Type |
Details |
Score |
GXD Expression |
Probe: |
MGI:6197073 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-09-07 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3287428 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6197085 |
Age: |
postnatal adult |
|
|
Specimen Label: |
7B WT (left) |
Detected: |
true |
Specimen Num: |
15 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6197073 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-09-07 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3287428 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6197084 |
Age: |
postnatal adult |
|
|
Specimen Label: |
1C Intestine |
Detected: |
true |
Specimen Num: |
9 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6197073 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-09-07 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3287428 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6197084 |
Age: |
postnatal adult |
|
|
Specimen Label: |
2I Intestine WT |
Detected: |
true |
Specimen Num: |
16 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6197073 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-09-07 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:3287428 |
|
Stage: |
TS28 |
Assay Id: |
MGI:6197084 |
Age: |
postnatal adult |
|
Note: |
Authors report complete loss of expression in in non-neural tissues in knock out mice. |
Specimen Label: |
2I Intestine KO |
Detected: |
false |
Specimen Num: |
21 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4884570 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1609219 |
Pattern: |
Regionally restricted |
Stage: |
TS19 |
Assay Id: |
MGI:4945533 |
Age: |
embryonic day 11.5 |
Image: |
g01064 E11.5 |
Note: |
Expression was region specific and scattered. |
Specimen Label: |
g01064 E11.5 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4884570 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:3266028 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:4945533 |
Age: |
postnatal day 7 |
Image: |
g01064 P7 |
|
Specimen Label: |
g01064 P7 |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4884570 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:3266028 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:4945533 |
Age: |
postnatal day 42 |
Image: |
g01064 Adult |
|
Specimen Label: |
g01064 Adult |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6197073 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-09-07 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3271628 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6197084 |
Age: |
postnatal adult |
|
|
Specimen Label: |
1C Skeletal muscle |
Detected: |
true |
Specimen Num: |
6 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4884570 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1754028 |
Pattern: |
Widespread |
Stage: |
TS28 |
Assay Id: |
MGI:4945533 |
Age: |
postnatal day 7 |
Image: |
g01064 P7 |
|
Specimen Label: |
g01064 P7 |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4884570 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1754028 |
Pattern: |
Widespread |
Stage: |
TS28 |
Assay Id: |
MGI:4945533 |
Age: |
postnatal day 42 |
Image: |
g01064 Adult |
|
Specimen Label: |
g01064 Adult |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4884570 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3280923 |
Pattern: |
Widespread |
Stage: |
TS23 |
Assay Id: |
MGI:4945533 |
Age: |
embryonic day 15.5 |
Image: |
g01064 E15.5 |
|
Specimen Label: |
g01064 E15.5 |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4884570 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:3280928 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:4945533 |
Age: |
postnatal day 7 |
Image: |
g01064 P7 |
Note: |
Expression was region specific and scattered. |
Specimen Label: |
g01064 P7 |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4884570 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3280928 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:4945533 |
Age: |
postnatal day 42 |
Image: |
g01064 Adult |
Note: |
Expression was region specific and scattered. |
Specimen Label: |
g01064 Adult |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6191682 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-07-25 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3516627 |
Pattern: |
Not Specified |
Stage: |
TS27 |
Assay Id: |
MGI:6191693 |
Age: |
postnatal day 0 |
Image: |
5c left |
|
Specimen Label: |
5c left |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4884570 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3266523 |
Pattern: |
Widespread |
Stage: |
TS23 |
Assay Id: |
MGI:4945533 |
Age: |
embryonic day 15.5 |
Image: |
g01064 E15.5 |
|
Specimen Label: |
g01064 E15.5 |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6197073 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-09-07 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1702128 |
Pattern: |
Spotted |
Stage: |
TS28 |
Assay Id: |
MGI:6197085 |
Age: |
postnatal adult |
|
Note: |
Authors report expression in speckles. |
Specimen Label: |
4C Stomach WT |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6197073 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-09-07 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:1702128 |
|
Stage: |
TS28 |
Assay Id: |
MGI:6197085 |
Age: |
postnatal adult |
|
|
Specimen Label: |
4C Stomach KO |
Detected: |
false |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6197073 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-09-07 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1702128 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6197084 |
Age: |
postnatal adult |
|
|
Specimen Label: |
1C Stomach |
Detected: |
true |
Specimen Num: |
8 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6191682 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-07-25 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3579927 |
Pattern: |
Not Specified |
Stage: |
TS27 |
Assay Id: |
MGI:6191693 |
Age: |
postnatal day 0 |
Image: |
5c left |
|
Specimen Label: |
5c left |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3068228 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-10-13 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1619112 |
Pattern: |
Regionally restricted |
Stage: |
TS12 |
Assay Id: |
MGI:5291713 |
Age: |
embryonic day 8.0 |
Image: |
E8.0 |
Note: |
Expression is stronger in the posterior notochord than elsewhere in the embryo. |
Specimen Label: |
E8.0 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4884570 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757723 |
Pattern: |
Widespread |
Stage: |
TS23 |
Assay Id: |
MGI:4945533 |
Age: |
embryonic day 15.5 |
Image: |
g01064 E15.5 |
|
Specimen Label: |
g01064 E15.5 |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4884570 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757728 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:4945533 |
Age: |
postnatal day 7 |
Image: |
g01064 P7 |
Note: |
Expression was region specific and scattered. |
Specimen Label: |
g01064 P7 |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4884570 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757728 |
Pattern: |
Widespread |
Stage: |
TS28 |
Assay Id: |
MGI:4945533 |
Age: |
postnatal day 42 |
Image: |
g01064 Adult |
|
Specimen Label: |
g01064 Adult |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3609715 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-01-16 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1689422 |
Pattern: |
Not Specified |
Stage: |
TS22 |
Assay Id: |
MGI:3610113 |
Age: |
embryonic day 14.5 |
|
|
Specimen Label: |
None |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3609715 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-01-16 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1689424 |
Pattern: |
Not Specified |
Stage: |
TS24 |
Assay Id: |
MGI:3610113 |
Age: |
embryonic day 16.5 |
|
|
Specimen Label: |
None |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6191682 |
Assay Type: |
RNA in situ |
Annotation Date: |
2018-07-25 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3582727 |
Pattern: |
Not Specified |
Stage: |
TS27 |
Assay Id: |
MGI:6191693 |
Age: |
postnatal day 0 |
Image: |
5c left |
Note: |
More highly expressed. |
Specimen Label: |
5c left |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
Publication |
First Author: |
Li Y |
Year: |
2020 |
Journal: |
Nat Commun |
Title: |
Long noncoding RNA SAM promotes myoblast proliferation through stabilizing Sugt1 and facilitating kinetochore assembly. |
Volume: |
11 |
Issue: |
1 |
Pages: |
2725 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tkatchenko TV |
Year: |
2009 |
Journal: |
Physiol Genomics |
Title: |
Lack of periostin leads to suppression of Notch1 signaling and calcific aortic valve disease. |
Volume: |
39 |
Issue: |
3 |
Pages: |
160-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tamplin OJ |
Year: |
2011 |
Journal: |
Dev Biol |
Title: |
Integrated microarray and ChIP analysis identifies multiple Foxa2 dependent target genes in the notochord. |
Volume: |
360 |
Issue: |
2 |
Pages: |
415-25 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yang J |
Year: |
2022 |
Journal: |
Front Genet |
Title: |
Identifying key m(6)A-methylated lncRNAs and genes associated with neural tube defects via integrative MeRIP and RNA sequencing analyses. |
Volume: |
13 |
|
Pages: |
974357 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yue Y |
Year: |
2023 |
Journal: |
Exp Cell Res |
Title: |
Lnc-Malat1 promotes slow myofiber-type transformation through sponging miR-129-5p in C2C12 myotubes. |
Volume: |
431 |
Issue: |
1 |
Pages: |
113761 |
|
•
•
•
•
•
|
Publication |
First Author: |
Li L |
Year: |
2019 |
Journal: |
iScience |
Title: |
Histone Deacetylase 3 Governs Perinatal Cerebral Development via Neural Stem and Progenitor Cells. |
Volume: |
20 |
|
Pages: |
148-167 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2001 |
|
Title: |
Gene Ontology Annotation by the MGI Curatorial Staff |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Jensen P |
Year: |
2004 |
Journal: |
Brain Res Mol Brain Res |
Title: |
A neurogenomics approach to gene expression analysis in the developing brain. |
Volume: |
132 |
Issue: |
2 |
Pages: |
116-27 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hutchinson JN |
Year: |
2007 |
Journal: |
BMC Genomics |
Title: |
A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains. |
Volume: |
8 |
|
Pages: |
39 |
|
•
•
•
•
•
|
Publication |
First Author: |
Nakagawa S |
Year: |
2011 |
Journal: |
J Cell Biol |
Title: |
Paraspeckles are subpopulation-specific nuclear bodies that are not essential in mice. |
Volume: |
193 |
Issue: |
1 |
Pages: |
31-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
International Mouse Strain Resource |
Year: |
2014 |
Journal: |
Database Download |
Title: |
MGI download of germline transmission data for alleles from IMSR strain data |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Zhao J |
Year: |
2010 |
Journal: |
Mol Cell |
Title: |
Genome-wide identification of polycomb-associated RNAs by RIP-seq. |
Volume: |
40 |
Issue: |
6 |
Pages: |
939-53 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ushakov K |
Year: |
2017 |
Journal: |
Sci Rep |
Title: |
Genome-wide identification and expression profiling of long non-coding RNAs in auditory and vestibular systems. |
Volume: |
7 |
Issue: |
1 |
Pages: |
8637 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ishizuka A |
Year: |
2014 |
Journal: |
Genes Cells |
Title: |
Formation of nuclear bodies by the lncRNA Gomafu-associating proteins Celf3 and SF1. |
Volume: |
19 |
Issue: |
9 |
Pages: |
704-21 |
|
•
•
•
•
•
|
Publication |
First Author: |
Magdaleno S |
Year: |
2006 |
Journal: |
PLoS Biol |
Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
Volume: |
4 |
Issue: |
4 |
Pages: |
e86 |
|
•
•
•
•
•
|
Publication |
First Author: |
Friedel RH |
Year: |
2007 |
Journal: |
Brief Funct Genomic Proteomic |
Title: |
EUCOMM--the European conditional mouse mutagenesis program. |
Volume: |
6 |
Issue: |
3 |
Pages: |
180-5 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shanghai Model Organisms Center |
Year: |
2017 |
Journal: |
MGI Direct Data Submission |
Title: |
Information obtained from the Shanghai Model Organisms Center (SMOC), Shanghai, China |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Hansen J |
Year: |
2003 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. |
Volume: |
100 |
Issue: |
17 |
Pages: |
9918-22 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lennon G |
Year: |
1999 |
Journal: |
Database Download |
Title: |
WashU-HHMI Mouse EST Project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
|
Title: |
GemPharmatech Website. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Hansen GM |
Year: |
2008 |
Journal: |
Genome Res |
Title: |
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. |
Volume: |
18 |
Issue: |
10 |
Pages: |
1670-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Cyagen Biosciences Inc. |
Year: |
2022 |
|
Title: |
Cyagen Biosciences Website. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
Year: |
2004 |
Journal: |
Database Release |
Title: |
Mouse T31 Radiation Hybrid Data Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
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Publication |
First Author: |
Kawai J |
Year: |
2001 |
Journal: |
Nature |
Title: |
Functional annotation of a full-length mouse cDNA collection. |
Volume: |
409 |
Issue: |
6821 |
Pages: |
685-90 |
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI) |
Year: |
2008 |
Journal: |
Database Download |
Title: |
Mouse Gene Trap Data Load from dbGSS |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
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Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2003 |
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Title: |
MGI Sequence Curation Reference |
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Publication |
First Author: |
Okazaki Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
563-73 |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
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Publication |
First Author: |
MGD Nomenclature Committee |
Year: |
1995 |
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Title: |
Nomenclature Committee Use |
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Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
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Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
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Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
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HT Experiment |
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Experiment Type: |
RNA-Seq |
Study Type: |
WT vs. Mutant |
Source: |
GEO |
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Allele |
Name: |
metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA); targeted mutation 1.2, David L Spector |
Allele Type: |
Targeted |
Attribute String: |
Null/knockout |
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HT Experiment |
Series Id: |
GSE37706 |
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
ArrayExpress |
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Publication |
First Author: |
Zhao G |
Year: |
2016 |
Journal: |
FEBS Lett |
Title: |
The long noncoding RNA MALAT1 regulates the lipopolysaccharide-induced inflammatory response through its interaction with NF-κB. |
Volume: |
590 |
Issue: |
17 |
Pages: |
2884-95 |
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Publication |
First Author: |
Voce DJ |
Year: |
2019 |
Journal: |
Cancer Res |
Title: |
Temozolomide Treatment Induces lncRNA MALAT1 in an NF-κB and p53 Codependent Manner in Glioblastoma. |
Volume: |
79 |
Issue: |
10 |
Pages: |
2536-2548 |
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Publication |
First Author: |
Li X |
Year: |
2017 |
Journal: |
Exp Cell Res |
Title: |
Long noncoding RNA MALAT1 regulates renal tubular epithelial pyroptosis by modulated miR-23c targeting of ELAVL1 in diabetic nephropathy. |
Volume: |
350 |
Issue: |
2 |
Pages: |
327-335 |
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Allele |
Name: |
metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA); endonuclease-mediated mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Null/knockout |
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Publication |
First Author: |
Brown JA |
Year: |
2016 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Methyltransferase-like protein 16 binds the 3'-terminal triple helix of MALAT1 long noncoding RNA. |
Volume: |
113 |
Issue: |
49 |
Pages: |
14013-14018 |
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Strain |
Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
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Allele |
Name: |
metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA); targeted mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Targeted |
Attribute String: |
Conditional ready, No functional change |
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DO Term |
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Strain |
Attribute String: |
coisogenic, mutant strain, targeted mutation |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
33
 |
Fragment?: |
true |
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Publication |
First Author: |
Sergiev PV |
Year: |
2008 |
Journal: |
J Mol Biol |
Title: |
The ybiN gene of Escherichia coli encodes adenine-N6 methyltransferase specific for modification of A1618 of 23 S ribosomal RNA, a methylated residue located close to the ribosomal exit tunnel. |
Volume: |
375 |
Issue: |
1 |
Pages: |
291-300 |
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Protein Domain |
Type: |
Family |
Description: |
This family includes ribosomal RNA large subunit methyltransferase F (RlmF), and related proteins, including methyltransferase-like protein 16 (METTL16). METTL16 is a conserved RNA methyltransferase which interacts specifically with the MALAT1 triple helix. METTL16 shows nuclear localisation []. Another functional study indicates that METTL16 regulates expression of human MAT2A, which encodes the SAM synthetase expressed in most cells. Furthermore, results indicate that METTL16 is the long-unknown methyltransferase for the U6 spliceosomal small nuclear RNA (snRNA) and it has evolved an additional function in vertebrates to control SAM homeostasis by post-transcriptionally regulating SAM synthetase gene expression [].RlmF methylates the adenine in position 1618 of 23S rRNA []. This family also includes psilocybin synthase (PsiM), which is a methyltransferase involved in the biosynthesis of the psychotropic agent psilocybin from the mushroom Psilocybe cubensis []. |
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Publication |
First Author: |
Pendleton KE |
Year: |
2017 |
Journal: |
Cell |
Title: |
The U6 snRNA m6A Methyltransferase METTL16 Regulates SAM Synthetase Intron Retention. |
Volume: |
169 |
Issue: |
5 |
Pages: |
824-835.e14 |
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Publication |
First Author: |
You ZP |
Year: |
2018 |
Journal: |
Invest Ophthalmol Vis Sci |
Title: |
Bioinformatics Analysis of Weighted Genes in Diabetic Retinopathy. |
Volume: |
59 |
Issue: |
13 |
Pages: |
5558-5563 |
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Publication |
First Author: |
Xu W |
Year: |
2013 |
Journal: |
Int J Mol Sci |
Title: |
Differential expression of genes associated with the progression of renal disease in the kidneys of liver-specific glucokinase gene knockout mice. |
Volume: |
14 |
Issue: |
3 |
Pages: |
6467-86 |
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Publication |
First Author: |
Deschepper CF |
Year: |
2020 |
Journal: |
Sci Rep |
Title: |
Regulatory effects of the Uty/Ddx3y locus on neighboring chromosome Y genes and autosomal mRNA transcripts in adult mouse non-reproductive cells. |
Volume: |
10 |
Issue: |
1 |
Pages: |
14900 |
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Publication |
First Author: |
Pirie E |
Year: |
2018 |
Journal: |
PLoS Genet |
Title: |
Mouse genome-wide association studies and systems genetics uncover the genetic architecture associated with hepatic pharmacokinetic and pharmacodynamic properties of a constrained ethyl antisense oligonucleotide targeting Malat1. |
Volume: |
14 |
Issue: |
10 |
Pages: |
e1007732 |
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Publication |
First Author: |
Kandasamy P |
Year: |
2022 |
Journal: |
Nucleic Acids Res |
Title: |
Impact of guanidine-containing backbone linkages on stereopure antisense oligonucleotides in the CNS. |
Volume: |
50 |
Issue: |
10 |
Pages: |
5401-5423 |
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Publication |
First Author: |
Fei J |
Year: |
2017 |
Journal: |
J Cell Sci |
Title: |
Quantitative analysis of multilayer organization of proteins and RNA in nuclear speckles at super resolution. |
Volume: |
130 |
Issue: |
24 |
Pages: |
4180-4192 |
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Publication |
First Author: |
Yan W |
Year: |
2017 |
Journal: |
Sci Rep |
Title: |
MiR-503 modulates epithelial-mesenchymal transition in silica-induced pulmonary fibrosis by targeting PI3K p85 and is sponged by lncRNA MALAT1. |
Volume: |
7 |
Issue: |
1 |
Pages: |
11313 |
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Publication |
First Author: |
Fricke J |
Year: |
2017 |
Journal: |
Angew Chem Int Ed Engl |
Title: |
Enzymatic Synthesis of Psilocybin. |
Volume: |
56 |
Issue: |
40 |
Pages: |
12352-12355 |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
553
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Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
215
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Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
593
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Fragment?: |
false |
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