Type |
Details |
Score |
GXD Expression |
Probe: |
MGI:3653200 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-08-30 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757723 |
Pattern: |
Regionally restricted |
Stage: |
TS23 |
Assay Id: |
MGI:3653202 |
Age: |
embryonic day 15.5 |
Image: |
1I |
Note: |
Expression is present in the proximal region of the spinal cord. |
Specimen Label: |
1I |
Detected: |
true |
Specimen Num: |
10 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2021-04-16 |
Strength: |
Present |
Sex: |
Female |
Emaps: |
EMAPS:1757728 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6691294 |
Age: |
postnatal adult |
Image: |
UC Davis_1872304 |
|
Specimen Label: |
UC Davis_1872304 |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2021-04-16 |
Strength: |
Present |
Sex: |
Female |
Emaps: |
EMAPS:1757728 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6691294 |
Age: |
postnatal adult |
Image: |
UC Davis_1872305 |
|
Specimen Label: |
UC Davis_1872305 |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2021-04-16 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:1757728 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6691294 |
Age: |
postnatal adult |
Image: |
UC Davis_1872286 |
|
Specimen Label: |
UC Davis_1872286 |
Detected: |
true |
Specimen Num: |
12 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2021-04-16 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:1757728 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6691294 |
Age: |
postnatal adult |
Image: |
UC Davis_1872287 |
|
Specimen Label: |
UC Davis_1872287 |
Detected: |
true |
Specimen Num: |
13 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3653200 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-08-30 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1620012 |
Pattern: |
Not Specified |
Stage: |
TS12 |
Assay Id: |
MGI:3653202 |
Age: |
embryonic day 8.0 |
Image: |
1A |
Note: |
Expression is present in the neuroepithelium surrounding the invagination of the developing optic pit. |
Specimen Label: |
1A |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6174350 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-07-25 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1689419 |
Pattern: |
Not Specified |
Stage: |
TS19 |
Assay Id: |
MGI:6190435 |
Age: |
embryonic day 11.5 |
|
|
Specimen Label: |
Table S2 - E11.5 - Gpr98 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6174350 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-07-25 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1689421 |
Pattern: |
Not Specified |
Stage: |
TS21 |
Assay Id: |
MGI:6190435 |
Age: |
embryonic day 13.5 |
|
|
Specimen Label: |
Table S2 - E13.5 - Gpr98 |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6174350 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-07-25 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:1689424 |
Pattern: |
Not Specified |
Stage: |
TS24 |
Assay Id: |
MGI:6190435 |
Age: |
embryonic day 15.5 |
|
|
Specimen Label: |
Table S2 - E15.5 - Gpr98 |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6174350 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-07-25 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:1689426 |
Pattern: |
Not Specified |
Stage: |
TS26 |
Assay Id: |
MGI:6190435 |
Age: |
embryonic day 18.5 |
|
|
Specimen Label: |
Table S2 - E18.5 - Gpr98 |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6174350 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-07-25 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:1689428 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6190435 |
Age: |
postnatal day 4 |
|
|
Specimen Label: |
Table S2 - P4 - Gpr98 |
Detected: |
true |
Specimen Num: |
5 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6174350 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-07-25 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:1689428 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6190435 |
Age: |
postnatal day 14 |
|
|
Specimen Label: |
Table S2 - P14 - Gpr98 |
Detected: |
true |
Specimen Num: |
6 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6174350 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-07-25 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:1689428 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6190435 |
Age: |
postnatal day 28 |
|
|
Specimen Label: |
Table S2 - P28 - Gpr98 |
Detected: |
true |
Specimen Num: |
7 |
|
•
•
•
•
•
|
GXD Expression |
|
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2021-04-16 |
Strength: |
Present |
Sex: |
Female |
Emaps: |
EMAPS:1796228 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6691294 |
Age: |
postnatal adult |
Image: |
UC Davis_1872311 |
|
Specimen Label: |
UC Davis_1872311 |
Detected: |
true |
Specimen Num: |
8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lie MEK |
Year: |
2020 |
Journal: |
Neurochem Res |
Title: |
Pharmacological Characterization of a Betaine/GABA Transporter 1 (BGT1) Inhibitor Displaying an Unusual Biphasic Inhibition Profile and Anti-seizure Effects. |
Volume: |
45 |
Issue: |
7 |
Pages: |
1551-1565 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yagi H |
Year: |
2005 |
Journal: |
J Neurochem |
Title: |
Vlgr1 knockout mice show audiogenic seizure susceptibility. |
Volume: |
92 |
Issue: |
1 |
Pages: |
191-202 |
|
•
•
•
•
•
|
Publication |
First Author: |
Johnson KR |
Year: |
2005 |
Journal: |
Genomics |
Title: |
The Mass1frings mutation underlies early onset hearing impairment in BUB/BnJ mice, a model for the auditory pathology of Usher syndrome IIC. |
Volume: |
85 |
Issue: |
5 |
Pages: |
582-90 |
|
•
•
•
•
•
|
Publication |
First Author: |
Goodyear RJ |
Year: |
2012 |
Journal: |
J Neurosci |
Title: |
Hair bundle defects and loss of function in the vestibular end organs of mice lacking the receptor-like inositol lipid phosphatase PTPRQ. |
Volume: |
32 |
Issue: |
8 |
Pages: |
2762-72 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yagi H |
Year: |
2007 |
Journal: |
Genes Cells |
Title: |
Vlgr1 is required for proper stereocilia maturation of cochlear hair cells. |
Volume: |
12 |
Issue: |
2 |
Pages: |
235-50 |
|
•
•
•
•
•
|
Publication |
First Author: |
van Wijk E |
Year: |
2006 |
Journal: |
Hum Mol Genet |
Title: |
The DFNB31 gene product whirlin connects to the Usher protein network in the cochlea and retina by direct association with USH2A and VLGR1. |
Volume: |
15 |
Issue: |
5 |
Pages: |
751-65 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zallocchi M |
Year: |
2012 |
Journal: |
PLoS One |
Title: |
Role for a novel Usher protein complex in hair cell synaptic maturation. |
Volume: |
7 |
Issue: |
2 |
Pages: |
e30573 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zallocchi M |
Year: |
2012 |
Journal: |
J Neurosci |
Title: |
Regulated vesicular trafficking of specific PCDH15 and VLGR1 variants in auditory hair cells. |
Volume: |
32 |
Issue: |
40 |
Pages: |
13841-59 |
|
•
•
•
•
•
|
Publication |
First Author: |
Grati M |
Year: |
2012 |
Journal: |
J Neurosci |
Title: |
Localization of PDZD7 to the stereocilia ankle-link associates this scaffolding protein with the Usher syndrome protein network. |
Volume: |
32 |
Issue: |
41 |
Pages: |
14288-93 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chen Q |
Year: |
2014 |
Journal: |
J Biol Chem |
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Whirlin and PDZ domain-containing 7 (PDZD7) proteins are both required to form the quaternary protein complex associated with Usher syndrome type 2. |
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289 |
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52 |
Pages: |
36070-88 |
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•
•
•
•
•
|
Publication |
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Zou J |
Year: |
2014 |
Journal: |
Hum Mol Genet |
Title: |
Deletion of PDZD7 disrupts the Usher syndrome type 2 protein complex in cochlear hair cells and causes hearing loss in mice. |
Volume: |
23 |
Issue: |
9 |
Pages: |
2374-90 |
|
•
•
•
•
•
|
Publication |
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Michel V |
Year: |
2020 |
Journal: |
Sci Rep |
Title: |
Interaction of protocadherin-15 with the scaffold protein whirlin supports its anchoring of hair-bundle lateral links in cochlear hair cells. |
Volume: |
10 |
Issue: |
1 |
Pages: |
16430 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zou J |
Year: |
2015 |
Journal: |
Hum Mol Genet |
Title: |
Individual USH2 proteins make distinct contributions to the ankle link complex during development of the mouse cochlear stereociliary bundle. |
Volume: |
24 |
Issue: |
24 |
Pages: |
6944-57 |
|
•
•
•
•
•
|
Publication |
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Maerker T |
Year: |
2008 |
Journal: |
Hum Mol Genet |
Title: |
A novel Usher protein network at the periciliary reloading point between molecular transport machineries in vertebrate photoreceptor cells. |
Volume: |
17 |
Issue: |
1 |
Pages: |
71-86 |
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•
•
•
•
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Publication |
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Libé-Philippot B |
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2017 |
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Proc Natl Acad Sci U S A |
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Auditory cortex interneuron development requires cadherins operating hair-cell mechanoelectrical transduction. |
Volume: |
114 |
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30 |
Pages: |
7765-7774 |
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•
•
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Publication |
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Zou J |
Year: |
2011 |
Journal: |
Invest Ophthalmol Vis Sci |
Title: |
Whirlin replacement restores the formation of the USH2 protein complex in whirlin knockout photoreceptors. |
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52 |
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5 |
Pages: |
2343-51 |
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•
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•
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Publication |
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Zallocchi M |
Year: |
2010 |
Journal: |
Biochemistry |
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Biochemical characterization of native Usher protein complexes from a vesicular subfraction of tracheal epithelial cells. |
Volume: |
49 |
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6 |
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1236-47 |
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2007 |
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J Neurosci |
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A forward genetics screen in mice identifies recessive deafness traits and reveals that pejvakin is essential for outer hair cell function. |
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2163-75 |
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Publication |
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J Cell Biol |
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Class III myosins shape the auditory hair bundles by limiting microvilli and stereocilia growth. |
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212 |
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231-44 |
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Brain Res |
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Strain background effects and genetic modifiers of hearing in mice. |
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Int J Biochem Cell Biol |
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Usher protein functions in hair cells and photoreceptors. |
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46 |
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80-9 |
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Annu Rev Genet |
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Nat Commun |
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Novel gene function revealed by mouse mutagenesis screens for models of age-related disease. |
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Proc Natl Acad Sci U S A |
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2011 |
Journal: |
PLoS Biol |
Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Volume: |
9 |
Issue: |
1 |
Pages: |
e1000582 |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
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Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
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Publication |
First Author: |
MGI Genome Annotation Group and UniGene Staff |
Year: |
2015 |
Journal: |
Database Download |
Title: |
MGI-UniGene Interconnection Effort |
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Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
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Title: |
Annotation inferences using phylogenetic trees |
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Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
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Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
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Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
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Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
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Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
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Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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UniProt Feature |
Begin: |
29 |
Description: |
ADGRV1 subunit alpha |
Type: |
chain |
End: |
5883 |
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UniProt Feature |
Begin: |
5884 |
Description: |
ADGRV1 subunit beta |
Type: |
chain |
End: |
6298 |
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Component |
Name: |
ADGRV1 subunit alpha |
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Component |
Name: |
ADGRV1 subunit beta |
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Allele |
Name: |
solute carrier family 4, sodium bicarbonate cotransporter, member 7; targeted mutation 1, Ira Kurtz |
Allele Type: |
Targeted |
Attribute String: |
Null/knockout |
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Allele |
Name: |
adhesion G protein-coupled receptor V1; targeted mutation 1, Perrin C White |
Allele Type: |
Targeted |
Attribute String: |
Null/knockout |
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Allele |
Name: |
adhesion G protein-coupled receptor V1; targeted mutation 1, Makoto Sato |
Allele Type: |
Targeted |
Attribute String: |
Null/knockout |
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Allele |
Name: |
adhesion G protein-coupled receptor V1; mutation 1 |
Allele Type: |
Spontaneous |
Attribute String: |
Null/knockout |
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DO Term |
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Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
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Genotype |
Symbol: |
Adgrv1/Adgrv1 |
Background: |
involves: 129S1/Sv * C57BL/6J |
Zygosity: |
hm |
Has Mutant Allele: |
true |
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Genotype |
Symbol: |
Adgrv1/Adgrv1 |
Background: |
involves: 129P2/OlaHsd * C57BL/6J |
Zygosity: |
hm |
Has Mutant Allele: |
true |
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Genotype |
Symbol: |
Slc4a7/Slc4a7 |
Background: |
involves: 129S5/SvEvBrd * C57BL/6 |
Zygosity: |
hm |
Has Mutant Allele: |
true |
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DO Term |
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Genotype |
Symbol: |
Adgrv1/Adgrv1 |
Background: |
CBACa.KM-Adgrv1 |
Zygosity: |
hm |
Has Mutant Allele: |
true |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
2238
 |
Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1154
 |
Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1218
 |
Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
616
 |
Fragment?: |
false |
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Gene |
Type: |
gene |
Organism: |
human |
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