Type |
Details |
Score |
GXD Expression |
Probe: |
MGI:5648881 |
Assay Type: |
RNA in situ |
Annotation Date: |
2015-08-18 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1606611 |
Pattern: |
Not Specified |
Stage: |
TS11 |
Assay Id: |
MGI:5648954 |
Age: |
embryonic day 7.5 |
Image: |
2F |
|
Specimen Label: |
2F |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5648881 |
Assay Type: |
RNA in situ |
Annotation Date: |
2015-08-18 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1604220 |
Pattern: |
Regionally restricted |
Stage: |
TS20 |
Assay Id: |
MGI:5648954 |
Age: |
embryonic day 12.5 |
Image: |
2H |
Note: |
Expression is present in the allantois. |
Specimen Label: |
2H |
Detected: |
true |
Specimen Num: |
6 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5648881 |
Assay Type: |
RNA in situ |
Annotation Date: |
2015-08-19 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3525928 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:5649064 |
Age: |
postnatal adult |
Image: |
3A |
Note: |
Expression is more intense in this layer. |
Specimen Label: |
3A |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5648913 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2015-08-19 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3525928 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:5649071 |
Age: |
postnatal week 6 |
Image: |
Cx WT |
|
Specimen Label: |
Cx WT |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5648913 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2015-08-19 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:3525928 |
|
Stage: |
TS28 |
Assay Id: |
MGI:5649071 |
Age: |
postnatal week 6 |
Image: |
Cx KO |
|
Specimen Label: |
Cx KO |
Detected: |
false |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5648881 |
Assay Type: |
RNA in situ |
Annotation Date: |
2015-08-18 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:3187713 |
Pattern: |
Not Specified |
Stage: |
TS13 |
Assay Id: |
MGI:5648954 |
Age: |
embryonic day 8.5 |
Image: |
2G |
|
Specimen Label: |
2G |
Detected: |
true |
Specimen Num: |
5 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5648881 |
Assay Type: |
RNA in situ |
Annotation Date: |
2015-08-18 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1611211 |
Pattern: |
Not Specified |
Stage: |
TS11 |
Assay Id: |
MGI:5648954 |
Age: |
embryonic day 7.5 |
Image: |
2F |
|
Specimen Label: |
2F |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5648881 |
Assay Type: |
RNA in situ |
Annotation Date: |
2015-08-18 |
Strength: |
Weak |
Sex: |
Not Specified |
Emaps: |
EMAPS:1797228 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:5648954 |
Age: |
postnatal adult |
Image: |
2I |
|
Specimen Label: |
2I |
Detected: |
true |
Specimen Num: |
7 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5648881 |
Assay Type: |
RNA in situ |
Annotation Date: |
2015-08-18 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1610711 |
Pattern: |
Not Specified |
Stage: |
TS11 |
Assay Id: |
MGI:5648954 |
Age: |
embryonic day 7.5 |
Image: |
2D |
|
Specimen Label: |
2D |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5648881 |
Assay Type: |
RNA in situ |
Annotation Date: |
2015-08-18 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1610713 |
Pattern: |
Not Specified |
Stage: |
TS13 |
Assay Id: |
MGI:5648954 |
Age: |
embryonic day 8.5 |
Image: |
2E |
|
Specimen Label: |
2E |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5648881 |
Assay Type: |
RNA in situ |
Annotation Date: |
2015-08-18 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1610711 |
Pattern: |
Not Specified |
Stage: |
TS11 |
Assay Id: |
MGI:5648954 |
Age: |
embryonic day 7.5 |
Image: |
2F |
|
Specimen Label: |
2F |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3615800 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-03-28 |
Strength: |
Ambiguous |
Sex: |
Not Specified |
Emaps: |
EMAPS:1679727 |
Pattern: |
Not Specified |
Stage: |
TS27 |
Assay Id: |
MGI:3618067 |
Age: |
postnatal day 0 |
Image: |
P0 |
Note: |
Authors indicate that there was either ubiquitous or background expression. |
Specimen Label: |
P0 |
|
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3615800 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-03-28 |
Strength: |
Ambiguous |
Sex: |
Not Specified |
Emaps: |
EMAPS:1754027 |
Pattern: |
Not Specified |
Stage: |
TS27 |
Assay Id: |
MGI:3618067 |
Age: |
postnatal day 0 |
Image: |
P0 |
Note: |
Authors indicate that there was either ubiquitous or background expression. |
Specimen Label: |
P0 |
|
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3615800 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-03-28 |
Strength: |
Ambiguous |
Sex: |
Not Specified |
Emaps: |
EMAPS:3280927 |
Pattern: |
Not Specified |
Stage: |
TS27 |
Assay Id: |
MGI:3618067 |
Age: |
postnatal day 0 |
Image: |
P0 |
Note: |
Authors indicate that there was either ubiquitous or background expression. |
Specimen Label: |
P0 |
|
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3615800 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-03-28 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3267921 |
Pattern: |
Not Specified |
Stage: |
TS21 |
Assay Id: |
MGI:3618067 |
Age: |
embryonic day 13.5 |
Image: |
E13.5 |
|
Specimen Label: |
E13.5 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3615800 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-03-28 |
Strength: |
Ambiguous |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757721 |
Pattern: |
Not Specified |
Stage: |
TS21 |
Assay Id: |
MGI:3618067 |
Age: |
embryonic day 13.5 |
Image: |
E13.5 |
Note: |
Authors indicate that there was either ubiquitous or background expression. |
Specimen Label: |
E13.5 |
|
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3615800 |
Assay Type: |
RNA in situ |
Annotation Date: |
2006-03-28 |
Strength: |
Ambiguous |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757727 |
Pattern: |
Not Specified |
Stage: |
TS27 |
Assay Id: |
MGI:3618067 |
Age: |
postnatal day 0 |
Image: |
P0 |
Note: |
Authors indicate that there was either ubiquitous or background expression. |
Specimen Label: |
P0 |
|
Specimen Num: |
2 |
|
•
•
•
•
•
|
Publication |
First Author: |
Fribourg S |
Year: |
2001 |
Journal: |
Mol Cell |
Title: |
Structural basis for the recognition of a nucleoporin FG repeat by the NTF2-like domain of the TAP/p15 mRNA nuclear export factor. |
Volume: |
8 |
Issue: |
3 |
Pages: |
645-56 |
|
•
•
•
•
•
|
Publication |
First Author: |
Grüter P |
Year: |
1998 |
Journal: |
Mol Cell |
Title: |
TAP, the human homolog of Mex67p, mediates CTE-dependent RNA export from the nucleus. |
Volume: |
1 |
Issue: |
5 |
Pages: |
649-59 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bachi A |
Year: |
2000 |
Journal: |
RNA |
Title: |
The C-terminal domain of TAP interacts with the nuclear pore complex and promotes export of specific CTE-bearing RNA substrates. |
Volume: |
6 |
Issue: |
1 |
Pages: |
136-58 |
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
GSE29541 |
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
127
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Yang J |
Year: |
2001 |
Journal: |
Mol Cell |
Title: |
Two closely related human nuclear export factors utilize entirely distinct export pathways. |
Volume: |
8 |
Issue: |
2 |
Pages: |
397-406 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhou J |
Year: |
2014 |
Journal: |
Hum Mol Genet |
Title: |
Respiratory failure, cleft palate and epilepsy in the mouse model of human Xq22.1 deletion syndrome. |
Volume: |
23 |
Issue: |
14 |
Pages: |
3823-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Agrimson KS |
Year: |
2022 |
Journal: |
PLoS Genet |
Title: |
Lrh1 can help reprogram sexual cell fate and is required for Sertoli cell development and spermatogenesis in the mouse testis. |
Volume: |
18 |
Issue: |
2 |
Pages: |
e1010088 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
89
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Black BE |
Year: |
1999 |
Journal: |
Mol Cell Biol |
Title: |
Identification of an NTF2-related factor that binds Ran-GTP and regulates nuclear protein export. |
Volume: |
19 |
Issue: |
12 |
Pages: |
8616-24 |
|
•
•
•
•
•
|
Publication |
First Author: |
Grant RP |
Year: |
2002 |
Journal: |
Nat Struct Biol |
Title: |
Structure of the C-terminal FG-nucleoporin binding domain of Tap/NXF1. |
Volume: |
9 |
Issue: |
4 |
Pages: |
247-51 |
|
•
•
•
•
•
|
Publication |
First Author: |
Liker E |
Year: |
2000 |
Journal: |
EMBO J |
Title: |
The structure of the mRNA export factor TAP reveals a cis arrangement of a non-canonical RNP domain and an LRR domain. |
Volume: |
19 |
Issue: |
21 |
Pages: |
5587-98 |
|
•
•
•
•
•
|
Publication |
First Author: |
Suyama M |
Year: |
2000 |
Journal: |
EMBO Rep |
Title: |
Prediction of structural domains of TAP reveals details of its interaction with p15 and nucleoporins. |
Volume: |
1 |
Issue: |
1 |
Pages: |
53-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hobeika M |
Year: |
2009 |
Journal: |
J Biol Chem |
Title: |
Structural requirements for the ubiquitin-associated domain of the mRNA export factor Mex67 to bind its specific targets, the transcription elongation THO complex component Hpr1 and nucleoporin FXFG repeats. |
Volume: |
284 |
Issue: |
26 |
Pages: |
17575-83 |
|
•
•
•
•
•
|
Publication |
First Author: |
Braun IC |
Year: |
2001 |
Journal: |
J Biol Chem |
Title: |
Overexpression of TAP/p15 heterodimers bypasses nuclear retention and stimulates nuclear mRNA export. |
Volume: |
276 |
Issue: |
23 |
Pages: |
20536-43 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yoon DW |
Year: |
1997 |
Journal: |
Immunity |
Title: |
Tap: a novel cellular protein that interacts with tip of herpesvirus saimiri and induces lymphocyte aggregation. |
Volume: |
6 |
Issue: |
5 |
Pages: |
571-82 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bear J |
Year: |
1999 |
Journal: |
Mol Cell Biol |
Title: |
Identification of novel import and export signals of human TAP, the protein that binds to the constitutive transport element of the type D retrovirus mRNAs. |
Volume: |
19 |
Issue: |
9 |
Pages: |
6306-17 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kang Y |
Year: |
1999 |
Journal: |
Genes Dev |
Title: |
The human Tap protein is a nuclear mRNA export factor that contains novel RNA-binding and nucleocytoplasmic transport sequences. |
Volume: |
13 |
Issue: |
9 |
Pages: |
1126-39 |
|
•
•
•
•
•
|
Publication |
First Author: |
Braun IC |
Year: |
1999 |
Journal: |
EMBO J |
Title: |
TAP binds to the constitutive transport element (CTE) through a novel RNA-binding motif that is sufficient to promote CTE-dependent RNA export from the nucleus. |
Volume: |
18 |
Issue: |
7 |
Pages: |
1953-65 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for nuclear export of mRNA. Tap has a modular structure, and its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling []. The structure of the C-terminal domain is composed of four helices []. The structure is related to the UBA domain.The NXF family of mRNA nuclear export factors includes vertebrate NXF1 (also called tip-associated protein or mRNA export factor TAP), NXF2 (also called cancer/testis antigen CT39 or TAP-like protein TAPL-2), Caenorhabditis elegans NXF1 (ceNXF1), Saccharomyces cerevisiae mRNA nuclear export factor Mex67p and similar proteins. NXF proteins can stimulate nuclear export of mRNAs and facilitate the export of unspliced viral mRNA containing the constitutive transport element. An NXF protein is multi-domain with a nuclear localization sequence (NLS), a non-canonical mRNA-binding domain, and four leucine-rich repeats (LLR) at the N-terminal region. Its C-terminal part contains a NTF2-like domain and a ubiquitin-associated (UBA)-like domain, joined by flexible Pro-rich linker. Caenorhabditis elegans NXF1 are essential for the nuclear export of poly(A)+mRNA. In budding yeast, Mex67p binds mRNAs through its adaptor Yra1/REF. It also interacts directly with Nab2, an essential shuttling mRNA-binding protein required for export. Moreover, Mex67p associates with both nuclear pore protein (nucleoporin) FG repeats and Hpr1, a component of the TREX/THO complex linking transcription and export [, , , , , , , , , , , , , , , ]. |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
155
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
103
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
187
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Herold A |
Year: |
2000 |
Journal: |
Mol Cell Biol |
Title: |
TAP (NXF1) belongs to a multigene family of putative RNA export factors with a conserved modular architecture. |
Volume: |
20 |
Issue: |
23 |
Pages: |
8996-9008 |
|
•
•
•
•
•
|
Publication |
First Author: |
Grant RP |
Year: |
2003 |
Journal: |
J Mol Biol |
Title: |
Structural basis for the interaction between the Tap/NXF1 UBA domain and FG nucleoporins at 1A resolution. |
Volume: |
326 |
Issue: |
3 |
Pages: |
849-58 |
|
•
•
•
•
•
|
Publication |
First Author: |
Iglesias N |
Year: |
2010 |
Journal: |
Genes Dev |
Title: |
Ubiquitin-mediated mRNP dynamics and surveillance prior to budding yeast mRNA export. |
Volume: |
24 |
Issue: |
17 |
Pages: |
1927-38 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
282
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
418
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
618
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
553
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
473
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
618
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
475
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
685
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
671
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
509
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
620
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Gerhard DS |
Year: |
2004 |
Journal: |
Genome Res |
Title: |
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |
Volume: |
14 |
Issue: |
10B |
Pages: |
2121-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Church DM |
Year: |
2009 |
Journal: |
PLoS Biol |
Title: |
Lineage-specific biology revealed by a finished genome assembly of the mouse. |
Volume: |
7 |
Issue: |
5 |
Pages: |
e1000112 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Chromosome assignment of mouse genes using the Mouse Genome Sequencing Consortium (MGSC) assembly and the ENSEMBL Database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
|
Title: |
GemPharmatech Website. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Diez-Roux G |
Year: |
2011 |
Journal: |
PLoS Biol |
Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Volume: |
9 |
Issue: |
1 |
Pages: |
e1000582 |
|
•
•
•
•
•
|