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Type Details Score
Publication
16754858 | J:111047
First Author: York IA
Year: 2006
Journal: Proc Natl Acad Sci U S A
Title: Endoplasmic reticulum aminopeptidase 1 (ERAP1) trims MHC class I-presented peptides in vivo and plays an important role in immunodominance.
Volume: 103
Issue: 24
Pages: 9202-7
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Publication
3860873 | J:28385
First Author: Widera G
Year: 1985
Journal: Proc Natl Acad Sci U S A
Title: The I region of the C57BL/10 mouse: characterization and physical linkage to H-2K of an SB beta-like class II pseudogene, psi A beta 3.
Volume: 82
Issue: 16
Pages: 5500-4
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Protein Domain
IPR003995 | RTX_toxin_determinant-A
Type: Family
Description: Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior [, ]. Four principal exotoxin secretion systems have been described. In the type II and IV secretion systems, toxins are first exported to the periplasm by way of a cleaved N-terminal signal sequence; a second set of proteins is used for extracellular transport (type II), or the C terminus of the exotoxin itself is used (type IV). Type III secretion involves at least 20 molecules that assemble into a needle; effector proteins are then translocated through this without need of a signal sequence. In the Type I system, a complete channel is formed through both membranes, and the secretion signal is carried on the C terminus of the exotoxin. The RTX (repeats in toxin) family of cytolytic toxins belong to the Type I secretion system, and are important virulence factors in Gram-negative bacteria, such as Escherichia coli (), Actinobacillus pleuropneumoniae () and Kingella kingae (). They consist of a hydrophobic pore-forming domain at the N-terminal that harbors four putative transmembrane α-helices, a typical glycine-rich repeats segment and a C-terminal signal sequence []. The glycine-rich repeats are essential for binding calcium, and are critical for the biological activity of the secreted toxins []. They can be divided into two different groups, (i) hemolysins, which cause cause the lysis of erythrocytes and exhibit toxicity towards a wide range of cell types from various species; and (ii) leukotoxins, that exhibit narrow cell type and species specificity due to cell-specific binding through the beta2-integrins expressed on the cell surface of leukocytes []. All RTX toxin operons exist in the order rtxCABD, RtxA protein being the structural component of the exotoxin, both RtxB and D being required for its export from the bacterial cell; RtxC is an acyl-carrier-protein-dependent acyl-modification enzyme, required to convert RtxA to its active form [].Escherichia coli haemolysin (HlyA) is often quoted as the model for RTX toxins. Recent work on its relative rtxC gene product HlyC []has revealed that it provides the acylation aspect for post-translational modification of two internal lysine residues in the HlyA protein. To cause pathogenicity, the HlyA toxin must first bind Ca2+ ions to the set of glycine-rich repeats and then be activated by HlyC []. This has been demonstrated both in vitroand in vivo.
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Publication
24252873 | J:207845
 
First Author: Heidersbach A
Year: 2013
Journal: Elife
Title: microRNA-1 regulates sarcomere formation and suppresses smooth muscle gene expression in the mammalian heart.
Volume: 2
Pages: e01323
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Publication
12021782 | J:254163
First Author: Shih TA
Year: 2002
Journal: Nat Immunol
Title: Role of BCR affinity in T cell dependent antibody responses in vivo.
Volume: 3
Issue: 6
Pages: 570-5
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Publication
26755581 | J:228493
First Author: Mugabo Y
Year: 2016
Journal: Proc Natl Acad Sci U S A
Title: Identification of a mammalian glycerol-3-phosphate phosphatase: Role in metabolism and signaling in pancreatic β-cells and hepatocytes.
Volume: 113
Issue: 4
Pages: E430-9
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Publication
20881014 | J:166547
First Author: Airik R
Year: 2010
Journal: Hum Mol Genet
Title: Hydroureternephrosis due to loss of Sox9-regulated smooth muscle cell differentiation of the ureteric mesenchyme.
Volume: 19
Issue: 24
Pages: 4918-29
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Publication
36063105 | J:352895
First Author: Steiner A
Year: 2022
Journal: Hippocampus
Title: Glucagon-like peptide-1 receptor differentially controls mossy cell activity across the dentate gyrus longitudinal axis.
Volume: 32
Issue: 11-12
Pages: 797-807
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Publication
18025190 | J:154814
First Author: Urzainqui A
Year: 2007
Journal: J Immunol
Title: Functional role of P-selectin glycoprotein ligand 1/P-selectin interaction in the generation of tolerogenic dendritic cells.
Volume: 179
Issue: 11
Pages: 7457-65
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Publication
17143330 | J:117354
First Author: Zarbock A
Year: 2006
Journal: J Clin Invest
Title: Complete reversal of acid-induced acute lung injury by blocking of platelet-neutrophil aggregation.
Volume: 116
Issue: 12
Pages: 3211-9
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Publication
30063209 | J:269513
   
First Author: Ballesteros A
Year: 2018
Journal: Elife
Title: Structural relationship between the putative hair cell mechanotransduction channel TMC1 and TMEM16 proteins.
Volume: 7
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Publication
1097575 | J:5557
First Author: Coutinho A
Year: 1975
Journal: J Exp Med
Title: Genetical control of B-cell responses. IV. Inheritance of the unresponsiveness to lipopolysaccharides.
Volume: 142
Issue: 1
Pages: 253-8
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Publication
24478350 | J:310735
First Author: Ertürk A
Year: 2014
Journal: J Neurosci
Title: Local pruning of dendrites and spines by caspase-3-dependent and proteasome-limited mechanisms.
Volume: 34
Issue: 5
Pages: 1672-88
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Publication
16904090 | J:112850
First Author: Dubeykovskiy A
Year: 2006
Journal: Cell Immunol
Title: Runx-dependent regulation of G-protein gamma3 expression in T-cells.
Volume: 240
Issue: 2
Pages: 86-95
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Publication
25995364 | J:223292
First Author: Rei D
Year: 2015
Journal: Proc Natl Acad Sci U S A
Title: Basolateral amygdala bidirectionally modulates stress-induced hippocampal learning and memory deficits through a p25/Cdk5-dependent pathway.
Volume: 112
Issue: 23
Pages: 7291-6
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Protein
W0UTF6
Organism: Mus musculus/domesticus
Length: 142  
Fragment?: false
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Publication
16361063 | J:107028
First Author: Soontornmalai A
Year: 2006
Journal: Neuroscience
Title: Differential, strain-specific cellular and subcellular distribution of multidrug transporters in murine choroid plexus and blood-brain barrier.
Volume: 138
Issue: 1
Pages: 159-69
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Publication
28637665 | J:244956
First Author: Dutta A
Year: 2017
Journal: Blood
Title: Hmga2 promotes the development of myelofibrosis in Jak2V617F knockin mice by enhancing TGF-β1 and Cxcl12 pathways.
Volume: 130
Issue: 7
Pages: 920-932
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Publication
34366798 | J:354775
 
First Author: Bertero A
Year: 2021
Journal: Front Neural Circuits
Title: Corticofugal VIP Gabaergic Projection Neurons in the Mouse Auditory and Motor Cortex.
Volume: 15
Pages: 714780
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Publication
17182538 | J:141949
First Author: Ponomarev ED
Year: 2007
Journal: J Immunol
Title: GM-CSF production by autoreactive T cells is required for the activation of microglial cells and the onset of experimental autoimmune encephalomyelitis.
Volume: 178
Issue: 1
Pages: 39-48
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Publication
26327117 | J:227228
First Author: Shrestha A
Year: 2015
Journal: PLoS One
Title: Generation and Validation of miR-142 Knock Out Mice.
Volume: 10
Issue: 9
Pages: e0136913
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Publication
19351902 | J:148340
First Author: Becker EB
Year: 2009
Journal: Proc Natl Acad Sci U S A
Title: A point mutation in TRPC3 causes abnormal Purkinje cell development and cerebellar ataxia in moonwalker mice.
Volume: 106
Issue: 16
Pages: 6706-11
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Publication
28912510 | J:256378
First Author: Paun A
Year: 2017
Journal: Sci Rep
Title: The Th1/Th17 balance dictates the fibrosis response in murine radiation-induced lung disease.
Volume: 7
Issue: 1
Pages: 11586
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Publication
32813318 | J:305752
First Author: Kumar A
Year: 2020
Journal: FASEB J
Title: Toll-like receptor 2 (TLR2) engages endoplasmic reticulum stress sensor IRE1α to regulate retinal innate responses in Staphylococcus aureus endophthalmitis.
Volume: 34
Issue: 10
Pages: 13826-13838
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Publication
26839406 | J:230430
First Author: Fares MB
Year: 2016
Journal: Proc Natl Acad Sci U S A
Title: Induction of de novo α-synuclein fibrillization in a neuronal model for Parkinson's disease.
Volume: 113
Issue: 7
Pages: E912-21
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Publication
17021013 | J:116064
First Author: Lee S
Year: 2006
Journal: Proc Natl Acad Sci U S A
Title: Coactivator as a target gene specificity determinant for histone H3 lysine 4 methyltransferases.
Volume: 103
Issue: 42
Pages: 15392-7
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Publication
7777519 | J:26237
First Author: Marsters SA
Year: 1995
Journal: Proc Natl Acad Sci U S A
Title: Interferon gamma signals via a high-affinity multisubunit receptor complex that contains two types of polypeptide chain.
Volume: 92
Issue: 12
Pages: 5401-5
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Publication
32203505 | J:286833
First Author: Yoke H
Year: 2020
Journal: PLoS Genet
Title: Rsph4a is essential for the triplet radial spoke head assembly of the mouse motile cilia.
Volume: 16
Issue: 3
Pages: e1008664
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Protein Domain
IPR004602 | UvrA
Type: Family
Description: In Eubacteria and some Archaea, the first steps in nucleotide excision repair are carried out by the coordinated action of the UvrA, UvrB, and UvrC proteins. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB β-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage [].This entry represents the UvrA subunit. UvrA is an ATPase and a DNA-binding protein [].
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Protein Domain
IPR033854 | S49_SppA_1
Type: Domain
Description: This entry contains signal peptide peptidase A (SppA; protease IV; MEROPS identifier S49.001). SppA is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown SppA to be a serine protease. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic centre comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in many serine proteases []. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain, similar to Arabidopsis thaliana SppA1 peptidase. Others, including sohB peptidase, protein C and archaeal signal peptide peptidase, do not contain the amino-terminal domain. Unusually, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain [, , ].
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Protein Domain
IPR013528 | HMG_CoA_synth_N
Type: Domain
Description: Hydroxymethylglutaryl-CoA synthase () catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA [].HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ].This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.
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Publication
10433923 | J:56564
First Author: De Arcangelis A
Year: 1999
Journal: Development
Title: Synergistic activities of alpha3 and alpha6 integrins are required during apical ectodermal ridge formation and organogenesis in the mouse.
Volume: 126
Issue: 17
Pages: 3957-68
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Publication
27325287 | J:246243
First Author: Tol MJ
Year: 2016
Journal: Diabetes
Title: A PPARγ-Bnip3 Axis Couples Adipose Mitochondrial Fusion-Fission Balance to Systemic Insulin Sensitivity.
Volume: 65
Issue: 9
Pages: 2591-605
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Publication
33561425 | J:313383
First Author: Kenswil KJG
Year: 2021
Journal: Cell Stem Cell
Title: Endothelium-derived stromal cells contribute to hematopoietic bone marrow niche formation.
Volume: 28
Issue: 4
Pages: 653-670.e11
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Publication
10507553 | J:59763
First Author: Woolley A
Year: 1999
Journal: Neurosci Lett
Title: Alpha motoneurons are present in normal numbers but with reduced soma size in neurotrophin-3 knockout mice.
Volume: 272
Issue: 2
Pages: 107-10
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Publication
16964282 | J:121066
First Author: Efeyan A
Year: 2007
Journal: Oncogene
Title: Genetic dissection of the role of p21Cip1/Waf1 in p53-mediated tumour suppression.
Volume: 26
Issue: 11
Pages: 1645-9
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Publication
31032403 | J:285533
First Author: Hall A
Year: 2019
Journal: Sci Adv
Title: RUNX represses Pmp22 to drive neurofibromagenesis.
Volume: 5
Issue: 4
Pages: eaau8389
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Publication
29464560 | -
 
First Author: Samanta A
Year: 2018
Journal: Subcell Biochem
Title: Transient Receptor Potential (TRP) Channels.
Volume: 87
Pages: 141-165
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Publication
23040663 | J:203386
First Author: Mishra A
Year: 2013
Journal: Neurobiol Aging
Title: E6-AP association promotes SOD1 aggresomes degradation and suppresses toxicity.
Volume: 34
Issue: 4
Pages: 1310.e11-23
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GO Term
GO:0009567 | double fertilization forming a zygote and endosperm
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Publication
15755515 | J:104931
First Author: El Idrissi A
Year: 2005
Journal: Neurosci Lett
Title: Decreased GABA(A) receptor expression in the seizure-prone fragile X mouse.
Volume: 377
Issue: 3
Pages: 141-6
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Publication
23646120 | J:221024
First Author: Li A
Year: 2013
Journal: PLoS One
Title: Tissue-dependent consequences of Apc inactivation on proliferation and differentiation of ciliated cell progenitors via Wnt and notch signaling.
Volume: 8
Issue: 4
Pages: e62215
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Publication
22928868 | J:207647
First Author: Pulga A
Year: 2012
Journal: Eur J Neurosci
Title: Anxiolytic- and panicolytic-like effects of Neuropeptide S in the mouse elevated T-maze.
Volume: 36
Issue: 11
Pages: 3531-7
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Publication
26978163 | J:302080
First Author: Davenport A
Year: 2016
Journal: Neurodegener Dis
Title: Loss of Maspardin Attenuates the Growth and Maturation of Mouse Cortical Neurons.
Volume: 16
Issue: 3-4
Pages: 260-72
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Publication
31067458 | J:294476
First Author: Hamon A
Year: 2019
Journal: Cell Rep
Title: Linking YAP to Müller Glia Quiescence Exit in the Degenerative Retina.
Volume: 27
Issue: 6
Pages: 1712-1725.e6
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Publication
28722653 | J:256677
   
First Author: Hepler C
Year: 2017
Journal: Elife
Title: Directing visceral white adipocyte precursors to a thermogenic adipocyte fate improves insulin sensitivity in obese mice.
Volume: 6
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Publication
20237272 | J:159106
First Author: Faedo A
Year: 2010
Journal: J Neurosci
Title: Repression of Fgf signaling by sprouty1-2 regulates cortical patterning in two distinct regions and times.
Volume: 30
Issue: 11
Pages: 4015-23
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Publication
34529751 | J:313615
 
First Author: Hausmann A
Year: 2021
Journal: J Exp Med
Title: Intercrypt sentinel macrophages tune antibacterial NF-κB responses in gut epithelial cells via TNF.
Volume: 218
Issue: 11
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Publication
10464288 | J:57247
First Author: Hurskainen TL
Year: 1999
Journal: J Biol Chem
Title: ADAM-TS5, ADAM-TS6, and ADAM-TS7, novel members of a new family of zinc metalloproteases. General features and genomic distribution of the ADAM-TS family.
Volume: 274
Issue: 36
Pages: 25555-63
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Publication
28874450 | J:247541
First Author: Fujita A
Year: 2017
Journal: J Neurosci
Title: Hypothalamic Tuberomammillary Nucleus Neurons: Electrophysiological Diversity and Essential Role in Arousal Stability.
Volume: 37
Issue: 39
Pages: 9574-9592
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Publication
30674531 | J:274209
First Author: Vuong L
Year: 2019
Journal: Cancer Res
Title: An Orally Active Galectin-3 Antagonist Inhibits Lung Adenocarcinoma Growth and Augments Response to PD-L1 Blockade.
Volume: 79
Issue: 7
Pages: 1480-1492
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Publication
8146185 | J:30468
First Author: Weskamp G
Year: 1994
Journal: Proc Natl Acad Sci U S A
Title: A family of cellular proteins related to snake venom disintegrins.
Volume: 91
Issue: 7
Pages: 2748-51
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Publication
30626971 | J:270604
First Author: Poulopoulos A
Year: 2019
Journal: Nature
Title: Subcellular transcriptomes and proteomes of developing axon projections in the cerebral cortex.
Volume: 565
Issue: 7739
Pages: 356-360
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Publication
17353370 | J:125405
First Author: Liston A
Year: 2007
Journal: J Exp Med
Title: Lack of Foxp3 function and expression in the thymic epithelium.
Volume: 204
Issue: 3
Pages: 475-80
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Publication
18445125 | J:157600
First Author: Wolfe A
Year: 2008
Journal: J Neuroendocrinol
Title: Temporal and spatial regulation of CRE recombinase expression in gonadotrophin-releasing hormone neurones in the mouse.
Volume: 20
Issue: 7
Pages: 909-16
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Publication
25794678 | J:222437
First Author: Aoto K
Year: 2015
Journal: Dev Biol
Title: Mef2c-F10N enhancer driven β-galactosidase (LacZ) and Cre recombinase mice facilitate analyses of gene function and lineage fate in neural crest cells.
Volume: 402
Issue: 1
Pages: 3-16
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Publication
30332638 | J:270756
First Author: Chowdhury A
Year: 2018
Journal: Cell Rep
Title: Defective Mitochondrial Cardiolipin Remodeling Dampens HIF-1α Expression in Hypoxia.
Volume: 25
Issue: 3
Pages: 561-570.e6
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Publication
12193224 | J:268929
First Author: Mukasa A
Year: 2002
Journal: Scand J Immunol
Title: Extensive and preferential Fas/Fas ligand-dependent death of gammadelta T cells following infection with Listeria monocytogenes.
Volume: 56
Issue: 3
Pages: 233-47
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Publication
35413056 | J:324022
First Author: Autio A
Year: 2022
Journal: PLoS One
Title: SIRPα - CD47 axis regulates dendritic cell-T cell interactions and TCR activation during T cell priming in spleen.
Volume: 17
Issue: 4
Pages: e0266566
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Publication
22753646 | J:189182
First Author: Slusarz A
Year: 2012
Journal: Endocrinology
Title: Aggressive prostate cancer is prevented in ERαKO mice and stimulated in ERβKO TRAMP mice.
Volume: 153
Issue: 9
Pages: 4160-70
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Publication
33074106 | J:298900
   
First Author: Franco A
Year: 2020
Journal: Elife
Title: Burst mitofusin activation reverses neuromuscular dysfunction in murine CMT2A.
Volume: 9
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Publication
26991935 | J:240143
First Author: Tonouchi A
Year: 2016
Journal: J Neurochem
Title: Loss of collapsin response mediator protein 4 suppresses dopaminergic neuron death in an 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine-induced mouse model of Parkinson's disease.
Volume: 137
Issue: 5
Pages: 795-805
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Publication
20798332 | J:169731
First Author: Kim HK
Year: 2010
Journal: Diabetes
Title: Hypothalamic Angptl4/Fiaf is a novel regulator of food intake and body weight.
Volume: 59
Issue: 11
Pages: 2772-80
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Publication
34610308 | J:326966
First Author: Angelini A
Year: 2021
Journal: Cell Rep
Title: PHDs/CPT1B/VDAC1 axis regulates long-chain fatty acid oxidation in cardiomyocytes.
Volume: 37
Issue: 1
Pages: 109767
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Publication
21738788 | J:174762
First Author: Hörnblad A
Year: 2011
Journal: PLoS One
Title: Impaired spleen formation perturbs morphogenesis of the gastric lobe of the pancreas.
Volume: 6
Issue: 6
Pages: e21753
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Publication
19835843 | J:155612
First Author: Shmueli A
Year: 2009
Journal: Biochem Biophys Res Commun
Title: Targeting of gp78 for ubiquitin-mediated proteasomal degradation by Hrd1: cross-talk between E3s in the endoplasmic reticulum.
Volume: 390
Issue: 3
Pages: 758-62
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Publication
25640176 | J:222890
First Author: Inoue A
Year: 2015
Journal: Cell Rep
Title: Haploinsufficiency, but not defective paternal 5mC oxidation, accounts for the developmental defects of maternal Tet3 knockouts.
Volume: 10
Issue: 4
Pages: 463-70
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Publication
39147779 | J:359005
First Author: Zainu A
Year: 2024
Journal: Nat Commun
Title: FIGNL1-FIRRM is essential for meiotic recombination and prevents DNA damage-independent RAD51 and DMC1 loading.
Volume: 15
Issue: 1
Pages: 7015
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Publication
21214893 | J:168258
 
First Author: Dwyer ND
Year: 2011
Journal: Neural Dev
Title: A forward genetic screen with a thalamocortical axon reporter mouse yields novel neurodevelopment mutants and a distinct emx2 mutant phenotype.
Volume: 6
Pages: 3
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Publication
7760211 | J:24071
First Author: Bakalian A
Year: 1995
Journal: J Neurogenet
Title: Quantitative analysis of the Purkinje cell and the granule cell populations in the cerebellum of nude mice.
Volume: 9
Issue: 4
Pages: 207-18
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Publication
28223284 | J:247091
First Author: Matsuoka TA
Year: 2017
Journal: Diabetes
Title: Mafa Enables Pdx1 to Effectively Convert Pancreatic Islet Progenitors and Committed Islet α-Cells Into β-Cells In Vivo.
Volume: 66
Issue: 5
Pages: 1293-1300
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Publication
24605938 | J:326984
First Author: Ontiveros EP
Year: 2014
Journal: Leuk Lymphoma
Title: A new model of LMP1-MYC interaction in B cell lymphoma.
Volume: 55
Issue: 12
Pages: 2917-23
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Publication
15340074 | J:92970
First Author: Friedrich EB
Year: 2004
Journal: Mol Cell Biol
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