| Type |
Details |
Score |
| Publication |
| First Author: |
Meechan DW |
| Year: |
2006 |
| Journal: |
Mol Cell Neurosci |
| Title: |
Gene dosage in the developing and adult brain in a mouse model of 22q11 deletion syndrome. |
| Volume: |
33 |
| Issue: |
4 |
| Pages: |
412-28 |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Sobuz SU |
| Year: |
2019 |
| Journal: |
Biochim Biophys Acta Mol Cell Res |
| Title: |
SIRT7 regulates the nuclear export of NF-κB p65 by deacetylating Ran. |
| Volume: |
1866 |
| Issue: |
9 |
| Pages: |
1355-1367 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Nacerddine K |
| Year: |
2005 |
| Journal: |
Dev Cell |
| Title: |
The SUMO pathway is essential for nuclear integrity and chromosome segregation in mice. |
| Volume: |
9 |
| Issue: |
6 |
| Pages: |
769-79 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
MartÃnez-Solano L |
| Year: |
2009 |
| Journal: |
Proteomics |
| Title: |
Proteomics of RAW 264.7 macrophages upon interaction with heat-inactivated Candida albicans cells unravel an anti-inflammatory response. |
| Volume: |
9 |
| Issue: |
11 |
| Pages: |
2995-3010 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Carter GT |
| Year: |
1995 |
| Journal: |
Neuromuscul Disord |
| Title: |
Effect of voluntary wheel-running exercise on muscles of the mdx mouse. |
| Volume: |
5 |
| Issue: |
4 |
| Pages: |
323-32 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Shirasawa T |
| Year: |
2003 |
| Journal: |
J Biol Chem |
| Title: |
Oxygen affinity of hemoglobin regulates O2 consumption, metabolism, and physical activity. |
| Volume: |
278 |
| Issue: |
7 |
| Pages: |
5035-43 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Hong DH |
| Year: |
2000 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
A retinitis pigmentosa GTPase regulator (RPGR)-deficient mouse model for X-linked retinitis pigmentosa (RP3). |
| Volume: |
97 |
| Issue: |
7 |
| Pages: |
3649-54 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Bannerman DM |
| Year: |
2012 |
| Journal: |
Nat Neurosci |
| Title: |
Dissecting spatial knowledge from spatial choice by hippocampal NMDA receptor deletion. |
| Volume: |
15 |
| Issue: |
8 |
| Pages: |
1153-9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Srikanta SB |
| Year: |
2021 |
| Journal: |
PLoS One |
| Title: |
Behavioral phenotyping of mice lacking the deubiquitinase USP2. |
| Volume: |
16 |
| Issue: |
2 |
| Pages: |
e0241403 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Codd LN |
| Year: |
2020 |
| Journal: |
Sci Rep |
| Title: |
Exercise reverses learning deficits induced by hippocampal injury by promoting neurogenesis. |
| Volume: |
10 |
| Issue: |
1 |
| Pages: |
19269 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Zu T |
| Year: |
2011 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Non-ATG-initiated translation directed by microsatellite expansions. |
| Volume: |
108 |
| Issue: |
1 |
| Pages: |
260-5 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
O'Rourke JG |
| Year: |
2015 |
| Journal: |
Neuron |
| Title: |
C9orf72 BAC Transgenic Mice Display Typical Pathologic Features of ALS/FTD. |
| Volume: |
88 |
| Issue: |
5 |
| Pages: |
892-901 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Gil A |
| Year: |
2006 |
| Journal: |
Mol Biol Cell |
| Title: |
Nuclear localization of PTEN by a Ran-dependent mechanism enhances apoptosis: Involvement of an N-terminal nuclear localization domain and multiple nuclear exclusion motifs. |
| Volume: |
17 |
| Issue: |
9 |
| Pages: |
4002-13 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Liu Y |
| Year: |
2016 |
| Journal: |
Neuron |
| Title: |
C9orf72 BAC Mouse Model with Motor Deficits and Neurodegenerative Features of ALS/FTD. |
| Volume: |
90 |
| Issue: |
3 |
| Pages: |
521-34 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Pattamatta A |
| Year: |
2021 |
| Journal: |
Hum Mol Genet |
| Title: |
Repeat length increases disease penetrance and severity in C9orf72 ALS/FTD BAC transgenic mice. |
| Volume: |
29 |
| Issue: |
24 |
| Pages: |
3900-3918 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Forwood JK |
| Year: |
2008 |
| Journal: |
J Mol Biol |
| Title: |
Kap95p binding induces the switch loops of RanGDP to adopt the GTP-bound conformation: implications for nuclear import complex assembly dynamics. |
| Volume: |
383 |
| Issue: |
4 |
| Pages: |
772-82 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Yasuda Y |
| Year: |
2012 |
| Journal: |
EMBO J |
| Title: |
Nuclear retention of importin α coordinates cell fate through changes in gene expression. |
| Volume: |
31 |
| Issue: |
1 |
| Pages: |
83-94 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Möhle L |
| Year: |
2016 |
| Journal: |
Cell Rep |
| Title: |
Ly6C(hi) Monocytes Provide a Link between Antibiotic-Induced Changes in Gut Microbiota and Adult Hippocampal Neurogenesis. |
| Volume: |
15 |
| Issue: |
9 |
| Pages: |
1945-56 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Yang S |
| Year: |
2020 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Lack of RAN-mediated toxicity in Huntington's disease knock-in mice. |
| Volume: |
117 |
| Issue: |
8 |
| Pages: |
4411-4417 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Zhong J |
| Year: |
2023 |
| Journal: |
Nat Commun |
| Title: |
Hyodeoxycholic acid ameliorates nonalcoholic fatty liver disease by inhibiting RAN-mediated PPARα nucleus-cytoplasm shuttling. |
| Volume: |
14 |
| Issue: |
1 |
| Pages: |
5451 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Kim K |
| Year: |
2024 |
| Journal: |
Mol Metab |
| Title: |
Uncoupling protein 1-driven Cre (Ucp1-Cre) is expressed in the epithelial cells of mammary glands and various non-adipose tissues. |
| Volume: |
84 |
|
| Pages: |
101948 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Schwalbe DC |
| Year: |
2024 |
| Journal: |
J Neurosci |
| Title: |
Molecular Organization of Autonomic, Respiratory, and Spinally-Projecting Neurons in the Mouse Ventrolateral Medulla. |
| Volume: |
44 |
| Issue: |
31 |
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Chucair-Elliott AJ |
| Year: |
2020 |
| Journal: |
Commun Biol |
| Title: |
Inducible cell-specific mouse models for paired epigenetic and transcriptomic studies of microglia and astroglia. |
| Volume: |
3 |
| Issue: |
1 |
| Pages: |
693 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Costa Y |
| Year: |
2006 |
| Journal: |
Hum Mol Genet |
| Title: |
Mouse MAELSTROM: the link between meiotic silencing of unsynapsed chromatin and microRNA pathway? |
| Volume: |
15 |
| Issue: |
15 |
| Pages: |
2324-34 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Suntharalingam M |
| Year: |
2003 |
| Journal: |
Dev Cell |
| Title: |
Peering through the pore: nuclear pore complex structure, assembly, and function. |
| Volume: |
4 |
| Issue: |
6 |
| Pages: |
775-89 |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
330
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
185
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
377
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
530
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
38
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
330
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
502
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
320
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
255
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
254
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
40
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
293
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Yaseen NR |
| Year: |
1999 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Two distinct classes of Ran-binding sites on the nucleoporin Nup-358. |
| Volume: |
96 |
| Issue: |
10 |
| Pages: |
5516-21 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Aksu M |
| Year: |
2018 |
| Journal: |
J Cell Biol |
| Title: |
Xpo7 is a broad-spectrum exportin and a nuclear import receptor. |
|
|
|
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus.Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Stewart M |
| Year: |
2000 |
| Journal: |
Cell Struct Funct |
| Title: |
Insights into the molecular mechanism of nuclear trafficking using nuclear transport factor 2 (NTF2). |
| Volume: |
25 |
| Issue: |
4 |
| Pages: |
217-25 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Domain |
| Description: |
Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry representsthe zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Domain |
| Description: |
Ran () is an evolutionary conserved member of the Ras superfamily of small GTPases that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Import receptors bind their cargos in the cytoplasm where the concentration of RanGTP is low and release their cargos in the nucleus where the concentration of RanGTP is high []. Export receptors respond to Ran GTP in the oppositemanner. Nuclear transport factor 2 (NTF2) is a homodimer of approximately 14kDa subunits which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 binds to RanGDP sufficiently strongly for the complex to remain intact during transport through NPCs, but the interaction between NTF2 and FxFG nucleoporins is much more transient, which would enable NTF2 to move through the NPC by hopping from one repeat to another [, ].NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity.This entry contains predominantly eukaryotic proteins. The following proteins contain a region similar to NTF2:Eukaryotic NXF proteins []. These are nuclear mRNA export factors. These proteins contain, in addition to a NTF2 domain, a number of leucine-rich repeats and a UBA domain.Eukaryotic NXT1/NXT2 proteins []. These proteins are stimulators of protein export for NES-containing proteins. The also play a role in mRNA nuclear export. They heterodimerize with NFX proteins. In contrast to NTF2, NXT1 and NXT2 preferentially bind RanGTP.Eukaryotic Ras-GTPase-activating protein (GAP)-binding proteins (G3BP's). These proteins contain one NTF2 domain and one RRM (see ). |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Homologous_superfamily |
| Description: |
Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain superfamily found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. |
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•
•
•
•
|
| Publication |
| First Author: |
Matsui T |
| Year: |
2006 |
| Journal: |
J Biol Chem |
| Title: |
Mouse homologue of skin-specific retroviral-like aspartic protease involved in wrinkle formation. |
| Volume: |
281 |
| Issue: |
37 |
| Pages: |
27512-25 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Tooley CE |
| Year: |
2010 |
| Journal: |
Nature |
| Title: |
NRMT is an alpha-N-methyltransferase that methylates RCC1 and retinoblastoma protein. |
| Volume: |
466 |
| Issue: |
7310 |
| Pages: |
1125-8 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ribbeck K |
| Year: |
2007 |
| Journal: |
Curr Biol |
| Title: |
A role for NuSAP in linking microtubules to mitotic chromosomes. |
| Volume: |
17 |
| Issue: |
3 |
| Pages: |
230-6 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Jones LR |
| Year: |
1995 |
| Journal: |
J Biol Chem |
| Title: |
Purification, primary structure, and immunological characterization of the 26-kDa calsequestrin binding protein (junctin) from cardiac junctional sarcoplasmic reticulum. |
| Volume: |
270 |
| Issue: |
51 |
| Pages: |
30787-96 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Aoki N |
| Year: |
2001 |
| Journal: |
J Invest Dermatol |
| Title: |
A novel type II cytokeratin, mK6irs, is expressed in the Huxley and Henle layers of the mouse inner root sheath. |
| Volume: |
116 |
| Issue: |
3 |
| Pages: |
359-65 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Nakamura T |
| Year: |
2007 |
| Journal: |
Nat Cell Biol |
| Title: |
PGC7/Stella protects against DNA demethylation in early embryogenesis. |
| Volume: |
9 |
| Issue: |
1 |
| Pages: |
64-71 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Black BE |
| Year: |
1999 |
| Journal: |
Mol Cell Biol |
| Title: |
Identification of an NTF2-related factor that binds Ran-GTP and regulates nuclear protein export. |
| Volume: |
19 |
| Issue: |
12 |
| Pages: |
8616-24 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Nagoshi E |
| Year: |
1999 |
| Journal: |
Mol Biol Cell |
| Title: |
Nuclear import of sterol regulatory element-binding protein-2, a basic helix-loop-helix-leucine zipper (bHLH-Zip)-containing transcription factor, occurs through the direct interaction of importin beta with HLH-Zip. |
| Volume: |
10 |
| Issue: |
7 |
| Pages: |
2221-33 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Monecke T |
| Year: |
2013 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Structural basis for cooperativity of CRM1 export complex formation. |
| Volume: |
110 |
| Issue: |
3 |
| Pages: |
960-5 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Baltgalvis KA |
| Year: |
2008 |
| Journal: |
J Appl Physiol (1985) |
| Title: |
Effect of exercise on biological pathways in ApcMin/+ mouse intestinal polyps. |
| Volume: |
104 |
| Issue: |
4 |
| Pages: |
1137-43 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Kuraitis D |
| Year: |
2013 |
| Journal: |
Dis Model Mech |
| Title: |
A necrotic stimulus is required to maximize matrix-mediated myogenesis in mice. |
| Volume: |
6 |
| Issue: |
3 |
| Pages: |
793-801 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Inoue T |
| Year: |
2007 |
| Journal: |
Dev Biol |
| Title: |
Zic2 and Zic3 synergistically control neurulation and segmentation of paraxial mesoderm in mouse embryo. |
| Volume: |
306 |
| Issue: |
2 |
| Pages: |
669-84 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Hong YH |
| Year: |
2016 |
| Journal: |
Am J Physiol Endocrinol Metab |
| Title: |
Skeletal muscle glucose uptake during treadmill exercise in neuronal nitric oxide synthase-μ knockout mice. |
| Volume: |
310 |
| Issue: |
10 |
| Pages: |
E838-45 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Nijholt KT |
| Year: |
2021 |
| Journal: |
Pflugers Arch |
| Title: |
The erythropoietin receptor expressed in skeletal muscle is essential for mitochondrial biogenesis and physiological exercise. |
| Volume: |
473 |
| Issue: |
8 |
| Pages: |
1301-1313 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Quinn LS |
| Year: |
2014 |
| Journal: |
Endocrinology |
| Title: |
IL-15 is required for postexercise induction of the pro-oxidative mediators PPARδ and SIRT1 in male mice. |
| Volume: |
155 |
| Issue: |
1 |
| Pages: |
143-55 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Pistilli EE |
| Year: |
2011 |
| Journal: |
J Clin Invest |
| Title: |
Loss of IL-15 receptor α alters the endurance, fatigability, and metabolic characteristics of mouse fast skeletal muscles. |
| Volume: |
121 |
| Issue: |
8 |
| Pages: |
3120-32 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Tran PHT |
| Year: |
2019 |
| Journal: |
Physiol Rep |
| Title: |
The influence of fibrillin-1 and physical activity upon tendon tissue morphology and mechanical properties in mice. |
| Volume: |
7 |
| Issue: |
21 |
| Pages: |
e14267 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Li W |
| Year: |
2016 |
| Journal: |
Am J Physiol Heart Circ Physiol |
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