| Type |
Details |
Score |
| GXD Expression |
| Probe: |
MGI:3841615 |
| Assay Type: |
Immunohistochemistry |
| Annotation Date: |
2009-04-28 |
| Strength: |
Strong |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1717120 |
| Pattern: |
Regionally restricted |
| Stage: |
TS20 |
| Assay Id: |
MGI:3841616 |
| Age: |
embryonic day 12.5 |
| Image: |
1G,I |
| Note: |
Intense expression was detected at the vitreal surface of the neural retina. |
| Specimen Label: |
1G,I |
| Detected: |
true |
| Specimen Num: |
4 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Andreu N |
| Year: |
2001 |
| Journal: |
Gene |
| Title: |
PALML, a novel paralemmin-related gene mapping on human chromosome 1p21. |
| Volume: |
278 |
| Issue: |
1-2 |
| Pages: |
33-40 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Basile M |
| Year: |
2006 |
| Journal: |
Arch Biochem Biophys |
| Title: |
Paralemmin interacts with D3 dopamine receptors: implications for membrane localization and cAMP signaling. |
| Volume: |
446 |
| Issue: |
1 |
| Pages: |
60-8 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Maeda A |
| Year: |
2010 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Palmitoylation stabilizes unliganded rod opsin. |
| Volume: |
107 |
| Issue: |
18 |
| Pages: |
8428-33 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Zhou P |
| Year: |
2013 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Interrogating translational efficiency and lineage-specific transcriptomes using ribosome affinity purification. |
| Volume: |
110 |
| Issue: |
38 |
| Pages: |
15395-400 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Munton RP |
| Year: |
2007 |
| Journal: |
Mol Cell Proteomics |
| Title: |
Qualitative and quantitative analyses of protein phosphorylation in naive and stimulated mouse synaptosomal preparations. |
| Volume: |
6 |
| Issue: |
2 |
| Pages: |
283-93 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Okazaki N |
| Year: |
2003 |
| Journal: |
DNA Res |
| Title: |
Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. |
| Volume: |
10 |
| Issue: |
4 |
| Pages: |
167-80 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
MGI and IMPC |
| Year: |
2017 |
| Journal: |
MGI Direct Data Submission |
| Title: |
MGI Curation of Endonuclease-Mediated Alleles (CRISPR) from the International Mouse Phenotyping Consortium (IMPC) |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Bedogni F |
| Year: |
2021 |
| Journal: |
Front Mol Neurosci |
| Title: |
Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. |
| Volume: |
14 |
|
| Pages: |
686034 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Velocigene |
| Year: |
2008 |
| Journal: |
MGI Direct Data Submission |
| Title: |
Alleles produced for the KOMP project by Velocigene (Regeneron Pharmaceuticals) |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Shanghai Model Organisms Center |
| Year: |
2017 |
| Journal: |
MGI Direct Data Submission |
| Title: |
Information obtained from the Shanghai Model Organisms Center (SMOC), Shanghai, China |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC) |
| Year: |
2014 |
| Journal: |
Database Release |
| Title: |
Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Helmholtz Zentrum Muenchen GmbH |
| Year: |
2010 |
| Journal: |
MGI Direct Data Submission |
| Title: |
Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu) |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
The Gene Ontology Consortium |
| Year: |
2014 |
|
| Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-rat orthologs |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
UniProt-GOA |
| Year: |
2012 |
|
| Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Carninci P |
| Year: |
2005 |
| Journal: |
Science |
| Title: |
The transcriptional landscape of the mammalian genome. |
| Volume: |
309 |
| Issue: |
5740 |
| Pages: |
1559-63 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Kawai J |
| Year: |
2001 |
| Journal: |
Nature |
| Title: |
Functional annotation of a full-length mouse cDNA collection. |
| Volume: |
409 |
| Issue: |
6821 |
| Pages: |
685-90 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Adams DJ |
| Year: |
2024 |
| Journal: |
Nature |
| Title: |
Genetic determinants of micronucleus formation in vivo. |
| Volume: |
627 |
| Issue: |
8002 |
| Pages: |
130-136 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Zambrowicz BP |
| Year: |
2003 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. |
| Volume: |
100 |
| Issue: |
24 |
| Pages: |
14109-14 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI) |
| Year: |
2008 |
| Journal: |
Database Download |
| Title: |
Mouse Gene Trap Data Load from dbGSS |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Cyagen Biosciences Inc. |
| Year: |
2022 |
|
| Title: |
Cyagen Biosciences Website. |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
GOA curators |
| Year: |
2016 |
|
| Title: |
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
| Year: |
2004 |
| Journal: |
Database Release |
| Title: |
Mouse T31 Radiation Hybrid Data Load |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Okazaki Y |
| Year: |
2002 |
| Journal: |
Nature |
| Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
| Volume: |
420 |
| Issue: |
6915 |
| Pages: |
563-73 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
The Gene Ontology Consortium |
| Year: |
2010 |
|
| Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Diez-Roux G |
| Year: |
2011 |
| Journal: |
PLoS Biol |
| Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
| Volume: |
9 |
| Issue: |
1 |
| Pages: |
e1000582 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2002 |
|
| Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2010 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
MGI Genome Annotation Group and UniGene Staff |
| Year: |
2015 |
| Journal: |
Database Download |
| Title: |
MGI-UniGene Interconnection Effort |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
| Year: |
2010 |
|
| Title: |
Annotation inferences using phylogenetic trees |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
| Year: |
2000 |
| Journal: |
Database Release |
| Title: |
Entrez Gene Load |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Allen Institute for Brain Science |
| Year: |
2004 |
| Journal: |
Allen Institute |
| Title: |
Allen Brain Atlas: mouse riboprobes |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2009 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
| Year: |
2010 |
| Journal: |
Database Download |
| Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Group |
| Year: |
2003 |
| Journal: |
Database Procedure |
| Title: |
Automatic Encodes (AutoE) Reference |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Bairoch A |
| Year: |
1999 |
| Journal: |
Database Release |
| Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
|
| Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics |
| Year: |
2010 |
| Journal: |
Database Release |
| Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
|
| Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2009 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
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|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Black TM |
| Year: |
2000 |
| Journal: |
J Nutr |
| Title: |
Palm tocotrienols protect ApoE +/- mice from diet-induced atheroma formation. |
| Volume: |
130 |
| Issue: |
10 |
| Pages: |
2420-6 |
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| Protein Domain |
| Type: |
Domain |
| Description: |
The catalytic region of DNA polymerase beta is split into three domains. An N-terminal fingers domain, a central palm domain and a C-terminal thumb domain. This entry represents the palm domain []. |
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
263
 |
| Fragment?: |
false |
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•
•
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| Protein Domain |
| Type: |
Homologous_superfamily |
| Description: |
The achromobactin synthetase protein D (AcsD) monomer can be decomposed into three domains that resemble a cupped hand (thumb domain 1, palm domain 2 and fingers domain 3). The Domain 1 (thumb) is a three helix bundle flanked by a four stranded anti-parallel β-sheet that forms the dimer interface. Domain 2 bridges domain 1 to domain 3 and comprises a four-helix bundle sandwiched between a three-stranded antiparallel β-sheet and a two-stranded antiparallel β-sheet. Domain 3 is connected to domain 1 by a 31-residue extended loop (L4), it comprises 182 residues folded in a twisted eight-stranded antiparallel β-sheet interspersed with five α-helices and extended loops [].This superfamily represents the helix bundle of the vibrioferrin amide bond forming protein PvsD and achromobactin synthetase protein D (AcsD) palm domain. The secondary structure elements of the palm domain are interspersed with long loops, two of which, L9 and L10, point upwards from the palm and contain three absolutely conserved residues H444, N447 and D464 as well as N509 which is found only in type A and B enzymes []. |
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•
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| Protein Domain |
| Type: |
Homologous_superfamily |
| Description: |
DNA is the biological information that instructs cells how to exist in an ordered fashion: accurate replication is thus one of the most important events in the life cycle of a cell. This function is performed by DNA- directed DNA-polymerases ) by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA, using a complementary DNA chain as a template. Small RNA molecules are generally used as primers for chain elongation, although terminal proteins may also be used for the de novo synthesis of a DNA chain. Even though there are 2 different methods of priming, these are mediated by 2 very similar polymerases classes, A and B, with similar methods of chain elongation. A number of DNA polymerases have been grouped under the designation of DNA polymerase family B. Six regions of similarity (numbered from I to VI) are found in all or a subset of the B family polymerases. The most conserved region (I) includes a conserved tetrapeptide with two aspartate residues. Its function is not yet known, however, it has been suggested that it may be involved in binding a magnesium ion. All sequences in the B family contain a characteristic DTDS motif, and possess many functional domains, including a 5'-3' elongation domain, a 3'-5' exonuclease domain [], a DNA binding domain, and binding domains for both dNTP's and pyrophosphate []. The DNA polymerase structure resembles a right hand with fingers, palm, and thumb, with an active site formed by a palm holding the catalytic residues, a thumb that binds the primer:template DNA and fingers interacting with incoming nucleotide, and the N and Exo domains extend from the finger toward the thumb [, , ]. This superfamily represents the palm domain of DNA polymerase B composed of 6-stranded β-sheet flanked by two long α-helices from one side and a short helix from the other. |
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•
•
•
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| Protein Domain |
| Type: |
Domain |
| Description: |
RNA-directed RNA polymerase (RdRp) () is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage [, ]. It catalyses synthesis of the RNA strand complementary to a given RNA template, but the precise molecular mechanism remains unclear.The postulated RNA replication process is a two-step mechanism. First, the initiation step of RNA synthesis begins at or near the 3' end of the RNA template by means of a primer-independent (de novo) mechanism. The de novo initiation consists in the addition of a nucleotide tri-phosphate (NTP) to the 3'-OH of the first initiating NTP. During the following so-called elongation phase, this nucleotidyl transfer reaction is repeated with subsequent NTPs to generate the complementary RNA product []. All the RNA-directed RNA polymerases, and many DNA-directed polymerases, employ a fold whose organisation has been likened to the shape of a right hand with three subdomains termed fingers, palm and thumb []. Only the catalytic palm subdomain, composed of a four-stranded antiparallel β-sheet with two α-helices, is well conserved among all of these enzymes. In RdRp, the palm subdomain comprises three well conserved motifs (A, B and C). Motif A (D-x(4,5)-D) and motif C (GDD) are spatially juxtaposed; the Asp residues of these motifs are implied in the binding of Mg2+ and/or Mn2+. The Asn residue of motif B is involved in selection of ribonucleoside triphosphates over dNTPs and thus determines whether RNA is synthesised rather than DNA [].The domain organisation []and the 3D structure of the catalytic centre of a wide range of RdPp's, even those with a low overall sequence homology, are conserved. The catalytic centre is formed by several motifs containing a number of conserved amino acid residues.There are 4 superfamilies of viruses that cover all RNA containing viruses with no DNA stage:Viruses containing positive-strand RNA or double-strand RNA, except retroviruses and Birnaviridae: viral RNA-directed RNA polymerases including all positive-strand RNA viruses with no DNA stage, double-strand RNA viruses, and the Cystoviridae, Reoviridae, Hypoviridae, Partitiviridae, Totiviridae families.Mononegavirales (negative-strand RNA viruses with non-segmented genomes).Negative-strand RNA viruses with segmented genomes, i.e. Orthomyxoviruses (including influenza A, B, and C viruses, Thogotoviruses, and the infectious salmon anemia virus), Arenaviruses, Bunyaviruses, Hantaviruses, Nairoviruses, Phleboviruses, Tenuiviruses and Tospoviruses.Birnaviridae family of dsRNA viruses.The RNA-directed RNA polymerases in the first of the above superfamilies can be divided into the following three subgroups:All positive-strand RNA eukaryotic viruses with no DNA stage.All RNA-containing bacteriophages -there are two families of RNA-containing bacteriophages: Leviviridae (positive ssRNA phages) and Cystoviridae (dsRNA phages).Reoviridae family of dsRNA viruses.This entry represents the "palm"domain of RdRp from Birnavirus. These proteins lack the highly conserved Gly-Asp-Asp (GDD) sequence, a component of the proposed catalytic site of this enzyme family that exists in the conserved motif VI of the palm domain of other RNA-directed RNA polymerases [, ]. The catalytic motifs are arranged in a permuted order, thus, adopting a unique active site topology []. |
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•
•
•
•
•
|
| Protein Domain |
| Type: |
Homologous_superfamily |
| Description: |
RNA-directed RNA polymerase (RdRp) () is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage [, ]. It catalyses synthesis of the RNA strand complementary to a given RNA template, but the precise molecular mechanism remains unclear.The postulated RNA replication process is a two-step mechanism. First, the initiation step of RNA synthesis begins at or near the 3' end of the RNA template by means of a primer-independent (de novo) mechanism. The de novo initiation consists in the addition of a nucleotide tri-phosphate (NTP) to the 3'-OH of the first initiating NTP. During the following so-called elongation phase, this nucleotidyl transfer reaction is repeated with subsequent NTPs to generate the complementary RNA product []. All the RNA-directed RNA polymerases, and many DNA-directed polymerases, employ a fold whose organisation has been likened to the shape of a right hand with three subdomains termed fingers, palm and thumb []. Only the catalytic palm subdomain, composed of a four-stranded antiparallel β-sheet with two α-helices, is well conserved among all of these enzymes. In RdRp, the palm subdomain comprises three well conserved motifs (A, B and C). Motif A (D-x(4,5)-D) and motif C (GDD) are spatially juxtaposed; the Asp residues of these motifs are implied in the binding of Mg2+ and/or Mn2+. The Asn residue of motif B is involved in selection of ribonucleoside triphosphates over dNTPs and thus determines whether RNA is synthesised rather than DNA [].The domain organisation []and the 3D structure of the catalytic centre of a wide range of RdPp's, even those with a low overall sequence homology, are conserved. The catalytic centre is formed by several motifs containing a number of conserved amino acid residues.There are 4 superfamilies of viruses that cover all RNA containing viruses with no DNA stage:Viruses containing positive-strand RNA or double-strand RNA, except retroviruses and Birnaviridae: viral RNA-directed RNA polymerases including all positive-strand RNA viruses with no DNA stage, double-strand RNA viruses, and the Cystoviridae, Reoviridae, Hypoviridae, Partitiviridae, Totiviridae families.Mononegavirales (negative-strand RNA viruses with non-segmented genomes).Negative-strand RNA viruses with segmented genomes, i.e. Orthomyxoviruses (including influenza A, B, and C viruses, Thogotoviruses, and the infectious salmon anemia virus), Arenaviruses, Bunyaviruses, Hantaviruses, Nairoviruses, Phleboviruses, Tenuiviruses and Tospoviruses.Birnaviridae family of dsRNA viruses.The RNA-directed RNA polymerases in the first of the above superfamilies can be divided into the following three subgroups:All positive-strand RNA eukaryotic viruses with no DNA stage.All RNA-containing bacteriophages -there are two families of RNA-containing bacteriophages: Leviviridae (positive ssRNA phages) and Cystoviridae (dsRNA phages).Reoviridae family of dsRNA viruses.This superfamily represents the "palm"domain of RdRp from Birnavirus. These proteins lack the highly conserved Gly-Asp-Asp (GDD) sequence, a component of the proposed catalytic site of this enzyme family that exists in the conserved motif VI of the palm domain of other RNA-directed RNA polymerases [, ]. The catalytic motifs are arranged in a permuted order, thus, adopting a unique active site topology []. This domain adopts and α/β structure. |
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•
•
•
•
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| Protein Domain |
| Type: |
Homologous_superfamily |
| Description: |
Prp8 is the largest and most highly conserved spliceosomal protein and is considered a master regulator of the spliceosome. It forms a salt-stable complex with the Brr2 helicase that is required for spliceosome catalytic activation and disassembly, and with the Snu114 GTPase that regulates Brr2 activity. Prp8 consists of a phylogenetically conserved Rnase H fold along with Prp8-specific elements. The function of this domain is to help assemble and stabilise the spliceosomal catalytic core and coordinate the activities of other splicing factors []. The overall structure of Rnase H is reminiscent of a left-hand mitten, in which a central six-stranded mixed β-sheet and the surrounding α-helices of the N-terminal domain correspond to the palm, an extended β-hairpin of the N-terminal domain comprises the thumb and the α-helical C-terminal domain represents the fingers []. This entry represents the palm region of the Rnase H domain which also includes the β-hairpin thumb. |
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•
•
•
|
| GXD Expression |
| Probe: |
MGI:5493267 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2013-07-02 |
| Strength: |
Weak |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1742821 |
| Pattern: |
Regionally restricted |
| Stage: |
TS21 |
| Assay Id: |
MGI:5493271 |
| Age: |
embryonic day 13.5 |
| Image: |
6E |
| Note: |
Weak expression in superficial layers in palm and in proximal part of digits excluding digit tips. |
| Specimen Label: |
6E |
| Detected: |
true |
| Specimen Num: |
12 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Homologous_superfamily |
| Description: |
In coronaviruses, papain-like protease (PL(pro)) cleaves the viral replicase polyproteins at different sites releasing non-structural protein NSP1, NSP2, NSP3, and a chymotrypsin-like protease (3CLpro) that cleaves all junctions downstream of NSP4 [].Structurally, coronaviruses papain-like protease consists of a C-terminal catalytic domain containing a right-handed fingers, palm, and thumb domain organisation as well as an N-terminal Ub-like (UBL) domain [, , ].This superfamily represents the palm and finger domains found in papain-like protease from beta and gamma coronaviruses, respectively consisting of 8 and 5 antiparallel β-sheets in MERS-CoV []and 6 and 4 antiparallel β-sheets in SARS-CoV []. |
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| Publication |
| First Author: |
Ito J |
| Year: |
1991 |
| Journal: |
Nucleic Acids Res |
| Title: |
Compilation and alignment of DNA polymerase sequences. |
| Volume: |
19 |
| Issue: |
15 |
| Pages: |
4045-57 |
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| Publication |
| First Author: |
Braithwaite DK |
| Year: |
1993 |
| Journal: |
Nucleic Acids Res |
| Title: |
Compilation, alignment, and phylogenetic relationships of DNA polymerases. |
| Volume: |
21 |
| Issue: |
4 |
| Pages: |
787-802 |
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| Protein Domain |
| Type: |
Domain |
| Description: |
Synonym(s): DNA nucleotidyltransferase (DNA-directed) DNA-directed DNA polymerases() are the key enzymes catalysing the accurate replication of DNA. They require either a small RNA molecule or a protein as a primer for the de novosynthesis of a DNA chain. A number of polymerases belong to this family [, , ]. |
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| Publication |
| First Author: |
Gorbalenya AE |
| Year: |
2002 |
| Journal: |
J Mol Biol |
| Title: |
The palm subdomain-based active site is internally permuted in viral RNA-dependent RNA polymerases of an ancient lineage. |
| Volume: |
324 |
| Issue: |
1 |
| Pages: |
47-62 |
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| Gene |
| Type: |
gene |
| Organism: |
human |
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| Publication |
| First Author: |
Schmelz S |
| Year: |
2009 |
| Journal: |
Nat Chem Biol |
| Title: |
AcsD catalyzes enantioselective citrate desymmetrization in siderophore biosynthesis. |
| Volume: |
5 |
| Issue: |
3 |
| Pages: |
174-82 |
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| Publication |
| First Author: |
Anantharaman V |
| Year: |
2010 |
| Journal: |
Biol Direct |
| Title: |
Presence of a classical RRM-fold palm domain in Thg1-type 3'- 5'nucleic acid polymerases and the origin of the GGDEF and CRISPR polymerase domains. |
| Volume: |
5 |
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| Pages: |
43 |
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| Publication |
| First Author: |
Czopik AK |
| Year: |
2006 |
| Journal: |
Immunity |
| Title: |
Semaphorin 7A is a negative regulator of T cell responses. |
| Volume: |
24 |
| Issue: |
5 |
| Pages: |
591-600 |
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| Publication |
| First Author: |
Aid T |
| Year: |
2007 |
| Journal: |
J Neurosci Res |
| Title: |
Mouse and rat BDNF gene structure and expression revisited. |
| Volume: |
85 |
| Issue: |
3 |
| Pages: |
525-35 |
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| Publication |
| First Author: |
Klenk HP |
| Year: |
1992 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Component H of the DNA-dependent RNA polymerases of Archaea is homologous to a subunit shared by the three eucaryal nuclear RNA polymerases. |
| Volume: |
89 |
| Issue: |
1 |
| Pages: |
407-10 |
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| Publication |
| First Author: |
Honka E |
| Year: |
1990 |
| Journal: |
Eur J Biochem |
| Title: |
Properties and primary structure of the L-malate dehydrogenase from the extremely thermophilic archaebacterium Methanothermus fervidus. |
| Volume: |
188 |
| Issue: |
3 |
| Pages: |
623-32 |
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| Publication |
| First Author: |
Barreto GE |
| Year: |
2012 |
| Journal: |
Exp Neurol |
| Title: |
Effects of heat shock protein 72 (Hsp72) on evolution of astrocyte activation following stroke in the mouse. |
| Volume: |
238 |
| Issue: |
2 |
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284-96 |
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| Publication |
| First Author: |
Timmusk T |
| Year: |
2002 |
| Journal: |
Mol Cell Neurosci |
| Title: |
Dendritic localization of mammalian neuralized mRNA encoding a protein with transcription repression activities. |
| Volume: |
20 |
| Issue: |
4 |
| Pages: |
649-68 |
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
155
 |
| Fragment?: |
true |
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| Publication |
| First Author: |
Pena V |
| Year: |
2008 |
| Journal: |
EMBO J |
| Title: |
Structure and function of an RNase H domain at the heart of the spliceosome. |
| Volume: |
27 |
| Issue: |
21 |
| Pages: |
2929-40 |
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| Publication |
| First Author: |
Swan MK |
| Year: |
2009 |
| Journal: |
Nat Struct Mol Biol |
| Title: |
Structural basis of high-fidelity DNA synthesis by yeast DNA polymerase delta. |
| Volume: |
16 |
| Issue: |
9 |
| Pages: |
979-86 |
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| Publication |
| First Author: |
Wynne SA |
| Year: |
2013 |
| Journal: |
PLoS One |
| Title: |
Structures of an apo and a binary complex of an evolved archeal B family DNA polymerase capable of synthesising highly cy-dye labelled DNA. |
| Volume: |
8 |
| Issue: |
8 |
| Pages: |
e70892 |
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| Publication |
| First Author: |
Bailey-Elkin BA |
| Year: |
2014 |
| Journal: |
J Biol Chem |
| Title: |
Crystal structure of the Middle East respiratory syndrome coronavirus (MERS-CoV) papain-like protease bound to ubiquitin facilitates targeted disruption of deubiquitinating activity to demonstrate its role in innate immune suppression. |
| Volume: |
289 |
| Issue: |
50 |
| Pages: |
34667-82 |
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| Publication |
| First Author: |
Aricò M |
| Year: |
1992 |
| Journal: |
Clin Exp Dermatol |
| Title: |
Localized crusted scabies in the acquired immunodeficiency syndrome. |
| Volume: |
17 |
| Issue: |
5 |
| Pages: |
339-41 |
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| Publication |
| First Author: |
Faesen AC |
| Year: |
2012 |
| Journal: |
Biochem Soc Trans |
| Title: |
The role of UBL domains in ubiquitin-specific proteases. |
| Volume: |
40 |
| Issue: |
3 |
| Pages: |
539-45 |
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| Publication |
| First Author: |
Rullinkov G |
| Year: |
2009 |
| Journal: |
Biochem Biophys Res Commun |
| Title: |
Neuralized-2: expression in human and rodents and interaction with Delta-like ligands. |
| Volume: |
389 |
| Issue: |
3 |
| Pages: |
420-5 |
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| Publication |
| First Author: |
Zühlsdorf M |
| Year: |
2015 |
| Journal: |
PLoS Pathog |
| Title: |
Dimerization-Induced Allosteric Changes of the Oxyanion-Hole Loop Activate the Pseudorabies Virus Assemblin pUL26N, a Herpesvirus Serine Protease. |
| Volume: |
11 |
| Issue: |
7 |
| Pages: |
e1005045 |
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| Publication |
| First Author: |
Cammarano P |
| Year: |
1992 |
| Journal: |
J Mol Evol |
| Title: |
Early evolutionary relationships among known life forms inferred from elongation factor EF-2/EF-G sequences: phylogenetic coherence and structure of the archaeal domain. |
| Volume: |
34 |
| Issue: |
5 |
| Pages: |
396-405 |
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| Publication |
| First Author: |
Creti R |
| Year: |
1994 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Evolution of translational elongation factor (EF) sequences: reliability of global phylogenies inferred from EF-1 alpha(Tu) and EF-2(G) proteins. |
| Volume: |
91 |
| Issue: |
8 |
| Pages: |
3255-9 |
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| Publication |
| First Author: |
Anand K |
| Year: |
2002 |
| Journal: |
EMBO J |
| Title: |
Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain. |
| Volume: |
21 |
| Issue: |
13 |
| Pages: |
3213-24 |
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| Publication |
| First Author: |
Bogdanović X |
| Year: |
2016 |
| Journal: |
FEBS Lett |
| Title: |
Structural evidence of intramolecular propeptide inhibition of the aspzincin metalloendopeptidase AsaP1. |
| Volume: |
590 |
| Issue: |
18 |
| Pages: |
3280-94 |
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| Publication |
| First Author: |
Lubkowski J |
| Year: |
1996 |
| Journal: |
Eur J Biochem |
| Title: |
Crystal structure and amino acid sequence of Wolinella succinogenes L-asparaginase. |
| Volume: |
241 |
| Issue: |
1 |
| Pages: |
201-7 |
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| Publication |
| First Author: |
Persson MF |
| Year: |
2012 |
| Journal: |
Diabetologia |
| Title: |
Coenzyme Q10 prevents GDP-sensitive mitochondrial uncoupling, glomerular hyperfiltration and proteinuria in kidneys from db/db mice as a model of type 2 diabetes. |
| Volume: |
55 |
| Issue: |
5 |
| Pages: |
1535-43 |
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| Publication |
| First Author: |
Bertolini A |
| Year: |
2024 |
| Journal: |
J Hepatol |
| Title: |
Prominent role of gut dysbiosis in the pathogenesis of cystic fibrosis-related liver disease in mice. |
| Volume: |
81 |
| Issue: |
3 |
| Pages: |
429-440 |
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| Publication |
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Hockemeyer D |
| Year: |
2008 |
| Journal: |
Genes Dev |
| Title: |
Engineered telomere degradation models dyskeratosis congenita. |
| Volume: |
22 |
| Issue: |
13 |
| Pages: |
1773-85 |
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| Publication |
| First Author: |
Poole JA |
| Year: |
2011 |
| Journal: |
Am J Physiol Lung Cell Mol Physiol |
| Title: |
Organic dust augments nucleotide-binding oligomerization domain expression via an NF-{kappa}B pathway to negatively regulate inflammatory responses. |
| Volume: |
301 |
| Issue: |
3 |
| Pages: |
L296-306 |
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