| Type |
Details |
Score |
| Allele |
| Name: |
complement component factor i; endonuclease-mediated mutation 1, Jiqiu Wen |
| Allele Type: |
Endonuclease-mediated |
| Attribute String: |
Humanized sequence |
|
•
•
•
•
•
|
| Genotype |
| Symbol: |
Igkc/Igkc Igl/Igl |
| Background: |
involves: 129P2/OlaHsd * BALB/c * C57BL/6 * CBA |
| Zygosity: |
cx |
| Has Mutant Allele: |
true |
|
•
•
•
•
•
|
| Genotype |
| Symbol: |
Gt(ROSA)26Sor/Gt(ROSA)26Sor<+> |
| Background: |
involves: 129 |
| Zygosity: |
cn |
| Has Mutant Allele: |
true |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Rooijakkers SH |
| Year: |
2007 |
| Journal: |
J Immunol |
| Title: |
Staphylococcal complement inhibitor: structure and active sites. |
| Volume: |
179 |
| Issue: |
5 |
| Pages: |
2989-98 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Lepore BW |
| Year: |
2005 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
The x-ray crystal structure of lysine-2,3-aminomutase from Clostridium subterminale. |
| Volume: |
102 |
| Issue: |
39 |
| Pages: |
13819-24 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Domain |
| Description: |
This domain is found in the C-terminal of lysine-2,3-aminomutase (LAM) and is involved in dimerisation []. LAM catalyses the interconversion of L-alpha-lysine and L-beta-lysine, which proceeds by migration of the amino group from C2 to C3 concomitant with cross-migration of the 3-pro-R hydrogen of L-alpha-lysine to the 2-pro-R position of L-beta-lysine. |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface []. An 18 residue stretch 31-48 is crucial for SCIN activity []. |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Guldan H |
| Year: |
2011 |
| Journal: |
Angew Chem Int Ed Engl |
| Title: |
Functional assignment of an enzyme that catalyzes the synthesis of an archaea-type ether lipid in bacteria. |
| Volume: |
50 |
| Issue: |
35 |
| Pages: |
8188-91 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Cunningham CA |
| Year: |
2013 |
| Journal: |
Eur J Immunol |
| Title: |
The POSH/JIP-1 scaffold network regulates TCR-mediated JNK1 signals and effector function in CD8(+) T cells. |
| Volume: |
43 |
| Issue: |
12 |
| Pages: |
3361-71 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Nakagawa H |
| Year: |
1993 |
| Journal: |
Biochem Biophys Res Commun |
| Title: |
Complement component C3-derived neutrophil chemotactic factors purified from exudate of rat carrageenin-induced inflammation. |
| Volume: |
194 |
| Issue: |
3 |
| Pages: |
1181-7 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Rehana S |
| Year: |
2007 |
| Journal: |
Toxicon |
| Title: |
Molecular isoforms of cobra venom factor-like proteins in the venom of Austrelaps superbus. |
| Volume: |
50 |
| Issue: |
1 |
| Pages: |
32-52 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
This entry includes complement C3, a major component in the both the classical and alternative complement activation pathways. C3 is cleaved into two chains, known as alpha (C3a) and beta (C3b) by C3 convertases. C3b binds to cell surface carbohydrates or immune aggregates []. C3a is an anaphylatoxin and mediator of a localized inflammatory response, acting as a chemoattractant for neutrophils []. Both alpha and beta chains can be further processed to generate fragments with other properties; for example, C3-beta-c is also a chemoattractant [].This entry also includes complement C3-like proteins from snake venoms, such as AVF-1 and -2 from Austrelaps superbus, which have been shown to activate human complement Factor B in the presence of Factor D and Mg2+, and deplete the complement activity in human and guinea pig serum []. |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Guldan H |
| Year: |
2008 |
| Journal: |
Biochemistry |
| Title: |
Identification and characterization of a bacterial glycerol-1-phosphate dehydrogenase: Ni(2+)-dependent AraM from Bacillus subtilis. |
| Volume: |
47 |
| Issue: |
28 |
| Pages: |
7376-84 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Sundberg E |
| Year: |
1999 |
| Journal: |
Nat Struct Biol |
| Title: |
Structural basis for HLA-DQ binding by the streptococcal superantigen SSA. |
| Volume: |
6 |
| Issue: |
2 |
| Pages: |
123-9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Chi YI |
| Year: |
2002 |
| Journal: |
J Biol Chem |
| Title: |
Zinc-mediated dimerization and its effect on activity and conformation of staphylococcal enterotoxin type C. |
| Volume: |
277 |
| Issue: |
25 |
| Pages: |
22839-46 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Hâkansson M |
| Year: |
2000 |
| Journal: |
J Mol Biol |
| Title: |
The crystal structure of staphylococcal enterotoxin H: implications for binding properties to MHC class II and TcR molecules. |
| Volume: |
302 |
| Issue: |
3 |
| Pages: |
527-37 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Schad EM |
| Year: |
1995 |
| Journal: |
EMBO J |
| Title: |
Crystal structure of the superantigen staphylococcal enterotoxin type A. |
| Volume: |
14 |
| Issue: |
14 |
| Pages: |
3292-301 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Arcus VL |
| Year: |
2000 |
| Journal: |
J Mol Biol |
| Title: |
Conservation and variation in superantigen structure and activity highlighted by the three-dimensional structures of two new superantigens from Streptococcus pyogenes. |
| Volume: |
299 |
| Issue: |
1 |
| Pages: |
157-68 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Earhart CA |
| Year: |
2000 |
| Journal: |
Protein Sci |
| Title: |
Structure of streptococcal pyrogenic exotoxin A reveals a novel metal cluster. |
| Volume: |
9 |
| Issue: |
9 |
| Pages: |
1847-51 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Roussel A |
| Year: |
1997 |
| Journal: |
Nat Struct Biol |
| Title: |
Crystal structure of the streptococcal superantigen SPE-C: dimerization and zinc binding suggest a novel mode of interaction with MHC class II molecules. |
| Volume: |
4 |
| Issue: |
8 |
| Pages: |
635-43 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Baker HM |
| Year: |
2004 |
| Journal: |
J Biol Chem |
| Title: |
Crystallographic and mutational data show that the streptococcal pyrogenic exotoxin J can use a common binding surface for T-cell receptor binding and dimerization. |
| Volume: |
279 |
| Issue: |
37 |
| Pages: |
38571-6 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Papageorgiou AC |
| Year: |
2004 |
| Journal: |
J Biol Chem |
| Title: |
Identification of a secondary zinc-binding site in staphylococcal enterotoxin C2. Implications for superantigen recognition. |
| Volume: |
279 |
| Issue: |
2 |
| Pages: |
1297-303 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Papageorgiou AC |
| Year: |
1996 |
| Journal: |
J Mol Biol |
| Title: |
The refined crystal structure of toxic shock syndrome toxin-1 at 2.07 A resolution. |
| Volume: |
260 |
| Issue: |
4 |
| Pages: |
553-69 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Schwaeble W |
| Year: |
1993 |
| Journal: |
Immunobiology |
| Title: |
Human complement factor B: functional properties of a recombinant zymogen of the alternative activation pathway convertase. |
| Volume: |
188 |
| Issue: |
3 |
| Pages: |
221-32 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Bradley DT |
| Year: |
2011 |
| Journal: |
Eye (Lond) |
| Title: |
Complement in age-related macular degeneration: a focus on function. |
| Volume: |
25 |
| Issue: |
6 |
| Pages: |
683-93 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Homologous_superfamily |
| Description: |
This entry represents superantigen toxins from Staphylococcus aureus and Streptococcus pyogenes, which share a common core structure consisting of beta(2)-α-β(2). S. aureus toxins with this fold include: enterotoxins A (SEA) [], B (SEB) [], C2 (SEC2) [], C3 (SEC3) []and H (SEH) [], heat shock syndrome toxin-1 [], and superantigen-like proteins SET1 []and SET3 []. S. pyogenes toxins with this fold include: pyrogenic exotoxins A1 []and Spe-J [], and in superantigen proteins Spe-C [], Spe-H [], Smez-2 []and SSA []. |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
Caliciviruses are positive-stranded ssRNA viruses that cause gastroenteritis []. The calicivirus genome contains two open reading frames, ORF1 and ORF2 [, ]. ORF1 encodes a non-structural polypeptide, which has RNA helicase, cysteine protease and RNA polymerase activity. The cysteine peptidases of the Calciviruses belong to MEROPS peptidase families C3 (subfamilies A to G), C24, C28, C37 and C40. The regions of the poly-protein in which these activities lie are similar to proteins produced by the picornaviruses [, ]. |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
This group represents a complement factor B. Factor B is part of the alternate pathway of the complement system. It is cleaved by factor D into 2 fragments: Ba and Bb. Bb, a serine protease, then combines with complement factor 3b to generate the C3 or C5 convertase. Bb is involved in the proliferation of preactivated B lymphocytes, while Ba inhibits their proliferation [, ]. |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
This entry represents the lysine-2,3-aminomutase (LAM) family of proteins. LAM catalyses the interconversion of L-alpha-lysine and L-beta-lysine, which proceeds by migration of the amino group from C2 to C3 concomitant with cross-migration of the 3-pro-R hydrogen of L-alpha-lysine to the 2-pro-R position of L-beta-lysine. Glutamate 2,3-aminomutase is closely related to LAM, but can be distinguished by architecture (longer N-terminal region, shorter C-terminal region) and replacement of key lysine-binding residues []. Glutamate 2,3-aminomutase catalyses the interconversion of L-glutamate and L-beta-glutamate []. |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
122
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mathews FS |
| Year: |
1985 |
| Journal: |
Prog Biophys Mol Biol |
| Title: |
The structure, function and evolution of cytochromes. |
| Volume: |
45 |
| Issue: |
1 |
| Pages: |
1-56 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Louro RO |
| Year: |
2001 |
| Journal: |
J Biol Chem |
| Title: |
Conformational component in the coupled transfer of multiple electrons and protons in a monomeric tetraheme cytochrome. |
| Volume: |
276 |
| Issue: |
47 |
| Pages: |
44044-51 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Brigé A |
| Year: |
2002 |
| Journal: |
Biochemistry |
| Title: |
The 1.25 A resolution structure of the diheme NapB subunit of soluble nitrate reductase reveals a novel cytochrome c fold with a stacked heme arrangement. |
| Volume: |
41 |
| Issue: |
15 |
| Pages: |
4827-36 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Homologous_superfamily |
| Description: |
In proteins belonging to the c-type cytochrome family [], the haem group is covalently attached by thioether bonds to two conserved cysteine residues located in the cytochrome c centre. Cytochromes c typically function in electron transfer, but c-type cytochrome centres are also found in the active sites of many enzymes.This domain contains multiple CxxCH motifs. There are a variable number of helices, as well as a little beta structure present in multihaem cytochromes, but they do not form a true structural fold. Cytochrome (cyt) c3-like proteins are multihaem cytochromes, including cyt c3 with four haem groups [], cyt c7 (cyt c551.5) with three haem groups (deletion of one cyt c3 haem-binding site), nine-haem cyt c (tandem repeat of two cyt c3-like domains with an additional haem-binding site), and 16-haem cyt c HmcA (tandem repeat of four cyt c3-like domains). The photosynthetic reaction centre composed of a cytochrome subunit is also a multihaem cytochrome []. In addition, the di-haem elbow motif shows a similar structure, the main characteristic feature of this motif being the packing of its two haems; many members of this group of proteins contain one or more complete motifs flanked by incomplete motifs and/or other domains. For example, the di-haem elbow motif is present in the multihaem cytochrome domain found in the periplasmic nitrate reductase subunit NapB [], in hydroxylamine oxioreductase HAO (contains 3 complete motifs), in cyt c554 (contains one complete motif), in cyt c nitrite reductase, and in the N-terminal domain of flavocytochrome c3 (respiratory fumarate reductase). |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Abmayr S |
| Year: |
2004 |
| Journal: |
Hum Mol Genet |
| Title: |
Characterization of ARC, apoptosis repressor interacting with CARD, in normal and dystrophin-deficient skeletal muscle. |
| Volume: |
13 |
| Issue: |
2 |
| Pages: |
213-21 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Miyamoto Y |
| Year: |
2005 |
| Journal: |
J Neurosci |
| Title: |
Hippocampal synaptic modulation by the phosphotyrosine adapter protein ShcC/N-Shc via interaction with the NMDA receptor. |
| Volume: |
25 |
| Issue: |
7 |
| Pages: |
1826-35 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Sakai R |
| Year: |
2000 |
| Journal: |
Neuron |
| Title: |
The mammalian ShcB and ShcC phosphotyrosine docking proteins function in the maturation of sensory and sympathetic neurons. |
| Volume: |
28 |
| Issue: |
3 |
| Pages: |
819-33 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Campbell DP |
| Year: |
2016 |
| Journal: |
Sci Rep |
| Title: |
Canonical Notch signaling plays an instructive role in auditory supporting cell development. |
| Volume: |
6 |
|
| Pages: |
19484 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Francisco AB |
| Year: |
2010 |
| Journal: |
J Biol Chem |
| Title: |
Deficiency of suppressor enhancer Lin12 1 like (SEL1L) in mice leads to systemic endoplasmic reticulum stress and embryonic lethality. |
| Volume: |
285 |
| Issue: |
18 |
| Pages: |
13694-703 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Kojima T |
| Year: |
2001 |
| Journal: |
Biochem Biophys Res Commun |
| Title: |
Genomic organization of the Shc-related phosphotyrosine adapters and characterization of the full-length Sck/ShcB: specific association of p68-Sck/ShcB with pp135. |
| Volume: |
284 |
| Issue: |
4 |
| Pages: |
1039-47 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Hryciw T |
| Year: |
2010 |
| Journal: |
J Neurochem |
| Title: |
The fibroblast growth factor receptor substrate 3 adapter is a developmentally regulated microtubule-associated protein expressed in migrating and differentiated neurons. |
| Volume: |
112 |
| Issue: |
4 |
| Pages: |
924-39 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Romand R |
| Year: |
2015 |
| Journal: |
PLoS One |
| Title: |
Integrated annotation and analysis of in situ hybridization images using the ImAnno system: application to the ear and sensory organs of the fetal mouse. |
| Volume: |
10 |
| Issue: |
2 |
| Pages: |
e0118024 |
|
•
•
•
•
•
|
| HT Experiment |
| Series Id: |
GSE2172 |
| Experiment Type: |
transcription profiling by array |
| Study Type: |
WT vs. Mutant |
| Source: |
ArrayExpress |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Allende ML |
| Year: |
2004 |
| Journal: |
J Biol Chem |
| Title: |
Mice deficient in sphingosine kinase 1 are rendered lymphopenic by FTY720. |
| Volume: |
279 |
| Issue: |
50 |
| Pages: |
52487-92 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Young MM |
| Year: |
2016 |
| Journal: |
Cell Rep |
| Title: |
Sphingosine Kinase 1 Cooperates with Autophagy to Maintain Endocytic Membrane Trafficking. |
| Volume: |
17 |
| Issue: |
6 |
| Pages: |
1532-1545 |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
mutant strain, congenic, targeted mutation |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
targeted mutation, congenic |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
targeted mutation, mutant strain, congenic |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
targeted mutation, mutant stock |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
congenic, mutant strain, targeted mutation |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
targeted mutation, congenic |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
coisogenic, mutant strain, transgenic |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
coisogenic, mutant strain, transgenic |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
congenic, mutant strain, transgenic |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
congenic, mutant strain, transgenic |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
coisogenic, mutant strain, transgenic |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
mutant strain, transgenic |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Maroulakou IG |
| Year: |
1994 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Prostate and mammary adenocarcinoma in transgenic mice carrying a rat C3(1) simian virus 40 large tumor antigen fusion gene. |
| Volume: |
91 |
| Issue: |
23 |
| Pages: |
11236-40 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Huh JI |
| Year: |
2006 |
| Journal: |
Cancer Res |
| Title: |
Distinct tumor stage-specific inhibitory effects of 2-methoxyestradiol in a breast cancer mouse model associated with Id-1 expression. |
| Volume: |
66 |
| Issue: |
7 |
| Pages: |
3495-503 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Gupta V |
| Year: |
2005 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Mullerian inhibiting substance suppresses tumor growth in the C3(1)T antigen transgenic mouse mammary carcinoma model. |
| Volume: |
102 |
| Issue: |
9 |
| Pages: |
3219-24 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Liu ML |
| Year: |
1998 |
| Journal: |
Oncogene |
| Title: |
Amplification of Ki-ras and elevation of MAP kinase activity during mammary tumor progression in C3(1)/SV40 Tag transgenic mice. |
| Volume: |
17 |
| Issue: |
18 |
| Pages: |
2403-11 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Verschoyle RD |
| Year: |
2004 |
| Journal: |
Toxicol Pathol |
| Title: |
Articular chondromatosis and chrondroid metaplasia in transgenic TAg mice. |
| Volume: |
32 |
| Issue: |
1 |
| Pages: |
22-5 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Liu R |
| Year: |
2005 |
| Journal: |
Cancer Res |
| Title: |
Oncolytic herpes simplex virus vector therapy of breast cancer in C3(1)/SV40 T-antigen transgenic mice. |
| Volume: |
65 |
| Issue: |
4 |
| Pages: |
1532-40 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Wigginton JM |
| Year: |
2001 |
| Journal: |
J Immunol |
| Title: |
Complete regression of established spontaneous mammary carcinoma and the therapeutic prevention of genetically programmed neoplastic transition by IL-12/pulse IL-2: induction of local T cell infiltration, Fas/Fas ligand gene expression, and mammary epithelial apoptosis. |
| Volume: |
166 |
| Issue: |
2 |
| Pages: |
1156-68 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Shibata MA |
| Year: |
1996 |
| Journal: |
Cancer Res |
| Title: |
p53-independent apoptosis during mammary tumor progression in C3(1)/SV40 large T antigen transgenic mice: suppression of apoptosis during the transition from preneoplasia to carcinoma. |
| Volume: |
56 |
| Issue: |
13 |
| Pages: |
2998-3003 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Duncan JS |
| Year: |
2012 |
| Journal: |
Cell |
| Title: |
Dynamic reprogramming of the kinome in response to targeted MEK inhibition in triple-negative breast cancer. |
| Volume: |
149 |
| Issue: |
2 |
| Pages: |
307-21 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Huh JI |
| Year: |
2005 |
| Journal: |
Oncogene |
| Title: |
Inhibition of VEGF receptors significantly impairs mammary cancer growth in C3(1)/Tag transgenic mice through antiangiogenic and non-antiangiogenic mechanisms. |
| Volume: |
24 |
| Issue: |
5 |
| Pages: |
790-800 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Heilmann K |
| Year: |
2017 |
| Journal: |
Oncogene |
| Title: |
Genome-wide screen for differentially methylated long noncoding RNAs identifies Esrp2 and lncRNA Esrp2-as regulated by enhancer DNA methylation with prognostic relevance for human breast cancer. |
| Volume: |
36 |
| Issue: |
46 |
| Pages: |
6446-6461 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
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