS |
Year: |
2022 |
Journal: |
Cell Immunol |
Title: |
IRF8 and BATF3 interaction enhances the cDC1 specific Pfkfb3 gene expression. |
Volume: |
371 |
|
Pages: |
104468 |
|
•
•
•
•
•
|
Publication |
First Author: |
He Z |
Year: |
2025 |
Journal: |
BMC Genomics |
Title: |
Transcriptomic dynamics and cell-to-cell communication during the transition of prospermatogonia to spermatogonia revealed at single-cell resolution. |
Volume: |
26 |
Issue: |
1 |
Pages: |
58 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wilson JW |
Year: |
2001 |
Journal: |
Cancer Res |
Title: |
Expression of Id helix-loop-helix proteins in colorectal adenocarcinoma correlates with p53 expression and mitotic index. |
Volume: |
61 |
Issue: |
24 |
Pages: |
8803-10 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hao F |
Year: |
2011 |
Journal: |
J Biol Chem |
Title: |
Protein kinase Cα signaling regulates inhibitor of DNA binding 1 in the intestinal epithelium. |
Volume: |
286 |
Issue: |
20 |
Pages: |
18104-17 |
|
•
•
•
•
•
|
Publication |
First Author: |
Duffield GE |
Year: |
2021 |
Journal: |
Int J Mol Sci |
Title: |
Targeted Disruption of the Inhibitor of DNA Binding 4 (Id4) Gene Alters Photic Entrainment of the Circadian Clock. |
Volume: |
22 |
Issue: |
17 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Townley-Tilson WH |
Year: |
2014 |
Journal: |
PLoS One |
Title: |
The ubiquitin ligase ASB4 promotes trophoblast differentiation through the degradation of ID2. |
Volume: |
9 |
Issue: |
2 |
Pages: |
e89451 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bordon A |
Year: |
2008 |
Journal: |
PLoS One |
Title: |
Enforced expression of the transcriptional coactivator OBF1 impairs B cell differentiation at the earliest stage of development. |
Volume: |
3 |
Issue: |
12 |
Pages: |
e4007 |
|
•
•
•
•
•
|
Publication |
First Author: |
Nguyen TM |
Year: |
2019 |
Journal: |
PLoS One |
Title: |
The proportion of alveolar type 1 cells decreases in murine hypoplastic congenital diaphragmatic hernia lungs. |
Volume: |
14 |
Issue: |
4 |
Pages: |
e0214793 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wissmann R |
Year: |
2003 |
Journal: |
J Biol Chem |
Title: |
Solution structure and function of the "tandem inactivation domain" of the neuronal A-type potassium channel Kv1.4. |
Volume: |
278 |
Issue: |
18 |
Pages: |
16142-50 |
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•
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Protein Domain |
Type: |
Domain |
Description: |
Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group.These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis [].All K+channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+channels; and three types of calcium (Ca)-activated K+channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+channels. In addition, there are K+channel alpha-subunits that possess two P-domains. These are usually highly regulated K+selective leak channels.The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions.The first Kv1 sequence (also known as Shaker) was found in Drosophila melanogaster (Fruit fly). Several vertebrate potassium channels with similar amino acid sequences were subsequently found and, together with the D. melanogaster Shaker channel, now constitute the Kv1 family. The family consists of at least 6 genes (Kv1.1, Kv1.2, Kv1.3, Kv1.4, Kv1.5 and Kv1.6) which each play distinct physiological roles. A conserved motif found towards the C terminus of these channels is required for efficient processing and surface expression []. Variations in this motif account for the differences in cell surface expression and localisation between family members. These channels are mostly expressed in the brain, but can also be found in non-excitable cells, such as lymphocytes []. This entry features the tandem inactivation domain found at the N terminus of the Kv1.4 potassium channel. It is composed of two subdomains. Inactivation domain 1 (ID1, residues 1-38) consists of a flexible N terminus anchored at a 5-turn helix, and is thought to work by occluding the ion pathway, as is the case with a classical ball domain. Inactivation domain 2 (ID2, residues 40-50) is a 2.5 turn helix with a high proportion of hydrophobic residues that probably serves to attach ID1 to the cytoplasmic face of the channel. In this way, it can promote rapid access of ID1 to the receptor site in the open channel. ID1 and ID2 function together to bring about fast inactivation of the Kv1.4 channel, which is important for the role of the channel in short-term plasticity []. |
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Protein Domain |
Type: |
Homologous_superfamily |
Description: |
Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group.These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis [].All K+channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+channels; and three types of calcium (Ca)-activated K+channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+channels. In addition, there are K+channel alpha-subunits that possess two P-domains. These are usually highly regulated K+selective leak channels.The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions.The first Kv1 sequence (also known as Shaker) was found in Drosophila melanogaster (Fruit fly). Several vertebrate potassium channels with similar amino acid sequences were subsequently found and, together with the D. melanogaster Shaker channel, now constitute the Kv1 family. The family consists of at least 6 genes (Kv1.1, Kv1.2, Kv1.3, Kv1.4, Kv1.5 and Kv1.6) which each play distinct physiological roles. A conserved motif found towards the C terminus of these channels is required for efficient processing and surface expression []. Variations in this motif account for the differences in cell surface expression and localisation between family members. These channels are mostly expressed in the brain, but can also be found in non-excitable cells, such as lymphocytes []. This entry features the tandem inactivation domain superfamily found at the N terminus of the Kv1.4 potassium channel. It is composed of two subdomains. Inactivation domain 1 (ID1, residues 1-38) consists of a flexible N terminus anchored at a 5-turn helix, and is thought to work by occluding the ion pathway, as is the case with a classical ball domain. Inactivation domain 2 (ID2, residues 40-50) is a 2.5 turn helix with a high proportion of hydrophobic residues that probably serves to attach ID1 to the cytoplasmic face of the channel. In this way, it can promote rapid access of ID1 to the receptor site in the open channel. ID1 and ID2 function together to bring about fast inactivation of the Kv1.4 channel, which is important for the role of the channel in short-term plasticity []. |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
654
 |
Fragment?: |
false |
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Publication |
First Author: |
Levitan ES |
Year: |
2000 |
Journal: |
Trends Cardiovasc Med |
Title: |
Surface expression of Kv1 voltage-gated K+ channels is governed by a C-terminal motif. |
Volume: |
10 |
Issue: |
7 |
Pages: |
317-20 |
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Publication |
First Author: |
Littleton JT |
Year: |
2000 |
Journal: |
Neuron |
Title: |
Ion channels and synaptic organization: analysis of the Drosophila genome. |
Volume: |
26 |
Issue: |
1 |
Pages: |
35-43 |
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•
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•
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Publication |
First Author: |
Salinas M |
Year: |
1997 |
Journal: |
J Biol Chem |
Title: |
New modulatory alpha subunits for mammalian Shab K+ channels. |
Volume: |
272 |
Issue: |
39 |
Pages: |
24371-9 |
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•
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•
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Publication |
First Author: |
Sansom MS |
Year: |
2000 |
Journal: |
Curr Biol |
Title: |
Potassium channels: watching a voltage-sensor tilt and twist. |
Volume: |
10 |
Issue: |
5 |
Pages: |
R206-9 |
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•
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•
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Publication |
First Author: |
Tempel BL |
Year: |
1988 |
Journal: |
Nature |
Title: |
Cloning of a probable potassium channel gene from mouse brain. |
Volume: |
332 |
Issue: |
6167 |
Pages: |
837-9 |
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•
•
•
•
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Publication |
First Author: |
Perney TM |
Year: |
1991 |
Journal: |
Curr Opin Cell Biol |
Title: |
The molecular biology of K+ channels. |
Volume: |
3 |
Issue: |
4 |
Pages: |
663-70 |
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•
•
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Publication |
First Author: |
Luneau C |
Year: |
1991 |
Journal: |
FEBS Lett |
Title: |
Shaw-like rat brain potassium channel cDNA's with divergent 3' ends. |
Volume: |
288 |
Issue: |
1-2 |
Pages: |
163-7 |
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•
•
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•
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Publication |
First Author: |
Attali B |
Year: |
1992 |
Journal: |
J Biol Chem |
Title: |
Cloning, functional expression, and regulation of two K+ channels in human T lymphocytes. |
Volume: |
267 |
Issue: |
12 |
Pages: |
8650-7 |
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•
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Publication |
First Author: |
Schwarz TL |
Year: |
1988 |
Journal: |
Nature |
Title: |
Multiple potassium-channel components are produced by alternative splicing at the Shaker locus in Drosophila. |
Volume: |
331 |
Issue: |
6152 |
Pages: |
137-42 |
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•
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Publication |
First Author: |
Stühmer W |
Year: |
1989 |
Journal: |
EMBO J |
Title: |
Molecular basis of functional diversity of voltage-gated potassium channels in mammalian brain. |
Volume: |
8 |
Issue: |
11 |
Pages: |
3235-44 |
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•
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Publication |
First Author: |
Miller C |
Year: |
2000 |
Journal: |
Genome Biol |
Title: |
An overview of the potassium channel family. |
Volume: |
1 |
Issue: |
4 |
Pages: |
REVIEWS0004 |
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•
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Publication |
First Author: |
The Gene Expression Nervous System Atlas (GENSAT) Project, The Rockefeller University (New York, NY) |
Year: |
2005 |
Journal: |
Database Download |
Title: |
MGI download of GENSAT transgene data |
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