| Type |
Details |
Score |
| Publication |
| First Author: |
Cuadrado A |
| Year: |
2010 |
| Journal: |
EMBO J |
| Title: |
Essential role of p18Hamlet/SRCAP-mediated histone H2A.Z chromatin incorporation in muscle differentiation. |
| Volume: |
29 |
| Issue: |
12 |
| Pages: |
2014-25 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Jeong YJ |
| Year: |
2005 |
| Journal: |
Mol Reprod Dev |
| Title: |
Optimization of real time RT-PCR methods for the analysis of gene expression in mouse eggs and preimplantation embryos. |
| Volume: |
71 |
| Issue: |
3 |
| Pages: |
284-9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Kooistra M |
| Year: |
2013 |
| Journal: |
Biol Reprod |
| Title: |
Folate transport in mouse cumulus-oocyte complexes and preimplantation embryos. |
| Volume: |
89 |
| Issue: |
3 |
| Pages: |
63 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
He XD |
| Year: |
2024 |
| Journal: |
Biol Reprod |
| Title: |
Overlapping peri-implantation phenotypes of ZNHIT1 and ZNHIT2 despite distinct functions during early mouse development. |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Shen T |
| Year: |
2018 |
| Journal: |
Nucleic Acids Res |
| Title: |
Brain-specific deletion of histone variant H2A.z results in cortical neurogenesis defects and neurodevelopmental disorder. |
| Volume: |
46 |
| Issue: |
5 |
| Pages: |
2290-2307 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Popova EY |
| Year: |
2013 |
| Journal: |
J Biol Chem |
| Title: |
Developmentally regulated linker histone H1c promotes heterochromatin condensation and mediates structural integrity of rod photoreceptors in mouse retina. |
| Volume: |
288 |
| Issue: |
24 |
| Pages: |
17895-907 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Wang S |
| Year: |
2006 |
| Journal: |
PLoS Genet |
| Title: |
Genetic and genomic analysis of a fat mass trait with complex inheritance reveals marked sex specificity. |
| Volume: |
2 |
| Issue: |
2 |
| Pages: |
e15 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ancelin K |
| Year: |
2016 |
| Journal: |
Elife |
| Title: |
Maternal LSD1/KDM1A is an essential regulator of chromatin and transcription landscapes during zygotic genome activation. |
| Volume: |
5 |
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Siyanov V |
| Year: |
2013 |
| Journal: |
Biol Reprod |
| Title: |
NHE1 is the sodium-hydrogen exchanger active in acute intracellular pH regulation in preimplantation mouse embryos. |
| Volume: |
88 |
| Issue: |
6 |
| Pages: |
157 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Falco G |
| Year: |
2006 |
| Journal: |
Reprod Biomed Online |
| Title: |
Use of Chuk as an internal standard suitable for quantitative RT-PCR in mouse preimplantation embryos. |
| Volume: |
13 |
| Issue: |
3 |
| Pages: |
394-403 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Barratt KS |
| Year: |
2018 |
| Journal: |
Mamm Genome |
| Title: |
Identification of reference genes suitable for RT-qPCR studies of murine gastrulation and patterning. |
| Volume: |
29 |
| Issue: |
9-10 |
| Pages: |
656-662 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Misawa K |
| Year: |
2000 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
A method to identify cDNAs based on localization of green fluorescent protein fusion products. |
| Volume: |
97 |
| Issue: |
7 |
| Pages: |
3062-6 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Li Z |
| Year: |
2019 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Neural progenitor cells mediated by H2A.Z.2 regulate microglial development via Cxcl14 in the embryonic brain. |
| Volume: |
116 |
| Issue: |
48 |
| Pages: |
24122-24132 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Tang F |
| Year: |
2007 |
| Journal: |
Genes Dev |
| Title: |
Maternal microRNAs are essential for mouse zygotic development. |
| Volume: |
21 |
| Issue: |
6 |
| Pages: |
644-8 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Park YK |
| Year: |
2005 |
| Journal: |
Genesis |
| Title: |
Gene expression profile analysis of mouse colon embryonic development. |
| Volume: |
41 |
| Issue: |
1 |
| Pages: |
1-12 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Xu M |
| Year: |
2021 |
| Journal: |
Development |
| Title: |
The SRCAP chromatin remodeling complex promotes oxidative metabolism during prenatal heart development. |
| Volume: |
148 |
| Issue: |
8 |
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Lui JH |
| Year: |
2014 |
| Journal: |
Nature |
| Title: |
Radial glia require PDGFD-PDGFRβ signalling in human but not mouse neocortex. |
| Volume: |
515 |
| Issue: |
7526 |
| Pages: |
264-8 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Li H |
| Year: |
2006 |
| Journal: |
Mol Cell Neurosci |
| Title: |
Potential target genes of EMX2 include Odz/Ten-M and other gene families with implications for cortical patterning. |
| Volume: |
33 |
| Issue: |
2 |
| Pages: |
136-49 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Easterday MC |
| Year: |
2003 |
| Journal: |
Dev Biol |
| Title: |
Neural progenitor genes. Germinal zone expression and analysis of genetic overlap in stem cell populations. |
| Volume: |
264 |
| Issue: |
2 |
| Pages: |
309-22 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Gineste C |
| Year: |
2013 |
| Journal: |
Neuromuscul Disord |
| Title: |
In vivo and in vitro investigations of heterozygous nebulin knock-out mice disclose a mild skeletal muscle phenotype. |
| Volume: |
23 |
| Issue: |
4 |
| Pages: |
357-69 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
The RIKEN BioResource Center |
| Year: |
2006 |
| Journal: |
Unpublished |
| Title: |
Information obtained from The RIKEN BioResource Center |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Birgit Meldal and Sandra Orchard (1). (1) European Bioinformatics Institute (EBI), Hinxton, Cambridgeshire, United Kingdom |
| Year: |
2023 |
|
| Title: |
Manual transfer of experimentally-verified manual GO annotation data to homologous complexes by curator judgment of sequence, composition and function similarity |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2003 |
|
| Title: |
Data Curation Using Mouse Genome Assembly |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Hansen J |
| Year: |
2003 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. |
| Volume: |
100 |
| Issue: |
17 |
| Pages: |
9918-22 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
The Jackson Laboratory |
| Year: |
2012 |
| Journal: |
MGI Direct Data Submission |
| Title: |
Alleles produced for the KOMP project by The Jackson Laboratory |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Hansen GM |
| Year: |
2008 |
| Journal: |
Genome Res |
| Title: |
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. |
| Volume: |
18 |
| Issue: |
10 |
| Pages: |
1670-9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
DDB, FB, MGI, GOA, ZFIN curators |
| Year: |
2001 |
|
| Title: |
Gene Ontology annotation through association of InterPro records with GO terms |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2003 |
|
| Title: |
MGI Sequence Curation Reference |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Bedogni F |
| Year: |
2021 |
| Journal: |
Front Mol Neurosci |
| Title: |
Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. |
| Volume: |
14 |
|
| Pages: |
686034 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Wellcome Trust Sanger Institute |
| Year: |
2009 |
| Journal: |
MGI Direct Data Submission |
| Title: |
Alleles produced for the KOMP project by the Wellcome Trust Sanger Institute |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Carninci P |
| Year: |
2005 |
| Journal: |
Science |
| Title: |
The transcriptional landscape of the mammalian genome. |
| Volume: |
309 |
| Issue: |
5740 |
| Pages: |
1559-63 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
MGD Nomenclature Committee |
| Year: |
1995 |
|
| Title: |
Nomenclature Committee Use |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Zambrowicz BP |
| Year: |
2003 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. |
| Volume: |
100 |
| Issue: |
24 |
| Pages: |
14109-14 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI) |
| Year: |
2008 |
| Journal: |
Database Download |
| Title: |
Mouse Gene Trap Data Load from dbGSS |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC) |
| Year: |
2014 |
| Journal: |
Database Release |
| Title: |
Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
The Gene Ontology Consortium |
| Year: |
2014 |
|
| Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-rat orthologs |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Magdaleno S |
| Year: |
2006 |
| Journal: |
PLoS Biol |
| Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
| Volume: |
4 |
| Issue: |
4 |
| Pages: |
e86 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
The Gene Ontology Consortium |
| Year: |
2010 |
|
| Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
|
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|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Diez-Roux G |
| Year: |
2011 |
| Journal: |
PLoS Biol |
| Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
| Volume: |
9 |
| Issue: |
1 |
| Pages: |
e1000582 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2002 |
|
| Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2010 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
|
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|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
| Year: |
2010 |
|
| Title: |
Annotation inferences using phylogenetic trees |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
| Year: |
2000 |
| Journal: |
Database Release |
| Title: |
Entrez Gene Load |
|
|
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|
•
•
•
•
•
|
| Publication |
| First Author: |
Allen Institute for Brain Science |
| Year: |
2004 |
| Journal: |
Allen Institute |
| Title: |
Allen Brain Atlas: mouse riboprobes |
|
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•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2009 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
| Year: |
2010 |
| Journal: |
Database Download |
| Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Group |
| Year: |
2003 |
| Journal: |
Database Procedure |
| Title: |
Automatic Encodes (AutoE) Reference |
|
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|
•
•
•
•
•
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| Publication |
| First Author: |
Bairoch A |
| Year: |
1999 |
| Journal: |
Database Release |
| Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
|
| Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
|
| Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2009 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
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|
•
•
•
•
•
|
| Publication |
| First Author: |
Adams DJ |
| Year: |
2024 |
| Journal: |
Nature |
| Title: |
Genetic determinants of micronucleus formation in vivo. |
| Volume: |
627 |
| Issue: |
8002 |
| Pages: |
130-136 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Skarnes WC |
| Year: |
2011 |
| Journal: |
Nature |
| Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
| Volume: |
474 |
| Issue: |
7351 |
| Pages: |
337-42 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Cyagen Biosciences Inc. |
| Year: |
2022 |
|
| Title: |
Cyagen Biosciences Website. |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
GOA curators |
| Year: |
2016 |
|
| Title: |
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara |
|
|
|
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
This entry include a group of proteins involved in chromatin remodelling, including Vps72 (vacuolar protein sorting-associated protein 72) from budding yeasts. Vps72 is a Htz1-binding component of the SWR1 complex, which is required for the incorporation of the histone variant H2AZ into chromatin []. It is also required for vacuolar protein sorting in budding yeasts [].The Vps72 homologue from animals, YL-1, is a deposition-and-exchange histone chaperone specific for H2AZ1, specifically chaperones H2AZ1 and deposits it into nucleosomes. It is component of the SRCAP and Tip60 complexes, and mediates the ATP-dependent exchange of histone H2AZ1/H2B dimers for nucleosomal H2A/H2B, leading to transcriptional regulation of selected genes by chromatin remodeling [, ]. |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Liang X |
| Year: |
2016 |
| Journal: |
Nat Struct Mol Biol |
| Title: |
Structural basis of H2A.Z recognition by SRCAP chromatin-remodeling subunit YL1. |
| Volume: |
23 |
| Issue: |
4 |
| Pages: |
317-23 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Domain |
| Description: |
This entry include a group of proteins involved in chromatin remodelling, including Vps72 (vacuolar protein sorting-associated protein 72) from budding yeasts. Vps72 is a Htz1-binding component of the SWR1 complex, which is required for the incorporation of the histone variant H2AZ into chromatin []. It is also required for vacuolar protein sorting in budding yeasts [].The Vps72 homologue from animals, YL-1, is a deposition-and-exchangehistone chaperone specific for H2AZ1, specifically chaperones H2AZ1 and deposits it into nucleosomes. It is component of the SRCAP and Tip60 complexes, and mediates the ATP-dependent exchange of histone H2AZ1/H2B dimers for nucleosomal H2A/H2B, leading to transcriptional regulation of selected genes by chromatin remodeling [, ].This is the N-terminal region from Vps72/YL1, which covers the aspartate- and glutamate-rich N-terminal domain and the central DNA-binding domain [, ]. |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
368
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Watanabe S |
| Year: |
2013 |
| Journal: |
Science |
| Title: |
A histone acetylation switch regulates H2A.Z deposition by the SWR-C remodeling enzyme. |
| Volume: |
340 |
| Issue: |
6129 |
| Pages: |
195-9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Kusch T |
| Year: |
2004 |
| Journal: |
Science |
| Title: |
Acetylation by Tip60 is required for selective histone variant exchange at DNA lesions. |
| Volume: |
306 |
| Issue: |
5704 |
| Pages: |
2084-7 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Latrick CM |
| Year: |
2016 |
| Journal: |
Nat Struct Mol Biol |
| Title: |
Molecular basis and specificity of H2A.Z-H2B recognition and deposition by the histone chaperone YL1. |
| Volume: |
23 |
| Issue: |
4 |
| Pages: |
309-16 |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
Mus caroli |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
Mus pahari |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
Mus spretus |
|
•
•
•
•
•
|
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