| Type |
Details |
Score |
| Publication |
| First Author: |
Rüsch A |
| Year: |
1999 |
| Journal: |
Hear Res |
| Title: |
Mechano-electrical transduction in mice lacking the alpha-subunit of the epithelial sodium channel. |
| Volume: |
131 |
| Issue: |
1-2 |
| Pages: |
170-6 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Priat C |
| Year: |
1999 |
| Journal: |
Mamm Genome |
| Title: |
Characterization of 463 type I markers suitable for dog genome mapping. |
| Volume: |
10 |
| Issue: |
8 |
| Pages: |
803-13 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
De Maria R |
| Year: |
2002 |
| Journal: |
Oncogene |
| Title: |
Feline STK gene expression in mammary carcinomas. |
| Volume: |
21 |
| Issue: |
11 |
| Pages: |
1785-90 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
El-Nahas A |
| Year: |
2002 |
| Journal: |
Biochem Genet |
| Title: |
Differential effects of the KitW mutation with other Kit allelic combinations on male sterility among inter- or intrasubspecific hybrids in mice. |
| Volume: |
40 |
| Issue: |
1-2 |
| Pages: |
13-25 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Granziero L |
| Year: |
1999 |
| Journal: |
Eur J Immunol |
| Title: |
Adoptive immunotherapy prevents prostate cancer in a transgenic animal model. |
| Volume: |
29 |
| Issue: |
4 |
| Pages: |
1127-38 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Wang D |
| Year: |
2002 |
| Journal: |
J Biol Chem |
| Title: |
Activation of Ras/Erk pathway by a novel MET-interacting protein RanBPM. |
| Volume: |
277 |
| Issue: |
39 |
| Pages: |
36216-22 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Chen YQ |
| Year: |
2002 |
| Journal: |
Carcinogenesis |
| Title: |
Multiple pulmonary adenomas in the lung of transgenic mice overexpressing the RON receptor tyrosine kinase. Recepteur d'origine nantais. |
| Volume: |
23 |
| Issue: |
11 |
| Pages: |
1811-9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Park YG |
| Year: |
2003 |
| Journal: |
Genome Res |
| Title: |
Multiple cross and inbred strain haplotype mapping of complex-trait candidate genes. |
| Volume: |
13 |
| Issue: |
1 |
| Pages: |
118-21 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ramos M |
| Year: |
2003 |
| Journal: |
Brain Res Dev Brain Res |
| Title: |
Developmental changes in the Ca2+-regulated mitochondrial aspartate-glutamate carrier aralar1 in brain and prominent expression in the spinal cord. |
| Volume: |
143 |
| Issue: |
1 |
| Pages: |
33-46 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Hamachi T |
| Year: |
2003 |
| Journal: |
Arch Oral Biol |
| Title: |
Association between palatal morphogenesis and Pax9 expression pattern in CL/Fr embryos with clefting during palatal development. |
| Volume: |
48 |
| Issue: |
8 |
| Pages: |
581-7 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Stewart TJ |
| Year: |
2004 |
| Journal: |
Immunol Cell Biol |
| Title: |
Tumour susceptibility to innate and adaptive immunotherapy changes during tumour maturation. |
| Volume: |
82 |
| Issue: |
5 |
| Pages: |
455-61 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Chu F |
| Year: |
2005 |
| Journal: |
Cancer Res |
| Title: |
Identification of an inactivating cysteine switch in protein kinase Cepsilon, a rational target for the design of protein kinase Cepsilon-inhibitory cancer therapeutics. |
| Volume: |
65 |
| Issue: |
22 |
| Pages: |
10478-85 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Hales TG |
| Year: |
2006 |
| Journal: |
J Biol Chem |
| Title: |
An asymmetric contribution to gamma-aminobutyric type A receptor function of a conserved lysine within TM2-3 of alpha1, beta2, and gamma2 subunits. |
| Volume: |
281 |
| Issue: |
25 |
| Pages: |
17034-43 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Moshitch-Moshkovitz S |
| Year: |
2006 |
| Journal: |
Neoplasia |
| Title: |
In vivo direct molecular imaging of early tumorigenesis and malignant progression induced by transgenic expression of GFP-Met. |
| Volume: |
8 |
| Issue: |
5 |
| Pages: |
353-63 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Tward AD |
| Year: |
2005 |
| Journal: |
Cold Spring Harb Symp Quant Biol |
| Title: |
Genomic progression in mouse models for liver tumors. |
| Volume: |
70 |
|
| Pages: |
217-24 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Shafer-Weaver K |
| Year: |
2007 |
| Journal: |
Adv Exp Med Biol |
| Title: |
T cell tolerance to tumors and cancer immunotherapy. |
| Volume: |
601 |
|
| Pages: |
357-68 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Wagh PK |
| Year: |
2008 |
| Journal: |
Adv Cancer Res |
| Title: |
Met-related receptor tyrosine kinase Ron in tumor growth and metastasis. |
| Volume: |
100 |
|
| Pages: |
1-33 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Murugaiyan G |
| Year: |
2006 |
| Journal: |
J Immunol |
| Title: |
Functional dichotomy in CD40 reciprocally regulates effector T cell functions. |
| Volume: |
177 |
| Issue: |
10 |
| Pages: |
6642-9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Maarouf AB |
| Year: |
2009 |
| Journal: |
J Biol Chem |
| Title: |
Novel determinants of epithelial sodium channel gating within extracellular thumb domains. |
| Volume: |
284 |
| Issue: |
12 |
| Pages: |
7756-65 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Li J |
| Year: |
2009 |
| Journal: |
Exp Cell Res |
| Title: |
Hepatocyte growth factor (HGF) signals through SHP2 to regulate primary mouse myoblast proliferation. |
| Volume: |
315 |
| Issue: |
13 |
| Pages: |
2284-92 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Shuda K |
| Year: |
2009 |
| Journal: |
Mol Reprod Dev |
| Title: |
Aurora kinase B modulates chromosome alignment in mouse oocytes. |
| Volume: |
76 |
| Issue: |
11 |
| Pages: |
1094-105 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Kanazawa T |
| Year: |
2011 |
| Journal: |
J Vet Med Sci |
| Title: |
Hepatocyte nuclear factor 4 alpha is associated with mesenchymal-epithelial transition in developing kidneys of C57BL/6 mice. |
| Volume: |
73 |
| Issue: |
5 |
| Pages: |
601-7 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Kwast LM |
| Year: |
2011 |
| Journal: |
Toxicol Sci |
| Title: |
Oral exposure to drugs with immune-adjuvant potential induces hypersensitivity responses to the reporter antigen TNP-OVA. |
| Volume: |
121 |
| Issue: |
2 |
| Pages: |
312-9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Zhang L |
| Year: |
2011 |
| Journal: |
Biochim Biophys Acta |
| Title: |
Ganglioside GD1a negatively regulates hepatocyte growth factor expression through caveolin-1 at the transcriptional level in murine osteosarcoma cells. |
| Volume: |
1810 |
| Issue: |
8 |
| Pages: |
759-68 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Xu L |
| Year: |
2012 |
| Journal: |
Cancer Res |
| Title: |
Combined EGFR/MET or EGFR/HSP90 inhibition is effective in the treatment of lung cancers codriven by mutant EGFR containing T790M and MET. |
| Volume: |
72 |
| Issue: |
13 |
| Pages: |
3302-11 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Gao D |
| Year: |
2012 |
| Journal: |
Cancer Res |
| Title: |
Microenvironmental regulation of epithelial-mesenchymal transitions in cancer. |
| Volume: |
72 |
| Issue: |
19 |
| Pages: |
4883-9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Morrison CD |
| Year: |
2013 |
| Journal: |
Cancer Lett |
| Title: |
The relevance of the TGF-β Paradox to EMT-MET programs. |
| Volume: |
341 |
| Issue: |
1 |
| Pages: |
30-40 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Rosafio K |
| Year: |
2014 |
| Journal: |
Glia |
| Title: |
Oxygen tension controls the expression of the monocarboxylate transporter MCT4 in cultured mouse cortical astrocytes via a hypoxia-inducible factor-1α-mediated transcriptional regulation. |
| Volume: |
62 |
| Issue: |
3 |
| Pages: |
477-90 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Chen H |
| Year: |
2014 |
| Journal: |
PLoS One |
| Title: |
A provisional gene regulatory atlas for mouse heart development. |
| Volume: |
9 |
| Issue: |
1 |
| Pages: |
e83364 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Cook MN |
| Year: |
2015 |
| Journal: |
Physiol Genomics |
| Title: |
Identification of candidate genes that underlie the QTL on chromosome 1 that mediates genetic differences in stress-ethanol interactions. |
| Volume: |
47 |
| Issue: |
8 |
| Pages: |
308-17 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Hasnain SZ |
| Year: |
2014 |
| Journal: |
Nat Med |
| Title: |
Glycemic control in diabetes is restored by therapeutic manipulation of cytokines that regulate beta cell stress. |
| Volume: |
20 |
| Issue: |
12 |
| Pages: |
1417-26 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Li R |
| Year: |
2015 |
| Journal: |
PLoS One |
| Title: |
Abl Kinases Regulate HGF/Met Signaling Required for Epithelial Cell Scattering, Tubulogenesis and Motility. |
| Volume: |
10 |
| Issue: |
5 |
| Pages: |
e0124960 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ntostis P |
| Year: |
2017 |
| Journal: |
Reproduction |
| Title: |
Potential sperm contributions to the murine zygote predicted by in silico analysis. |
| Volume: |
154 |
| Issue: |
6 |
| Pages: |
777-788 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Puliga E |
| Year: |
2017 |
| Journal: |
Am J Pathol |
| Title: |
Thyroid Hormone Receptor-β Agonist GC-1 Inhibits Met-β-Catenin-Driven Hepatocellular Cancer. |
| Volume: |
187 |
| Issue: |
11 |
| Pages: |
2473-2485 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Lin J |
| Year: |
2017 |
| Journal: |
Otolaryngol Head Neck Surg |
| Title: |
Panel 3: Genetics and Precision Medicine of Otitis Media. |
| Volume: |
156 |
| Issue: |
4_suppl |
| Pages: |
S41-S50 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Lin L |
| Year: |
2018 |
| Journal: |
J Biol Chem |
| Title: |
The homeobox transcription factor MSX2 partially mediates the effects of bone morphogenetic protein 4 (BMP4) on somatic cell reprogramming. |
| Volume: |
293 |
| Issue: |
38 |
| Pages: |
14905-14915 |
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•
•
•
•
•
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| Publication |
| First Author: |
Fergusson DA |
| Year: |
2019 |
| Journal: |
PLoS One |
| Title: |
Reporting preclinical anesthesia study (REPEAT): Evaluating the quality of reporting in the preclinical anesthesiology literature. |
| Volume: |
14 |
| Issue: |
5 |
| Pages: |
e0215221 |
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•
•
•
•
•
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| Publication |
| First Author: |
Clarke M |
| Year: |
2020 |
| Journal: |
Cancer Discov |
| Title: |
Infant High-Grade Gliomas Comprise Multiple Subgroups Characterized by Novel Targetable Gene Fusions and Favorable Outcomes. |
| Volume: |
10 |
| Issue: |
7 |
| Pages: |
942-963 |
|
•
•
•
•
•
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| Publication |
| First Author: |
Wen D |
| Year: |
2020 |
| Journal: |
Biochim Biophys Acta Mol Basis Dis |
| Title: |
Bromodomain and Extraterminal (BET) protein inhibition suppresses tumor progression and inhibits HGF-MET signaling through targeting cancer-associated fibroblasts in colorectal cancer. |
| Volume: |
1866 |
| Issue: |
12 |
| Pages: |
165923 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ou K |
| Year: |
2018 |
| Journal: |
Mol Metab |
| Title: |
Overexpression of ST5, an activator of Ras, has no effect on β-cell proliferation in adult mice. |
| Volume: |
11 |
|
| Pages: |
212-217 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ablack JN |
| Year: |
2020 |
| Journal: |
J Immunol |
| Title: |
MARCH Proteins Mediate Responses to Antitumor Antibodies. |
| Volume: |
205 |
| Issue: |
10 |
| Pages: |
2883-2892 |
|
•
•
•
•
•
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| Publication |
| First Author: |
Yamaguchi S |
| Year: |
2020 |
| Journal: |
Int J Mol Sci |
| Title: |
A Mechanosensitive Channel, Mouse Transmembrane Channel-Like Protein 1 (Mtmc1) Is Translated from a Splice Variant mTmc1ex1 but Not from the Other Variant mTmc1ex2. |
| Volume: |
21 |
| Issue: |
18 |
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Wang Y |
| Year: |
2020 |
| Journal: |
Cell Death Dis |
| Title: |
TFAP2C facilitates somatic cell reprogramming by inhibiting c-Myc-dependent apoptosis and promoting mesenchymal-to-epithelial transition. |
| Volume: |
11 |
| Issue: |
6 |
| Pages: |
482 |
|
•
•
•
•
•
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| Publication |
| First Author: |
Huang L |
| Year: |
2021 |
| Journal: |
Cancer Res |
| Title: |
Targeting Pan-ETS Factors Inhibits Melanoma Progression. |
| Volume: |
81 |
| Issue: |
8 |
| Pages: |
2071-2085 |
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•
•
•
•
•
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| Publication |
| First Author: |
Hudson J |
| Year: |
2014 |
| Journal: |
Mol Cell Biol |
| Title: |
p66ShcA promotes breast cancer plasticity by inducing an epithelial-to-mesenchymal transition. |
| Volume: |
34 |
| Issue: |
19 |
| Pages: |
3689-701 |
|
•
•
•
•
•
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| Publication |
| First Author: |
Sandrini L |
| Year: |
2022 |
| Journal: |
Biomed Pharmacother |
| Title: |
The α2-adrenergic receptor pathway modulating depression influences the risk of arterial thrombosis associated with BDNFVal66Met polymorphism. |
| Volume: |
146 |
|
| Pages: |
112557 |
|
•
•
•
•
•
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| Publication |
| First Author: |
Yan K |
| Year: |
2022 |
| Journal: |
J Cell Physiol |
| Title: |
BAIAP2L2 is required for the maintenance of mechanotransducing stereocilia of cochlear hair cells. |
| Volume: |
237 |
| Issue: |
1 |
| Pages: |
774-788 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Nagarajan A |
| Year: |
2024 |
| Journal: |
PLoS Genet |
| Title: |
Collaborative Cross mice have diverse phenotypic responses to infection with Methicillin-resistant Staphylococcus aureus USA300. |
| Volume: |
20 |
| Issue: |
5 |
| Pages: |
e1011229 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Damsky WE |
| Year: |
2011 |
| Journal: |
Cancer Cell |
| Title: |
β-catenin signaling controls metastasis in Braf-activated Pten-deficient melanomas. |
| Volume: |
20 |
| Issue: |
6 |
| Pages: |
741-54 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Yamada M |
| Year: |
2019 |
| Journal: |
PLoS Genet |
| Title: |
Functional robustness of adult spermatogonial stem cells after induction of hyperactive Hras. |
| Volume: |
15 |
| Issue: |
5 |
| Pages: |
e1008139 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Weissbach H |
| Year: |
1991 |
| Journal: |
Mol Microbiol |
| Title: |
Regulation of methionine synthesis in Escherichia coli. |
| Volume: |
5 |
| Issue: |
7 |
| Pages: |
1593-7 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Xie Y |
| Year: |
2005 |
| Journal: |
J Biochem |
| Title: |
Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction. |
| Volume: |
137 |
| Issue: |
4 |
| Pages: |
455-61 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Nersissian AM |
| Year: |
1998 |
| Journal: |
Protein Sci |
| Title: |
Uclacyanins, stellacyanins, and plantacyanins are distinct subfamilies of phytocyanins: plant-specific mononuclear blue copper proteins. |
| Volume: |
7 |
| Issue: |
9 |
| Pages: |
1915-29 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Feltzer RE |
| Year: |
2000 |
| Journal: |
J Biol Chem |
| Title: |
Alkaline proteinase inhibitor of Pseudomonas aeruginosa. Interaction of native and N-terminally truncated inhibitor proteins with Pseudomonas metalloproteinases. |
| Volume: |
275 |
| Issue: |
28 |
| Pages: |
21002-9 |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
207
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
78
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
95
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
220
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Stigbrand T |
| Year: |
1971 |
| Journal: |
Biochim Biophys Acta |
| Title: |
Structural properties of umecyanin. A copper protein from horseradish root. |
| Volume: |
236 |
| Issue: |
1 |
| Pages: |
246-52 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Stigbrand T |
| Year: |
1971 |
| Journal: |
FEBS Lett |
| Title: |
On the state of copper in the blue protein umecyanin. |
| Volume: |
12 |
| Issue: |
5 |
| Pages: |
260-262 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Domain |
| Description: |
Among the blue copper proteins with a single type I (or "blue") mononuclearcopper site, the plant-specific phytocyanins constitute a distinct subfamilythat can be further subdivided into the families of uclacyanins, stellacyanins,plantacyanins, and early nodulins. Stellacyanins have a blue coppercoordinated by two His, one Cys and one Gln. In plantacyanins and uclacyanins,the ligands of the type-I Cu sites are two His, one Cys and one Met [, , , ]. Early nodulins lack amino acid residues that coordinate Cu, so they are believed to be involved in unknown processes without binding Cu []. Phytocyanins are found in chloropasts of higher plants.The phytocyanin domain has a core of seven polypeptide strands arranged as aβ-sandwich comprising two β-sheets, β-sheet I and β-sheet II. β-sheet I consists of three β-strands and β-sheet IIconsists of four β-strands. A disulfide bridge close the metal centre ischaracteristic for phytocyanins, in contrast to azurins, pseudoazurins, andplastocyanins, where a disulfide bond is located on the distal side of theβ-barrel. This disuldide bridge may play a crucial role in maintaining thetertiary structure of the protein and/or the formation of the copper bindingcentre because one of the His ligands of copper is followed directly by abridging Cys residue [, , , ]. Some members of this family (P93328) may not bind copper due to the lack of key residues. Some proteins known to contain a phytocyanin domain are listed below:Cucumber basic protein (CBP).Spinach basic protein (SBP).Cucumber stellacyanin (CST).Zucchini mavicyanin.Horseradish umecyanin [, ]. Some of the proteins in this family are allergens. The allergens in this family include allergens with the following designations: Amb a 3. |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK.X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ].Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin.Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. |
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| Protein Domain |
| Type: |
Domain |
| Description: |
Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see [].Aspartate kinase () (AK) catalyzes the first reaction in the aspartate pathway; the phosphorylation of aspartate. The product of this reaction can then be used in the biosynthesis of lysine or in the pathway leading to homoserine, which participates in the biosynthesis of threonine, isoleucine and methionine [].In bacteria there are three different aspartate kinase isozymes which differ in sensitivity to repression and inhibition by Lys, Met and Thr. AK1 and AK2 are bifunctional enzymes which both consist of an N-terminal AK domain and a C-terminal homoserine dehydrogenase domain. AK1 is involved in threonine biosynthesis and AK2, in that of methionine. The third isozyme, AK3 is monofunctional and involved in lysine synthesis. In archaea and plants there may be a single isozyme of AK which in plants is multifunctional. |
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| Protein Domain |
| Type: |
Domain |
| Description: |
This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19.This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK.X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ].Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin.Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. |
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| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
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| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
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| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
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| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
724
 |
| Fragment?: |
false |
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
535
 |
| Fragment?: |
false |
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
1319
 |
| Fragment?: |
false |
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
1068
 |
| Fragment?: |
false |
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| Publication |
| First Author: |
Lindberg R |
| Year: |
1989 |
| Journal: |
J Biol Chem |
| Title: |
The structure and characterization of type I P-450(15) alpha gene as major steroid 15 alpha-hydroxylase and its comparison with type II P-450(15) alpha gene. |
| Volume: |
264 |
| Issue: |
11 |
| Pages: |
6465-71 |
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| Publication |
| First Author: |
Gates FT 3rd |
| Year: |
1981 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Complete amino acid sequence of murine beta 2-microglobulin: structural evidence for strain-related polymorphism. |
| Volume: |
78 |
| Issue: |
1 |
| Pages: |
554-8 |
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•
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| Publication |
| First Author: |
Loewen SK |
| Year: |
1999 |
| Journal: |
J Biol Chem |
| Title: |
Identification of amino acid residues responsible for the pyrimidine and purine nucleoside specificities of human concentrative Na(+) nucleoside cotransporters hCNT1 and hCNT2. |
| Volume: |
274 |
| Issue: |
35 |
| Pages: |
24475-84 |
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•
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| Publication |
| First Author: |
Nishiyama K |
| Year: |
2023 |
| Journal: |
Endocrinology |
| Title: |
Protective Effects of Imeglimin and Metformin Combination Therapy on β-Cells in db/db Male Mice. |
| Volume: |
164 |
| Issue: |
8 |
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•
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| Publication |
| First Author: |
Hance KW |
| Year: |
2005 |
| Journal: |
Mutat Res |
| Title: |
Mouse models expressing human carcinoembryonic antigen (CEA) as a transgene: evaluation of CEA-based cancer vaccines. |
| Volume: |
576 |
| Issue: |
1-2 |
| Pages: |
132-54 |
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•
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| Publication |
| First Author: |
Mahendrasingam S |
| Year: |
2017 |
| Journal: |
PLoS One |
| Title: |
Spatiotemporal changes in the distribution of LHFPL5 in mice cochlear hair bundles during development and in the absence of PCDH15. |
| Volume: |
12 |
| Issue: |
10 |
| Pages: |
e0185285 |
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| Publication |
| First Author: |
Kohno K |
| Year: |
1997 |
| Journal: |
Am J Pathol |
| Title: |
Analysis of amyloid deposition in a transgenic mouse model of homozygous familial amyloidotic polyneuropathy. |
| Volume: |
150 |
| Issue: |
4 |
| Pages: |
1497-508 |
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•
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| Publication |
| First Author: |
Hall MS |
| Year: |
2022 |
| Journal: |
Clin Cancer Res |
| Title: |
Combination Nivolumab, CD137 Agonism, and Adoptive Cell Therapy with Tumor-Infiltrating Lymphocytes for Patients with Metastatic Melanoma. |
| Volume: |
28 |
| Issue: |
24 |
| Pages: |
5317-5329 |
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| Publication |
| First Author: |
Monteiro AC |
| Year: |
2006 |
| Journal: |
J Immunol |
| Title: |
Cooperative activation of TLR2 and bradykinin B2 receptor is required for induction of type 1 immunity in a mouse model of subcutaneous infection by Trypanosoma cruzi. |
| Volume: |
177 |
| Issue: |
9 |
| Pages: |
6325-35 |
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| Publication |
| First Author: |
Yamada H |
| Year: |
2012 |
| Journal: |
Free Radic Biol Med |
| Title: |
Methionine excess in diet induces acute lethal hepatitis in mice lacking cystathionine γ-lyase, an animal model of cystathioninuria. |
| Volume: |
52 |
| Issue: |
9 |
| Pages: |
1716-26 |
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| Publication |
| First Author: |
Takashima K |
| Year: |
2008 |
| Journal: |
J Occup Health |
| Title: |
Different mechanisms of DEHP-induced hepatocellular adenoma tumorigenesis in wild-type and Ppar alpha-null mice. |
| Volume: |
50 |
| Issue: |
2 |
| Pages: |
169-80 |
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| Publication |
| First Author: |
Chi CL |
| Year: |
2003 |
| Journal: |
Development |
| Title: |
The isthmic organizer signal FGF8 is required for cell survival in the prospective midbrain and cerebellum. |
| Volume: |
130 |
| Issue: |
12 |
| Pages: |
2633-44 |
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| Publication |
| First Author: |
Fletcher-Sananikone E |
| Year: |
2021 |
| Journal: |
Cancer Res |
| Title: |
Elimination of Radiation-Induced Senescence in the Brain Tumor Microenvironment Attenuates Glioblastoma Recurrence. |
| Volume: |
81 |
| Issue: |
23 |
| Pages: |
5935-5947 |
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| Publication |
| First Author: |
Chang L |
| Year: |
2018 |
| Journal: |
Nature |
| Title: |
The SWI/SNF complex is a mechanoregulated inhibitor of YAP and TAZ. |
| Volume: |
563 |
| Issue: |
7730 |
| Pages: |
265-269 |
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| Publication |
| First Author: |
Knudsen L |
| Year: |
2013 |
| Journal: |
J Anat |
| Title: |
Surfactant protein D (SP-D) deficiency is attenuated in humanised mice expressing the Met(11)Thr short nucleotide polymorphism of SP-D: implications for surfactant metabolism in the lung. |
| Volume: |
223 |
| Issue: |
6 |
| Pages: |
581-92 |
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| Publication |
| First Author: |
Cassano M |
| Year: |
2008 |
| Journal: |
PLoS One |
| Title: |
Magic-factor 1, a partial agonist of Met, induces muscle hypertrophy by protecting myogenic progenitors from apoptosis. |
| Volume: |
3 |
| Issue: |
9 |
| Pages: |
e3223 |
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| Publication |
| First Author: |
Forlino A |
| Year: |
1999 |
| Journal: |
J Biol Chem |
| Title: |
Use of the Cre/lox recombination system to develop a non-lethal knock-in murine model for osteogenesis imperfecta with an alpha1(I) G349C substitution. Variability in phenotype in BrtlIV mice. |
| Volume: |
274 |
| Issue: |
53 |
| Pages: |
37923-31 |
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| Publication |
| First Author: |
Mediero A |
| Year: |
2015 |
| Journal: |
FASEB J |
| Title: |
Direct or indirect stimulation of adenosine A2A receptors enhances bone regeneration as well as bone morphogenetic protein-2. |
| Volume: |
29 |
| Issue: |
4 |
| Pages: |
1577-90 |
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| Publication |
| First Author: |
Scholten D |
| Year: |
2010 |
| Journal: |
Gastroenterology |
| Title: |
Genetic labeling does not detect epithelial-to-mesenchymal transition of cholangiocytes in liver fibrosis in mice. |
| Volume: |
139 |
| Issue: |
3 |
| Pages: |
987-98 |
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| Publication |
| First Author: |
Newton S |
| Year: |
2022 |
| Journal: |
PLoS Genet |
| Title: |
Neuroplastin genetically interacts with Cadherin 23 and the encoded isoform Np55 is sufficient for cochlear hair cell function and hearing. |
| Volume: |
18 |
| Issue: |
1 |
| Pages: |
e1009937 |
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| Publication |
| First Author: |
Otsuka T |
| Year: |
1998 |
| Journal: |
Cancer Res |
| Title: |
c-Met autocrine activation induces development of malignant melanoma and acquisition of the metastatic phenotype. |
| Volume: |
58 |
| Issue: |
22 |
| Pages: |
5157-67 |
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| Publication |
| First Author: |
von Jonquieres G |
| Year: |
2018 |
| Journal: |
Acta Neuropathol |
| Title: |
Uncoupling N-acetylaspartate from brain pathology: implications for Canavan disease gene therapy. |
| Volume: |
135 |
| Issue: |
1 |
| Pages: |
95-113 |
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•
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| Publication |
| First Author: |
Gerka-Stuyt J |
| Year: |
2013 |
| Journal: |
PLoS One |
| Title: |
Transient receptor potential melastatin 1: a hair cell transduction channel candidate. |
| Volume: |
8 |
| Issue: |
10 |
| Pages: |
e77213 |
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| Publication |
| First Author: |
Dincheva I |
| Year: |
2014 |
| Journal: |
Dev Neurosci |
| Title: |
BDNF modulates contextual fear learning during adolescence. |
| Volume: |
36 |
| Issue: |
3-4 |
| Pages: |
269-76 |
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| Publication |
| First Author: |
Giarratana AO |
| Year: |
2019 |
| Journal: |
Front Neurol |
| Title: |
BDNF Val66Met Genetic Polymorphism Results in Poor Recovery Following Repeated Mild Traumatic Brain Injury in a Mouse Model and Treatment With AAV-BDNF Improves Outcomes. |
| Volume: |
10 |
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| Pages: |
1175 |
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| Publication |
| First Author: |
Gray JD |
| Year: |
2016 |
| Journal: |
Mol Psychiatry |
| Title: |
Translational profiling of stress-induced neuroplasticity in the CA3 pyramidal neurons of BDNF Val66Met mice. |
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| Publication |
| First Author: |
McConnell EJ |
| Year: |
2002 |
| Journal: |
J Surg Res |
| Title: |
Dendritic cell-tumor cell fusion and staphylococcal enterotoxin B treatment in a pancreatic tumor model. |
| Volume: |
107 |
| Issue: |
2 |
| Pages: |
196-202 |
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•
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| Publication |
| First Author: |
Corns LF |
| Year: |
2017 |
| Journal: |
Front Mol Neurosci |
| Title: |
TMC2 Modifies Permeation Properties of the Mechanoelectrical Transducer Channel in Early Postnatal Mouse Cochlear Outer Hair Cells. |
| Volume: |
10 |
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| Pages: |
326 |
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