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Search results 201 to 251 out of 251 for Taf5

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Type Details Score
Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
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Publication
- | J:164563
       
First Author: The Gene Ontology Consortium
Year: 2010
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
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Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
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Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
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Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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GXD Expression
GXD Expression
   
Probe: MGI:7641292
Assay Type: RT-PCR
Annotation Date: 2024-05-21
Strength: Present
Sex: Not Specified
Emaps: EMAPS:360464
Stage: TS04
Assay Id: MGI:7641360
Age: embryonic day 3.5
Image: 1
Specimen Label: Taf5 -/-
Detected: true
Specimen Num: 1
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GXD Expression
GXD Expression
   
Probe: MGI:7641292
Assay Type: RT-PCR
Annotation Date: 2024-05-21
Strength: Present
Sex: Not Specified
Emaps: EMAPS:360464
Stage: TS04
Assay Id: MGI:7641360
Age: embryonic day 3.5
Image: 1
Specimen Label: Taf5 -/-
Detected: true
Specimen Num: 2
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GXD Expression
GXD Expression
   
Probe: MGI:7641292
Assay Type: RT-PCR
Annotation Date: 2024-05-21
Strength: Present
Sex: Not Specified
Emaps: EMAPS:360464
Stage: TS04
Assay Id: MGI:7641360
Age: embryonic day 3.5
Image: 1
Specimen Label: Taf5 +/-
Detected: true
Specimen Num: 3
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GXD Expression
GXD Expression
   
Probe: MGI:7641292
Assay Type: RT-PCR
Annotation Date: 2024-05-21
Strength: Present
Sex: Not Specified
Emaps: EMAPS:360464
Stage: TS04
Assay Id: MGI:7641360
Age: embryonic day 3.5
Image: 1
Specimen Label: Taf5 +/-
Detected: true
Specimen Num: 4
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GXD Expression
GXD Expression
   
Probe: MGI:7641291
Assay Type: RT-PCR
Annotation Date: 2024-05-21
Strength: Present
Sex: Not Specified
Emaps: EMAPS:360464
Stage: TS04
Assay Id: MGI:7641364
Age: embryonic day 3.5
Image: 1
Specimen Label: Taf5 -/-
Detected: true
Specimen Num: 1
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GXD Expression
GXD Expression
   
Probe: MGI:7641291
Assay Type: RT-PCR
Annotation Date: 2024-05-21
Strength: Present
Sex: Not Specified
Emaps: EMAPS:360464
Stage: TS04
Assay Id: MGI:7641364
Age: embryonic day 3.5
Image: 1
Specimen Label: Taf5 -/-
Detected: true
Specimen Num: 2
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GXD Expression
GXD Expression
   
Probe: MGI:7641291
Assay Type: RT-PCR
Annotation Date: 2024-05-21
Strength: Present
Sex: Not Specified
Emaps: EMAPS:360464
Stage: TS04
Assay Id: MGI:7641364
Age: embryonic day 3.5
Image: 1
Specimen Label: Taf5 +/-
Detected: true
Specimen Num: 3
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GXD Expression
GXD Expression
   
Probe: MGI:7641291
Assay Type: RT-PCR
Annotation Date: 2024-05-21
Strength: Present
Sex: Not Specified
Emaps: EMAPS:360464
Stage: TS04
Assay Id: MGI:7641364
Age: embryonic day 3.5
Image: 1
Specimen Label: Taf5 +/-
Detected: true
Specimen Num: 4
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GXD Expression
GXD Expression
   
Probe: MGI:7641290
Assay Type: RT-PCR
Annotation Date: 2024-05-21
Strength: Present
Sex: Not Specified
Emaps: EMAPS:360464
Stage: TS04
Assay Id: MGI:7641365
Age: embryonic day 3.5
Image: 1
Specimen Label: Taf5 -/-
Detected: true
Specimen Num: 1
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GXD Expression
GXD Expression
   
Probe: MGI:7641290
Assay Type: RT-PCR
Annotation Date: 2024-05-21
Strength: Present
Sex: Not Specified
Emaps: EMAPS:360464
Stage: TS04
Assay Id: MGI:7641365
Age: embryonic day 3.5
Image: 1
Specimen Label: Taf5 -/-
Detected: true
Specimen Num: 2
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GXD Expression
GXD Expression
   
Probe: MGI:7641290
Assay Type: RT-PCR
Annotation Date: 2024-05-21
Strength: Present
Sex: Not Specified
Emaps: EMAPS:360464
Stage: TS04
Assay Id: MGI:7641365
Age: embryonic day 3.5
Image: 1
Specimen Label: Taf5 +/-
Detected: true
Specimen Num: 3
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GXD Expression
GXD Expression
   
Probe: MGI:7641290
Assay Type: RT-PCR
Annotation Date: 2024-05-21
Strength: Present
Sex: Not Specified
Emaps: EMAPS:360464
Stage: TS04
Assay Id: MGI:7641365
Age: embryonic day 3.5
Image: 1
Specimen Label: Taf5 +/-
Detected: true
Specimen Num: 4
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Publication
17227857 | -
First Author: Bhattacharya S
Year: 2007
Journal: Proc Natl Acad Sci U S A
Title: Structural analysis and dimerization potential of the human TAF5 subunit of TFIID.
Volume: 104
Issue: 4
Pages: 1189-94
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Publication
22696218 | -
First Author: Scheer E
Year: 2012
Journal: J Biol Chem
Title: TFIID TAF6-TAF9 complex formation involves the HEAT repeat-containing C-terminal domain of TAF6 and is modulated by TAF5 protein.
Volume: 287
Issue: 33
Pages: 27580-92
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Protein Domain
IPR037264 | TFIID_NTD2_sf
Type: Homologous_superfamily
Description: This region is an all-alpha domain associated with the WD40 helical bundle of the TAF5 subunit of transcription factor TFIID. The domain has distant structural similarity to RNA polymerase II CTD interacting factors. It contains several conserved clefts that are likely to be critical for TFIID complex assembly []. The TAF5 subunit is present twice in the TFIID complex and is critical for the function and assembly of the complex, and the NTD2 (second N-terminal domain) and N-terminal domain are crucial for homodimerisation []. TAF5 has a paralogue gene (TAF5L) which has a redundant function [].The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID [].The N-terminal domain of TAF5 has a multihelical structure with a C-terminal beta-alpha(2)-beta motif, one central buried helix and parallel β-ribbon.
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Publication
17397863 | -
First Author: Romier C
Year: 2007
Journal: J Mol Biol
Title: Crystal structure, biochemical and genetic characterization of yeast and E. cuniculi TAF(II)5 N-terminal domain: implications for TFIID assembly.
Volume: 368
Issue: 5
Pages: 1292-306
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Publication
16206511 | -
First Author: Chistiakov DA
Year: 2005
Journal: Autoimmunity
Title: The TAF5L gene on chromosome 1q42 is associated with type 1 diabetes in Russian affected patients.
Volume: 38
Issue: 4
Pages: 283-93
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Allele
Taf5<em1(IMPC)J> | MGI:6324237
Name: TATA-box binding protein associated factor 5; endonuclease-mediated mutation 1, Jackson
Allele Type: Endonuclease-mediated
Attribute String: Null/knockout
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Protein Domain
IPR007582 | TFIID_NTD2
Type: Domain
Description: This region is an all-alpha domain associated with the WD40 helical bundle of the TAF5 subunit of transcription factor TFIID. The domain has distant structural similarity to RNA polymerase II CTD interacting factors. It contains several conserved clefts that are likely to be critical for TFIID complex assembly []. The TAF5 subunit is present twice in the TFIID complex and is critical for the function and assembly of the complex, and the NTD2 (second N-terminal domain) and N-terminal domain are crucial for homodimerisation []. TAF5 has a paralogue gene (TAF5L) which has a redundant function [].The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID [].
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Strain
MGI:6332409 | C57BL/6NJ-Taf5<em1(IMPC)J>/Mmjax
Attribute String: coisogenic, endonuclease-mediated mutation, mutant strain
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Genotype
Genotype
Symbol: Taf5/Taf5
Background: C57BL/6NJ-Taf5/Mmjax
Zygosity: hm
Has Mutant Allele: true
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Genotype
Genotype
Symbol: Taf5/Taf5<+>
Background: C57BL/6NJ-Taf5/Mmjax
Zygosity: ht
Has Mutant Allele: true
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Publication
31969704 | -
First Author: Papai G
Year: 2020
Journal: Nature
Title: Structure of SAGA and mechanism of TBP deposition on gene promoters.
Volume: 577
Issue: 7792
Pages: 711-716
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Publication
31969703 | -
First Author: Wang H
Year: 2020
Journal: Nature
Title: Structure of the transcription coactivator SAGA.
Volume: 577
Issue: 7792
Pages: 717-720
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Publication
19114550 | J:320037
First Author: Nagy Z
Year: 2009
Journal: Mol Cell Biol
Title: The human SPT20-containing SAGA complex plays a direct role in the regulation of endoplasmic reticulum stress-induced genes.
Volume: 29
Issue: 6
Pages: 1649-60
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Publication
33737195 | -
First Author: Wu CJ
Year: 2021
Journal: Mol Plant
Title: Three functionally redundant plant-specific paralogs are core subunits of the SAGA histone acetyltransferase complex in Arabidopsis.
Volume: 14
Issue: 7
Pages: 1071-1087
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Protein Domain
IPR046468 | Spt20-like_SEP
Type: Domain
Description: This entry represents the SEP domain found in Spt20 from yeast and human [, , ]. The Spt20 protein is part of the SAGA complex which is a large complex mediating histone deacetylation. Yeast Spt20 has been shown to play a role in structural integrity of the SAGA complex as as no intact SAGA could be purified in spt20 deletion strains. Spt20 is indispensable under endoplasmic reticulum (ER) stress conditions, being involved in the regulation of stress-responsive genes transcription. This domain interacts with LisH motif helices of Taf5 []. This domain is also found in Protein PHYTOCHROME-DEPENDENT LATE-FLOWERING (PHL), which is involved in the phytochrome B-dependent regulation of flowering [, , ].
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Publication
10664584 | -
First Author: Green MR
Year: 2000
Journal: Trends Biochem Sci
Title: TBP-associated factors (TAFIIs): multiple, selective transcriptional mediators in common complexes.
Volume: 25
Issue: 2
Pages: 59-63
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Protein
Q7TT00
Organism: Mus musculus/domesticus
Length: 530  
Fragment?: false
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Protein
A0A0G2JE63
Organism: Mus musculus/domesticus
Length: 181  
Fragment?: true
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Protein
A0A0G2JEY3
Organism: Mus musculus/domesticus
Length: 529  
Fragment?: false
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Protein
A0A0G2JGD1
Organism: Mus musculus/domesticus
Length: 141  
Fragment?: true
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Protein
A0A0G2JGY6
Organism: Mus musculus/domesticus
Length: 784  
Fragment?: false
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Publication
24614229 | -
First Author: Endo M
Year: 2014
Journal: Plant Signal Behav
Title: Light-dependent destabilization of PHL in Arabidopsis.
Volume: 9
Issue: 3
Pages: e28118
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Publication
24127609 | -
First Author: Endo M
Year: 2013
Journal: Proc Natl Acad Sci U S A
Title: PHYTOCHROME-DEPENDENT LATE-FLOWERING accelerates flowering through physical interactions with phytochrome B and CONSTANS.
Volume: 110
Issue: 44
Pages: 18017-22
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MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

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