Type |
Details |
Score |
Publication |
First Author: |
MGD Nomenclature Committee |
Year: |
1995 |
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Title: |
Nomenclature Committee Use |
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•
•
•
•
•
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Publication |
First Author: |
Zambrowicz BP |
Year: |
2003 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. |
Volume: |
100 |
Issue: |
24 |
Pages: |
14109-14 |
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•
•
•
•
•
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Publication |
First Author: |
Skarnes WC |
Year: |
2011 |
Journal: |
Nature |
Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
Volume: |
474 |
Issue: |
7351 |
Pages: |
337-42 |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI) |
Year: |
2008 |
Journal: |
Database Download |
Title: |
Mouse Gene Trap Data Load from dbGSS |
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•
•
•
•
•
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Publication |
First Author: |
AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators |
Year: |
2011 |
|
Title: |
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity |
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•
•
•
•
•
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Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping |
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•
•
•
•
•
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Publication |
First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
Year: |
2004 |
Journal: |
Database Release |
Title: |
Mouse T31 Radiation Hybrid Data Load |
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•
•
•
•
•
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Publication |
First Author: |
Okazaki Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
563-73 |
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
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•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
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•
•
•
•
•
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Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
|
Title: |
Annotation inferences using phylogenetic trees |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
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•
•
•
•
•
|
Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
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•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
|
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•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
|
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•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
|
|
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•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
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•
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•
|
HT Experiment |
|
Experiment Type: |
RNA-Seq |
Study Type: |
WT vs. Mutant |
Source: |
GEO |
|
•
•
•
•
•
|
Allele |
Name: |
CCR4-NOT transcription complex, subunit 4; endonuclease-mediated mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Null/knockout |
|
•
•
•
•
•
|
Interaction Experiment |
Description: |
Protein Degradation of RNA Polymerase II-Association Factor 1(PAF1) Is Controlled by CNOT4 and 26S Proteasome. |
|
•
•
•
•
•
|
Publication |
First Author: |
Sun HY |
Year: |
2015 |
Journal: |
PLoS One |
Title: |
Protein Degradation of RNA Polymerase II-Association Factor 1(PAF1) Is Controlled by CNOT4 and 26S Proteasome. |
Volume: |
10 |
Issue: |
5 |
Pages: |
e0125599 |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
575
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
572
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
713
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Morel AP |
Year: |
2003 |
Journal: |
J Cell Sci |
Title: |
BTG2 antiproliferative protein interacts with the human CCR4 complex existing in vivo in three cell-cycle-regulated forms. |
Volume: |
116 |
Issue: |
Pt 14 |
Pages: |
2929-36 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
CNOT8 is a subunit of the CCR4-NOT core complex that contains CCRN4L, CHAF1A, CHAF1B, CNOT1, CNOT2, CNOT3, CNOT4 and CNOT8. The CCR4-NOT complex functions as general transcription regulation complex []. |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhu J |
Year: |
2024 |
Journal: |
Respir Res |
Title: |
TNKS1BP1 mediates AECII senescence and radiation induced lung injury through suppressing EEF2 degradation. |
Volume: |
25 |
Issue: |
1 |
Pages: |
299 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
NOT4, also known as CNOT4 or MOT2, is a component of the CCR4-NOT complex, a global negative regulator of RNA polymerase II transcription []. It associates with polysomes and contributes to the negative regulation of protein synthesis [, , , , , , , ]. NOT4 functions as an E3 ubiquitin-protein ligase that interacts with a specific E2, Ubc4/5 in yeast, and the orthologue UbcH5B in humans, and ubiquitinates a wide range of substrates, including ribosome-associated factors []. Thus, it plays a role in cotranslational quality control (QC) through ribosome-associated ubiquitination and degradation of aberrant peptides. NOT4 contains a C4C4-type RING finger motif, whose overall folding is similar to that of the C3HC4-type RING-HC finger, a central RNA recognition motif (RRM), and a C-terminal domain predicted to be unstructured []. |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
75
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Hanzawa H |
Year: |
2001 |
Journal: |
J Biol Chem |
Title: |
The structure of the C4C4 ring finger of human NOT4 reveals features distinct from those of C3HC4 RING fingers. |
Volume: |
276 |
Issue: |
13 |
Pages: |
10185-90 |
|
•
•
•
•
•
|
Publication |
First Author: |
Albert TK |
Year: |
2002 |
Journal: |
EMBO J |
Title: |
Identification of a ubiquitin-protein ligase subunit within the CCR4-NOT transcription repressor complex. |
Volume: |
21 |
Issue: |
3 |
Pages: |
355-64 |
|
•
•
•
•
•
|
Publication |
First Author: |
Grönholm J |
Year: |
2012 |
Journal: |
FASEB J |
Title: |
Not4 enhances JAK/STAT pathway-dependent gene expression in Drosophila and in human cells. |
Volume: |
26 |
Issue: |
3 |
Pages: |
1239-50 |
|
•
•
•
•
•
|
Publication |
First Author: |
Preissler S |
Year: |
2015 |
Journal: |
EMBO J |
Title: |
Not4-dependent translational repression is important for cellular protein homeostasis in yeast. |
Volume: |
34 |
Issue: |
14 |
Pages: |
1905-24 |
|
•
•
•
•
•
|
Publication |
First Author: |
Cotobal C |
Year: |
2015 |
Journal: |
Epigenetics Chromatin |
Title: |
Role of Ccr4-Not complex in heterochromatin formation at meiotic genes and subtelomeres in fission yeast. |
Volume: |
8 |
|
Pages: |
28 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bhaskar V |
Year: |
2015 |
Journal: |
Structure |
Title: |
Architecture of the ubiquitylation module of the yeast Ccr4-Not complex. |
Volume: |
23 |
Issue: |
5 |
Pages: |
921-928 |
|
•
•
•
•
•
|
Publication |
First Author: |
Panasenko OO |
Year: |
2014 |
Journal: |
Front Genet |
Title: |
The role of the E3 ligase Not4 in cotranslational quality control. |
Volume: |
5 |
|
Pages: |
141 |
|
•
•
•
•
•
|
Publication |
First Author: |
Halter D |
Year: |
2014 |
Journal: |
PLoS One |
Title: |
The Not4 E3 ligase and CCR4 deadenylase play distinct roles in protein quality control. |
Volume: |
9 |
Issue: |
1 |
Pages: |
e86218 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
292
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Dominguez C |
Year: |
2004 |
Journal: |
Structure |
Title: |
Structural model of the UbcH5B/CNOT4 complex revealed by combining NMR, mutagenesis, and docking approaches. |
Volume: |
12 |
Issue: |
4 |
Pages: |
633-44 |
|
•
•
•
•
•
|
Publication |
First Author: |
Matsuoka S |
Year: |
2007 |
Journal: |
Science |
Title: |
ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage. |
Volume: |
316 |
Issue: |
5828 |
Pages: |
1160-6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Albert TK |
Year: |
2000 |
Journal: |
Nucleic Acids Res |
Title: |
Isolation and characterization of human orthologs of yeast CCR4-NOT complex subunits. |
Volume: |
28 |
Issue: |
3 |
Pages: |
809-17 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
642
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
572
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
710
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Guo A |
Year: |
2014 |
Journal: |
Mol Cell Proteomics |
Title: |
Immunoaffinity enrichment and mass spectrometry analysis of protein methylation. |
Volume: |
13 |
Issue: |
1 |
Pages: |
372-87 |
|
•
•
•
•
•
|
Publication |
First Author: |
Trost M |
Year: |
2009 |
Journal: |
Immunity |
Title: |
The phagosomal proteome in interferon-gamma-activated macrophages. |
Volume: |
30 |
Issue: |
1 |
Pages: |
143-54 |
|
•
•
•
•
•
|
Publication |
First Author: |
Gerhard DS |
Year: |
2004 |
Journal: |
Genome Res |
Title: |
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |
Volume: |
14 |
Issue: |
10B |
Pages: |
2121-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Huttlin EL |
Year: |
2010 |
Journal: |
Cell |
Title: |
A tissue-specific atlas of mouse protein phosphorylation and expression. |
Volume: |
143 |
Issue: |
7 |
Pages: |
1174-89 |
|
•
•
•
•
•
|
Publication |
First Author: |
Church DM |
Year: |
2009 |
Journal: |
PLoS Biol |
Title: |
Lineage-specific biology revealed by a finished genome assembly of the mouse. |
Volume: |
7 |
Issue: |
5 |
Pages: |
e1000112 |
|
•
•
•
•
•
|