Type |
Details |
Score |
Publication |
First Author: |
Lieberam I |
Year: |
2005 |
Journal: |
Neuron |
Title: |
A Cxcl12-CXCR4 chemokine signaling pathway defines the initial trajectory of mammalian motor axons. |
Volume: |
47 |
Issue: |
5 |
Pages: |
667-79 |
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•
•
•
•
•
|
Publication |
First Author: |
IUIS/WHO Subcommittee on Chemokine Nomenclature. |
Year: |
2002 |
Journal: |
J Immunol Methods |
Title: |
Chemokine/chemokine receptor nomenclature. |
Volume: |
262 |
Issue: |
1-2 |
Pages: |
1-3 |
|
•
•
•
•
•
|
Publication |
First Author: |
MouseBookTM |
Year: |
2005 |
Journal: |
Unpublished |
Title: |
Information obtained from MouseBookTM, Medical Research Council Mammalian Genetics Unit, Harwell, UK. |
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•
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•
•
•
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Publication |
First Author: |
Shanghai Model Organisms Center |
Year: |
2017 |
Journal: |
MGI Direct Data Submission |
Title: |
Information obtained from the Shanghai Model Organisms Center (SMOC), Shanghai, China |
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•
•
•
•
•
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Publication |
First Author: |
European Mouse Mutant Archive |
Year: |
2003 |
Journal: |
Unpublished |
Title: |
Information obtained from the European Mouse Mutant Archive (EMMA) |
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•
•
•
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•
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Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2016 |
|
Title: |
Automatic assignment of GO terms using logical inference, based on on inter-ontology links |
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|
•
•
•
•
•
|
Publication |
First Author: |
Lennon G |
Year: |
1999 |
Journal: |
Database Download |
Title: |
WashU-HHMI Mouse EST Project |
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•
•
•
•
•
|
Publication |
First Author: |
GUDMAP Consortium |
Year: |
2004 |
Journal: |
www.gudmap.org |
Title: |
GUDMAP: the GenitoUrinary Development Molecular Anatomy Project |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC) |
Year: |
2014 |
Journal: |
Database Release |
Title: |
Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database |
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•
•
•
•
•
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Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt |
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•
•
•
•
•
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Publication |
First Author: |
DDB, FB, MGI, GOA, ZFIN curators |
Year: |
2001 |
|
Title: |
Gene Ontology annotation through association of InterPro records with GO terms |
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•
•
•
•
•
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Publication |
First Author: |
Magdaleno S |
Year: |
2006 |
Journal: |
PLoS Biol |
Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
Volume: |
4 |
Issue: |
4 |
Pages: |
e86 |
|
•
•
•
•
•
|
Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kawai J |
Year: |
2001 |
Journal: |
Nature |
Title: |
Functional annotation of a full-length mouse cDNA collection. |
Volume: |
409 |
Issue: |
6821 |
Pages: |
685-90 |
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•
•
•
•
•
|
Publication |
First Author: |
Adams DJ |
Year: |
2024 |
Journal: |
Nature |
Title: |
Genetic determinants of micronucleus formation in vivo. |
Volume: |
627 |
Issue: |
8002 |
Pages: |
130-136 |
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•
•
•
•
•
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Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
|
Title: |
GemPharmatech Website. |
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•
•
•
•
•
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Publication |
First Author: |
Cyagen Biosciences Inc. |
Year: |
2022 |
|
Title: |
Cyagen Biosciences Website. |
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•
•
•
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•
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Publication |
First Author: |
GOA curators |
Year: |
2016 |
|
Title: |
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara |
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•
•
•
•
•
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Publication |
First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
Year: |
2004 |
Journal: |
Database Release |
Title: |
Mouse T31 Radiation Hybrid Data Load |
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•
•
•
•
•
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Publication |
First Author: |
Okazaki Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
563-73 |
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•
•
•
•
•
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Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
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|
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•
•
•
•
•
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Publication |
First Author: |
Diez-Roux G |
Year: |
2011 |
Journal: |
PLoS Biol |
Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Volume: |
9 |
Issue: |
1 |
Pages: |
e1000582 |
|
•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
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•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
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•
•
•
•
•
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Publication |
First Author: |
MGI Genome Annotation Group and UniGene Staff |
Year: |
2015 |
Journal: |
Database Download |
Title: |
MGI-UniGene Interconnection Effort |
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•
•
•
•
•
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Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
|
Title: |
Annotation inferences using phylogenetic trees |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
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•
•
•
•
•
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Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
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•
•
•
•
•
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Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
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|
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
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|
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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•
•
•
•
•
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Publication |
First Author: |
Uehara S |
Year: |
2006 |
Journal: |
J Immunol |
Title: |
Premature expression of chemokine receptor CCR9 impairs T cell development. |
Volume: |
176 |
Issue: |
1 |
Pages: |
75-84 |
|
•
•
•
•
•
|
Publication |
First Author: |
Elgueta R |
Year: |
2008 |
Journal: |
J Immunol |
Title: |
Imprinting of CCR9 on CD4 T cells requires IL-4 signaling on mesenteric lymph node dendritic cells. |
Volume: |
180 |
Issue: |
10 |
Pages: |
6501-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Pathak M |
Year: |
2020 |
Journal: |
Eur J Immunol |
Title: |
CCR9 signaling in dendritic cells drives the differentiation of Foxp3+ Tregs and suppresses the allergic IgE response in the gut. |
Volume: |
50 |
Issue: |
3 |
Pages: |
404-417 |
|
•
•
•
•
•
|
Publication |
First Author: |
Park C |
Year: |
2019 |
Journal: |
J Immunol |
Title: |
Obesity Modulates Intestinal Intraepithelial T Cell Persistence, CD103 and CCR9 Expression, and Outcome in Dextran Sulfate Sodium-Induced Colitis. |
Volume: |
203 |
Issue: |
12 |
Pages: |
3427-3435 |
|
•
•
•
•
•
|
Publication |
First Author: |
Singh S |
Year: |
2004 |
Journal: |
Clin Cancer Res |
Title: |
Expression and functional role of CCR9 in prostate cancer cell migration and invasion. |
Volume: |
10 |
Issue: |
24 |
Pages: |
8743-50 |
|
•
•
•
•
•
|
Publication |
First Author: |
Papadakis KA |
Year: |
2000 |
Journal: |
J Immunol |
Title: |
The role of thymus-expressed chemokine and its receptor CCR9 on lymphocytes in the regional specialization of the mucosal immune system. |
Volume: |
165 |
Issue: |
9 |
Pages: |
5069-76 |
|
•
•
•
•
•
|
Allele |
Name: |
C-C motif chemokine receptor 9; endonuclease-mediated mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Null/knockout |
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•
•
•
•
•
|
Publication |
First Author: |
Carramolino L |
Year: |
2001 |
Journal: |
Blood |
Title: |
Expression of CCR9 beta-chemokine receptor is modulated in thymocyte differentiation and is selectively maintained in CD8(+) T cells from secondary lymphoid organs. |
Volume: |
97 |
Issue: |
4 |
Pages: |
850-7 |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, mutant strain, endonuclease-mediated mutation |
|
•
•
•
•
•
|
Allele |
Name: |
C-C motif chemokine receptor 9; targeted mutation 1, Conrad C Bleul |
Allele Type: |
Targeted |
Attribute String: |
Null/knockout, Reporter |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Ccr9/Ccr9 |
Background: |
involves: 129S1/Sv * 129X1/SvJ * C57BL/6 |
Zygosity: |
hm |
Has Mutant Allele: |
true |
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•
•
•
•
•
|
Publication |
First Author: |
Lucas B |
Year: |
2015 |
Journal: |
Eur J Immunol |
Title: |
CCRL1/ACKR4 is expressed in key thymic microenvironments but is dispensable for T lymphopoiesis at steady state in adult mice. |
Volume: |
45 |
Issue: |
2 |
Pages: |
574-83 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
67
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
Atypical chemokine receptor 2 (ACKR2/D6) [], previously known as CCR9 or CCR10 [], is a chemokine-scavenging receptor or chemokine decoy receptor. It is capable of internalising and effectively scavenging its ligands through beta-arrestin-dependent activation of the cofilin pathway [, ]. ACKR2 is highly promiscuous and can bind the majority of (if not all) inflammatory CC-chemokines []. It plays an essential role in the resolution of the inflammatory response [, , ]. Although it lacks the canonical DRYLAIV motif necessary for classical signalling, ACKR2/D6 may be involved in 'atypical' signalling pathways downstream of ligand binding []. It has been shown to be involved in regulating vessel density []. |
|
•
•
•
•
•
|
Publication |
First Author: |
Youn BS |
Year: |
1999 |
Journal: |
Blood |
Title: |
TECK, an efficacious chemoattractant for human thymocytes, uses GPR-9-6/CCR9 as a specific receptor. |
Volume: |
94 |
Issue: |
7 |
Pages: |
2533-6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Honczarenko M |
Year: |
2006 |
Journal: |
Stem Cells |
Title: |
Human bone marrow stromal cells express a distinct set of biologically functional chemokine receptors. |
Volume: |
24 |
Issue: |
4 |
Pages: |
1030-41 |
|
•
•
•
•
•
|
Publication |
First Author: |
Papadakis KA |
Year: |
2001 |
Journal: |
Gastroenterology |
Title: |
CCR9-positive lymphocytes and thymus-expressed chemokine distinguish small bowel from colonic Crohn's disease. |
Volume: |
121 |
Issue: |
2 |
Pages: |
246-54 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
Chemokines (chemotactic cytokines) are a family of chemoattractant molecules. They attract leukocytes to areas of inflammation and lesions, and play a key role in leukocyte activation. Originally defined as host defense proteins, chemokines are now known to play a much broader biological role []. They have a wide range of effects in many different cell types beyond the immune system, including, for example, various cells of the central nervous system [], and endothelial cells, where they may act as either angiogenic or angiostatic factors [].The chemokine family is divided into four classes based on the number and spacing of their conserved cysteines: 2 Cys residues may be adjacent (the CC family); separated by an intervening residue (the CXC family); have only one of the first two Cys residues (C chemokines); or contain both cysteines, separated by three intervening residues (CX3C chemokines).Chemokines exert their effects by binding to rhodopsin-like G protein-coupled receptors on the surface of cells. Following interaction with their specific chemokine ligands, chemokine receptors trigger a flux in intracellular calcium ions, which cause a cellular response, including the onset of chemotaxis. There are over fifty distinct chemokines and least 18 human chemokine receptors []. Although the receptors bind only a single class of chemokines, they often bind several members of the same class with high affinity. Chemokine receptors are preferentially expressed on important functional subsets of dendritic cells, monocytes and lymphocytes, including Langerhans cells and T helper cells [, ]. Chemokines and their receptors can also be subclassified into homeostatic leukocyte homing molecules (CXCR4, CXCR5, CCR7, CCR9) versus inflammatory/inducible molecules (CXCR1, CXCR2, CXCR3, CCR1-6, CX3CR1).CC chemokine receptors are a subfamily of the chemokine receptors that specifically bind and respond to cytokines of the CC chemokine family. There are currently ten members of the CC chemokine receptor subfamily, named CCR1 to 10. The receptors receptors are found in monocytes, lymphocytes, basophils and eosinophils.This entry represents CC chemokine receptor 9 (CCR9), which was previously designated as the orphan receptors GPR28 and GPR 9-6. CCR9 is expressed predominantly in the thymus, in both mature and immature T cells, and is also found in the lymph nodes, spleen, glomerular podocytes, bone marrow stromal cells and the small intestine [, , , , ]. Transfected cells expressing CCR9 receptor bind specifically to CCL25 (also known as Thymus-Expressed Chemokine) []. This interaction may play a pivotal role in T-cell migration in the thymus []. CCR9 activation has also been shown to influence cancer cell migration, invasion and matrix metallopeptidase expression, which together may affect prostate cancer metastasis []. |
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•
•
•
•
•
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Publication |
First Author: |
Gosling J |
Year: |
2000 |
Journal: |
J Immunol |
Title: |
Cutting edge: identification of a novel chemokine receptor that binds dendritic cell- and T cell-active chemokines including ELC, SLC, and TECK. |
Volume: |
164 |
Issue: |
6 |
Pages: |
2851-6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Vinet J |
Year: |
2013 |
Journal: |
Br J Pharmacol |
Title: |
Inhibition of CXCR3-mediated chemotaxis by the human chemokine receptor-like protein CCX-CKR. |
Volume: |
168 |
Issue: |
6 |
Pages: |
1375-87 |
|
•
•
•
•
•
|
Publication |
First Author: |
Comerford I |
Year: |
2006 |
Journal: |
Eur J Immunol |
Title: |
The chemokine receptor CCX-CKR mediates effective scavenging of CCL19 in vitro. |
Volume: |
36 |
Issue: |
7 |
Pages: |
1904-16 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
Just like classical chemokine receptors, atypical chemokine receptors (ACKRs) are seven-transmembrane-helix (7TM) receptors that bind chemokines []. However, they lack the canonical DRYLAIV motif necessary for GPCR coupling to G proteins and induction of classical signalling pathways. Instead, ACKRs internalise their chemokine ligands, which may subsequently affect chemokine availability. The ACKR family comprises five members: Duffy Antigen Receptor for Chemokines (DARC, ACKR1), D6 (ACKR2), CXCR7 (ACKR3), CCRL1 (ACKR4) and CCRL2 (ACKR5) [].Atypical chemokine receptor 4 (ACKR4/CCRL1/CCX-CKR) binds and scavenges the ligands of the chemokine receptors CCR7 and CCR9 (CCL19/CCL21 and CCL25, respectively) and targets them for subsequent lysosomal degradation [, ]. Apart from being a scavenger for chemokines, it may prevent CXCR3-induced chemotaxis by heteromerisation []. ACKR4 appears to have a mayor role in normal thymus development and function []. |
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•
•
•
•
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Publication |
First Author: |
Choi YI |
Year: |
2008 |
Journal: |
Immunity |
Title: |
PlexinD1 glycoprotein controls migration of positively selected thymocytes into the medulla. |
Volume: |
29 |
Issue: |
6 |
Pages: |
888-98 |
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•
•
•
•
•
|
Publication |
First Author: |
Miyazaki K |
Year: |
2002 |
Journal: |
Immunol Lett |
Title: |
Chemokine-mediated thymopoiesis is regulated by a mammalian Polycomb group gene, mel-18. |
Volume: |
80 |
Issue: |
2 |
Pages: |
139-43 |
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•
•
•
•
•
|
Publication |
First Author: |
Raynor JL |
Year: |
2024 |
Journal: |
Immunity |
Title: |
CRISPR screens unveil nutrient-dependent lysosomal and mitochondrial nodes impacting intestinal tissue-resident memory CD8(+) T cell formation. |
Volume: |
57 |
Issue: |
11 |
Pages: |
2597-2614.e13 |
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•
•
•
•
•
|
Publication |
First Author: |
Yun TJ |
Year: |
2016 |
Journal: |
Cell Metab |
Title: |
Indoleamine 2,3-Dioxygenase-Expressing Aortic Plasmacytoid Dendritic Cells Protect against Atherosclerosis by Induction of Regulatory T Cells. |
Volume: |
23 |
Issue: |
5 |
Pages: |
852-66 |
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•
•
•
•
•
|
Publication |
First Author: |
Tenno M |
Year: |
2018 |
Journal: |
J Exp Med |
Title: |
Cbfβ2 controls differentiation of and confers homing capacity to prethymic progenitors. |
Volume: |
215 |
Issue: |
2 |
Pages: |
595-610 |
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•
•
•
•
•
|
Publication |
First Author: |
Ishikawa J |
Year: |
2023 |
Journal: |
Front Immunol |
Title: |
IL-21 is required for the maintenance and pathogenesis of murine Vγ4(+) IL-17-producing γδT cells. |
Volume: |
14 |
|
Pages: |
1211620 |
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•
•
•
•
•
|
Publication |
First Author: |
Abd Alla J |
Year: |
2010 |
Journal: |
J Biol Chem |
Title: |
Angiotensin-converting enzyme inhibition down-regulates the pro-atherogenic chemokine receptor 9 (CCR9)-chemokine ligand 25 (CCL25) axis. |
Volume: |
285 |
Issue: |
30 |
Pages: |
23496-505 |
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•
•
•
•
•
|
Publication |
First Author: |
Yu S |
Year: |
2008 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Failure of T cell homing, reduced CD4/CD8alphaalpha intraepithelial lymphocytes, and inflammation in the gut of vitamin D receptor KO mice. |
Volume: |
105 |
Issue: |
52 |
Pages: |
20834-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
García-Zepeda EA |
Year: |
2007 |
Journal: |
Immunology |
Title: |
Janus kinase 3-deficient T lymphocytes have an intrinsic defect in CCR7-mediated homing to peripheral lymphoid organs. |
Volume: |
122 |
Issue: |
2 |
Pages: |
247-60 |
|
•
•
•
•
•
|
Publication |
First Author: |
Soldevila G |
Year: |
2004 |
Journal: |
Immunology |
Title: |
Impaired chemokine-induced migration during T-cell development in the absence of Jak 3. |
Volume: |
112 |
Issue: |
2 |
Pages: |
191-200 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ambriz-Peña X |
Year: |
2014 |
Journal: |
PLoS One |
Title: |
Jak3 enables chemokine-dependent actin cytoskeleton reorganization by regulating cofilin and Rac/Rhoa GTPases activation. |
Volume: |
9 |
Issue: |
2 |
Pages: |
e88014 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wang C |
Year: |
2013 |
Journal: |
J Exp Med |
Title: |
BATF is required for normal expression of gut-homing receptors by T helper cells in response to retinoic acid. |
Volume: |
210 |
Issue: |
3 |
Pages: |
475-89 |
|
•
•
•
•
•
|
Publication |
First Author: |
Cosway EJ |
Year: |
2018 |
Journal: |
J Immunol |
Title: |
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