Type |
Details |
Score |
Publication |
First Author: |
Cooper P |
Year: |
1993 |
Journal: |
Genomics |
Title: |
Physical mapping of 2000 kb of the mouse X chromosome in the vicinity of the Xist locus. |
Volume: |
15 |
Issue: |
3 |
Pages: |
570-5 |
|
•
•
•
•
•
|
Publication |
First Author: |
Harris B |
Year: |
1994 |
Journal: |
Mouse Genome |
Title: |
Tabby remutation |
Volume: |
92 |
Issue: |
1 |
Pages: |
116 |
|
•
•
•
•
•
|
Publication |
First Author: |
Brockdorff N |
Year: |
1991 |
Journal: |
Nature |
Title: |
Conservation of position and exclusive expression of mouse Xist from the inactive X chromosome. |
Volume: |
351 |
Issue: |
6324 |
Pages: |
329-31 |
|
•
•
•
•
•
|
Publication |
First Author: |
Derry JM |
Year: |
1989 |
Journal: |
Cytogenet Cell Genet |
Title: |
Localization of the Ccg1 gene on the mouse X Chromosome. |
Volume: |
51 |
|
Pages: |
988 (Abstr.) |
|
•
•
•
•
•
|
Publication |
First Author: |
Pointud JC |
Year: |
2003 |
Journal: |
J Cell Sci |
Title: |
The intracellular localisation of TAF7L, a paralogue of transcription factor TFIID subunit TAF7, is developmentally regulated during male germ-cell differentiation. |
Volume: |
116 |
Issue: |
Pt 9 |
Pages: |
1847-58 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhang Q |
Year: |
2019 |
Journal: |
Mol Reprod Dev |
Title: |
Deletion of Prl7d1 causes placental defects at mid-pregnancy in mice. |
Volume: |
86 |
Issue: |
6 |
Pages: |
696-713 |
|
•
•
•
•
•
|
Publication |
First Author: |
Keer JT |
Year: |
1990 |
Journal: |
Genomics |
Title: |
Genetic mapping in the region of the mouse X-inactivation center. |
Volume: |
7 |
Issue: |
4 |
Pages: |
566-72 |
|
•
•
•
•
•
|
Publication |
First Author: |
Brockdorff N |
Year: |
1991 |
Journal: |
Genomics |
Title: |
High-density molecular map of the central span of the mouse X chromosome. |
Volume: |
10 |
Issue: |
1 |
Pages: |
17-22 |
|
•
•
•
•
•
|
Publication |
First Author: |
Stayton CL |
Year: |
1994 |
Journal: |
Hum Mol Genet |
Title: |
Cloning and characterization of a new human Xq13 gene, encoding a putative helicase. |
Volume: |
3 |
Issue: |
11 |
Pages: |
1957-64 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hamvas RM |
Year: |
1992 |
Journal: |
Genomics |
Title: |
Rps4 maps near the inactivation center on the mouse X chromosome. |
Volume: |
12 |
Issue: |
2 |
Pages: |
363-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Cattanach BM |
Year: |
1991 |
Journal: |
Cytogenet Cell Genet |
Title: |
Genetic and molecular evidence of an X-chromosome deletion spanning the tabby (Ta) and testicular feminization (Tfm) loci in the mouse. |
Volume: |
56 |
Issue: |
3-4 |
Pages: |
137-43 |
|
•
•
•
•
•
|
Publication |
First Author: |
Borsani G |
Year: |
1991 |
Journal: |
Nature |
Title: |
Characterization of a murine gene expressed from the inactive X chromosome. |
Volume: |
351 |
Issue: |
6324 |
Pages: |
325-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Brown SD |
Year: |
1991 |
Journal: |
Bioessays |
Title: |
XIST and the mapping of the X chromosome inactivation centre. |
Volume: |
13 |
Issue: |
11 |
Pages: |
607-12 |
|
•
•
•
•
•
|
Publication |
First Author: |
DiSanto JP |
Year: |
1994 |
Journal: |
Eur J Immunol |
Title: |
The murine interleukin-2 receptor gamma chain gene: organization, chromosomal localization and expression in the adult thymus. |
Volume: |
24 |
Issue: |
12 |
Pages: |
3014-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Freiman RN |
Year: |
2001 |
Journal: |
Science |
Title: |
Requirement of tissue-selective TBP-associated factor TAFII105 in ovarian development. |
Volume: |
293 |
Issue: |
5537 |
Pages: |
2084-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Guermah M |
Year: |
2003 |
Journal: |
Mol Cell |
Title: |
The TBN protein, which is essential for early embryonic mouse development, is an inducible TAFII implicated in adipogenesis. |
Volume: |
12 |
Issue: |
4 |
Pages: |
991-1001 |
|
•
•
•
•
•
|
Publication |
First Author: |
Reed V |
Year: |
1994 |
Journal: |
Mamm Genome |
Title: |
Mapping of loci and translocation breakpoints in Xq13: isolation of a conserved locus that maps close to CCG1 in human and mouse. |
Volume: |
5 |
Issue: |
4 |
Pages: |
237-40 |
|
•
•
•
•
•
|
Publication |
First Author: |
Boutet SC |
Year: |
2010 |
Journal: |
Mol Cell |
Title: |
Taf1 regulates Pax3 protein by monoubiquitination in skeletal muscle progenitors. |
Volume: |
40 |
Issue: |
5 |
Pages: |
749-61 |
|
•
•
•
•
•
|
Publication |
First Author: |
Quesnel-Vallières M |
Year: |
2015 |
Journal: |
Genes Dev |
Title: |
Essential roles for the splicing regulator nSR100/SRRM4 during nervous system development. |
Volume: |
29 |
Issue: |
7 |
Pages: |
746-59 |
|
•
•
•
•
•
|
Publication |
First Author: |
Alpern D |
Year: |
2014 |
Journal: |
Elife |
Title: |
TAF4, a subunit of transcription factor II D, directs promoter occupancy of nuclear receptor HNF4A during post-natal hepatocyte differentiation. |
Volume: |
3 |
|
Pages: |
e03613 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tatarakis A |
Year: |
2008 |
Journal: |
Mol Cell |
Title: |
Dominant and redundant functions of TFIID involved in the regulation of hepatic genes. |
Volume: |
31 |
Issue: |
4 |
Pages: |
531-43 |
|
•
•
•
•
•
|
Publication |
First Author: |
El-Saafin F |
Year: |
2022 |
Journal: |
Cell Death Differ |
Title: |
Loss of TAF8 causes TFIID dysfunction and p53-mediated apoptotic neuronal cell death. |
Volume: |
29 |
Issue: |
5 |
Pages: |
1013-1027 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bardot P |
Year: |
2017 |
Journal: |
Development |
Title: |
The TAF10-containing TFIID and SAGA transcriptional complexes are dispensable for early somitogenesis in the mouse embryo. |
Volume: |
144 |
Issue: |
20 |
Pages: |
3808-3818 |
|
•
•
•
•
•
|
Publication |
First Author: |
Langer D |
Year: |
2016 |
Journal: |
Nat Commun |
Title: |
Essential role of the TFIID subunit TAF4 in murine embryogenesis and embryonic stem cell differentiation. |
Volume: |
7 |
|
Pages: |
11063 |
|
•
•
•
•
•
|
Publication |
First Author: |
Allis CD |
Year: |
2007 |
Journal: |
Cell |
Title: |
New nomenclature for chromatin-modifying enzymes. |
Volume: |
131 |
Issue: |
4 |
Pages: |
633-6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kamileri I |
Year: |
2012 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Defective transcription initiation causes postnatal growth failure in a mouse model of nucleotide excision repair (NER) progeria. |
Volume: |
109 |
Issue: |
8 |
Pages: |
2995-3000 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Sequence and Mouse Genome Informatics Scientific Curators |
Year: |
2001 |
|
Title: |
Mouse Genome Sequence Project Annotation |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Shimizu H |
Year: |
2013 |
Journal: |
PLoS One |
Title: |
The AERO system: a 3D-like approach for recording gene expression patterns in the whole mouse embryo. |
Volume: |
8 |
Issue: |
10 |
Pages: |
e75754 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shanghai Model Organisms Center |
Year: |
2017 |
Journal: |
MGI Direct Data Submission |
Title: |
Information obtained from the Shanghai Model Organisms Center (SMOC), Shanghai, China |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Birgit Meldal and Sandra Orchard (1). (1) European Bioinformatics Institute (EBI), Hinxton, Cambridgeshire, United Kingdom |
Year: |
2023 |
|
Title: |
Manual transfer of experimentally-verified manual GO annotation data to homologous complexes by curator judgment of sequence, composition and function similarity |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
International Committee on Standardized Genetic Nomenclature for Mice |
Year: |
1993 |
|
Title: |
Nomenclature rule change to delete hyphens and parentheses from mouse locus symbols |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GO Central curators, GOA curators, Rhea curators |
Year: |
2020 |
|
Title: |
Automatic Gene Ontology annotation based on Rhea mapping |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Ko MS |
Year: |
2000 |
Journal: |
Development |
Title: |
Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. |
Volume: |
127 |
Issue: |
8 |
Pages: |
1737-49 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yokoyama S |
Year: |
2009 |
Journal: |
Dev Cell |
Title: |
A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. |
Volume: |
17 |
Issue: |
6 |
Pages: |
836-48 |
|
•
•
•
•
•
|
Publication |
First Author: |
GOA curators, MGI curators |
Year: |
2001 |
|
Title: |
Gene Ontology annotation based on Enzyme Commission mapping |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2003 |
Journal: |
Database Download |
Title: |
Integrating Computational Gene Models into the Mouse Genome Informatics (MGI) Database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2016 |
|
Title: |
Automatic assignment of GO terms using logical inference, based on on inter-ontology links |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Gray PA |
Year: |
2004 |
Journal: |
Science |
Title: |
Mouse brain organization revealed through direct genome-scale TF expression analysis. |
Volume: |
306 |
Issue: |
5705 |
Pages: |
2255-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations for FANTOM2 data |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GUDMAP Consortium |
Year: |
2004 |
Journal: |
www.gudmap.org |
Title: |
GUDMAP: the GenitoUrinary Development Molecular Anatomy Project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
DDB, FB, MGI, GOA, ZFIN curators |
Year: |
2001 |
|
Title: |
Gene Ontology annotation through association of InterPro records with GO terms |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2003 |
|
Title: |
MGI Sequence Curation Reference |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
MGD Nomenclature Committee |
Year: |
1995 |
|
Title: |
Nomenclature Committee Use |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Zambrowicz BP |
Year: |
2003 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. |
Volume: |
100 |
Issue: |
24 |
Pages: |
14109-14 |
|
•
•
•
•
•
|
Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
|
Title: |
GemPharmatech Website. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI) |
Year: |
2008 |
Journal: |
Database Download |
Title: |
Mouse Gene Trap Data Load from dbGSS |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators |
Year: |
2011 |
|
Title: |
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
Year: |
2004 |
Journal: |
Database Release |
Title: |
Mouse T31 Radiation Hybrid Data Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Okazaki Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
563-73 |
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Diez-Roux G |
Year: |
2011 |
Journal: |
PLoS Biol |
Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Volume: |
9 |
Issue: |
1 |
Pages: |
e1000582 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
MGI Genome Annotation Group and UniGene Staff |
Year: |
2015 |
Journal: |
Database Download |
Title: |
MGI-UniGene Interconnection Effort |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
|
Title: |
Annotation inferences using phylogenetic trees |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
|
|
|
•
•
•
•
•
|
UniProt Feature |
Begin: |
282 |
Description: |
Phosphoserine; by TAF1 |
Type: |
modified residue |
End: |
282 |
|
•
•
•
•
•
|
UniProt Feature |
Begin: |
318 |
Description: |
Phosphoserine; by TAF1 |
Type: |
modified residue |
End: |
318 |
|
•
•
•
•
•
|
UniProt Feature |
Begin: |
283 |
Description: |
Phosphoserine; by TAF1 |
Type: |
modified residue |
End: |
283 |
|
•
•
•
•
•
|
UniProt Feature |
Begin: |
323 |
Description: |
Phosphoserine; by TAF1 |
Type: |
modified residue |
End: |
323 |
|
•
•
•
•
•
|
Allele |
Name: |
TATA-box binding protein associated factor 1; endonuclease-mediated mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Conditional ready, No functional change |
|
•
•
•
•
•
|
Publication |
First Author: |
Kim J |
Year: |
2001 |
Journal: |
J Cell Biol |
Title: |
Cvt9/Gsa9 functions in sequestering selective cytosolic cargo destined for the vacuole. |
Volume: |
153 |
Issue: |
2 |
Pages: |
381-96 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
This entry represents a domain found in C terminus of Atg11. Proteins containing this domain include Taf1 and Atg11. In Schizosaccharomyces pombe (fission yeast) Taf1 (taz1 interacting factor) is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) Atg11 is known to be involved in vacuolar targeting and peroxisome degradation [, ]. |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
227
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Yorimitsu T |
Year: |
2005 |
Journal: |
Mol Biol Cell |
Title: |
Atg11 links cargo to the vesicle-forming machinery in the cytoplasm to vacuole targeting pathway. |
Volume: |
16 |
Issue: |
4 |
Pages: |
1593-605 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1588
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1467
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1468
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1588
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Morinière J |
Year: |
2009 |
Journal: |
Nature |
Title: |
Cooperative binding of two acetylation marks on a histone tail by a single bromodomain. |
Volume: |
461 |
Issue: |
7264 |
Pages: |
664-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Leurent C |
Year: |
2004 |
Journal: |
EMBO J |
Title: |
Mapping key functional sites within yeast TFIID. |
Volume: |
23 |
Issue: |
4 |
Pages: |
719-27 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wang H |
Year: |
2014 |
Journal: |
Cell Res |
Title: |
Crystal structure of a TAF1-TAF7 complex in human transcription factor IID reveals a promoter binding module. |
Volume: |
24 |
Issue: |
12 |
Pages: |
1433-44 |
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Publication |
First Author: |
Bhattacharya S |
Year: |
2014 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Structural and functional insight into TAF1-TAF7, a subcomplex of transcription factor II D. |
Volume: |
111 |
Issue: |
25 |
Pages: |
9103-8 |
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Protein Domain |
Type: |
Domain |
Description: |
Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID is a RNA polymerase II-specific TATA-binding protein-associated factor (TAF) that is essential for viability.This group represents a transcription initiation factor TFIID subunit 1 (TAF1, also known as cell cycle gene 1 protein) [, , ]. This is the largest subunit and the core scaffold of the complex, contains Ser/Thr kinase domains which can autophosphorylate or transphosphorylate other transcription factors including TP53, GTF2A1 and GTF2F1 [, ], and has acetyltransferase activity towards histones H3 and H4 []. It is essential for progression of the G1 phase of the cell cycle [].This entry represents the histone acetyltransferase domain (HAT, formerly known as DUF3591) that is found centrally in the protein TAF1 from eukaryotes. This region is highly conserved from yeast to human. X-ray determination of the crystal structure show it has a compact architecture that consists of a winged helix (WH) domain that folds on top of a triple barrel and a C-terminal α-helical region. The WH domain has intrinsic DNA-binding activity [, , , ]. |
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Publication |
First Author: |
Sun J |
Year: |
2015 |
Journal: |
Mol Vis |
Title: |
Chromatin features, RNA polymerase II and the comparative expression of lens genes encoding crystallins, transcription factors, and autophagy mediators. |
Volume: |
21 |
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Pages: |
955-73 |
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