|  Help  |  About  |  Contact Us

Search our database by keyword

Examples

  • Search this entire website. Enter identifiers, names or keywords for genes, diseases, strains, ontology terms, etc. (e.g. Pax6, Parkinson, ataxia)
  • Use OR to search for either of two terms (e.g. OR mus) or quotation marks to search for phrases (e.g. "dna binding").
  • Boolean search syntax is supported: e.g. Balb* for partial matches or mus AND NOT embryo to exclude a term

Search results 201 to 240 out of 240 for Ufd1

<< First    < Previous  |  Next >    Last >>
0.023s

Categories

Hits by Pathway

Hits by Category

Hits by Strain

Type Details Score
Publication
- | J:342605
       
First Author: GOA curators
Year: 2016
Title: Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara
•
•
•
•
•
Publication
- | J:68900
     
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
•
•
•
•
•
Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
•
•
•
•
•
Publication
- | J:164563
       
First Author: The Gene Ontology Consortium
Year: 2010
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
•
•
•
•
•
Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
•
•
•
•
•
Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
•
•
•
•
•
Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
•
•
•
•
•
Publication
- | J:57747
     
First Author: MGI Genome Annotation Group and UniGene Staff
Year: 2015
Journal: Database Download
Title: MGI-UniGene Interconnection Effort
•
•
•
•
•
Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
•
•
•
•
•
Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
•
•
•
•
•
Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
•
•
•
•
•
Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
•
•
•
•
•
Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
•
•
•
•
•
Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
•
•
•
•
•
Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
•
•
•
•
•
Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
•
•
•
•
•
Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
•
•
•
•
•
Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
•
•
•
•
•
Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
•
•
•
•
•
Publication
16004872 | -
First Author: Park S
Year: 2005
Journal: Structure
Title: Ufd1 exhibits the AAA-ATPase fold with two distinct ubiquitin interaction sites.
Volume: 13
Issue: 7
Pages: 995-1005
•
•
•
•
•
Interaction Experiment
Meyer HH (2000)
Description: A complex of mammalian ufd1 and npl4 links the AAA-ATPase, p97, to ubiquitin and nuclear transport pathways.
•
•
•
•
•
Protein Domain
IPR042299 | Ufd1-like_Nn
Type: Homologous_superfamily
Description: This entry includes Ubiquitin fusion degradation protein Ufd1 from fungi and Ufd1-like proteins from animals and plants. Ufd1 is part of the Ufd1-Npl4 complex that functions as the substrate-recruiting cofactor for Cdc48 segregase. The Cdc48-Ufd1-Npl4 complex is involved in degradation of misfolded ER proteins []. The Ufd1-Npl4 complex has been found to recruit Cdc48 to ubiquitylated CMG (Cdc45-MCM-GINS) helicase at the end of chromosome replication, thereby driving the disassembly reaction [].In humans, Npl4-Ufd1 acts as a cofactor in reducing antiviral innate immune responses by facilitating proteasomal degradation of RIG-I (a viral RNA sensor) []. The Ufd1 N-terminal fragment is composed of two readily identifiable subdomains designated as Nn and Nc subdomains. The Nn subdomain adapts a double-psi beta barrel fold, and the Nc subdomain has a mixed alpha/beta roll structure []. This superfamily represents the Nn domain found in Ufd1 proteins.
•
•
•
•
•
Protein
P70362
Organism: Mus musculus/domesticus
Length: 307  
Fragment?: false
•
•
•
•
•
Protein
Q9CZJ3
Organism: Mus musculus/domesticus
Length: 267  
Fragment?: false
•
•
•
•
•
Protein
E9Q0Y6
Organism: Mus musculus/domesticus
Length: 72  
Fragment?: false
•
•
•
•
•
Protein
Q8C2D2
Organism: Mus musculus/domesticus
Length: 307  
Fragment?: false
•
•
•
•
•
Protein
Q9CWQ7
Organism: Mus musculus/domesticus
Length: 307  
Fragment?: false
•
•
•
•
•
Publication
20206597 | -
First Author: Barbin L
Year: 2010
Journal: Biochem Biophys Res Commun
Title: The Cdc48-Ufd1-Npl4 complex is central in ubiquitin-proteasome triggered catabolite degradation of fructose-1,6-bisphosphatase.
Volume: 394
Issue: 2
Pages: 335-41
•
•
•
•
•
Publication
28355556 | -
First Author: Maric M
Year: 2017
Journal: Cell Rep
Title: Ufd1-Npl4 Recruit Cdc48 for Disassembly of Ubiquitylated CMG Helicase at the End of Chromosome Replication.
Volume: 18
Issue: 13
Pages: 3033-3042
•
•
•
•
•
Publication
26471729 | J:227762
First Author: Hao Q
Year: 2015
Journal: EMBO J
Title: A non-canonical role of the p97 complex in RIG-I antiviral signaling.
Volume: 34
Issue: 23
Pages: 2903-20
•
•
•
•
•
Protein
E9Q475
Organism: Mus musculus/domesticus
Length: 48  
Fragment?: false
•
•
•
•
•
Protein
E9Q646
Organism: Mus musculus/domesticus
Length: 58  
Fragment?: false
•
•
•
•
•
Protein
F6SYJ2
Organism: Mus musculus/domesticus
Length: 45  
Fragment?: true
•
•
•
•
•
Protein Domain
IPR004854 | Ufd1-like
Type: Family
Description: This entry includes Ubiquitin fusion degradation protein Ufd1 from fungi and Ufd1-like proteins from animals and plants. Ufd1 is part of the Ufd1-Npl4 complex that functions as the substrate-recruiting cofactor for Cdc48 segregase. The Cdc48-Ufd1-Npl4 complex is involved in degradation of misfolded ER proteins []. The Ufd1-Npl4 complex has been found to recruit Cdc48 to ubiquitylated CMG (Cdc45-MCM-GINS) helicase at the end of chromosome replication, thereby driving the disassembly reaction [].In humans, Npl4-Ufd1 acts as a cofactor in reducing antiviral innate immune responses by facilitating proteasomal degradation of RIG-I (a viral RNA sensor) [].
•
•
•
•
•
Publication
17880284 | -
First Author: Galvão RM
Year: 2008
Journal: Biochem J
Title: Characterization of a new family of protein kinases from Arabidopsis containing phosphoinositide 3/4-kinase and ubiquitin-like domains.
Volume: 409
Issue: 1
Pages: 117-27
•
•
•
•
•
Publication
28254780 | -
First Author: Song S
Year: 2017
Journal: Plant Cell
Title: OsFTIP1-Mediated Regulation of Florigen Transport in Rice Is Negatively Regulated by the Ubiquitin-Like Domain Kinase OsUbDKγ4.
Volume: 29
Issue: 3
Pages: 491-507
•
•
•
•
•
Protein Domain
IPR044571 | P4KG1-8
Type: Family
Description: This entry includes phosphatidylinositol 4-kinase gamma 1-8 (PI4KG1-8) from Arabidopsis and related proteins. They are protein kinases that contain the PI3K/PI4K domain. AtPI4Kgamma4 (also known as PI4KG4) has been shown to interact with and phosphorylate UFD1 (ubiquitin fusion degradation 1) and RPN10 (regulatory particle non-ATPase 10) []. In rice PI4KG4 (also known as OsUbDKgamma4) is involved in the control of flowering under long day conditions by promoting degradation of FTIP1 [].This entry also includes uncharacterised bacterial proteins.
•
•
•
•
•
Publication
20691684 | J:201304
First Author: Kaneko Y
Year: 2010
Journal: FEBS Lett
Title: Isolation of a point-mutated p47 lacking binding affinity to p97ATPase.
Volume: 584
Issue: 18
Pages: 3873-7
•
•
•
•
•
Publication
11740563 | J:73327
First Author: Ye Y
Year: 2001
Journal: Nature
Title: The AAA ATPase Cdc48/p97 and its partners transport proteins from the ER into the cytosol.
Volume: 414
Issue: 6864
Pages: 652-6
•
•
•
•
•
Publication
39471181 | J:358451
First Author: Shao Z
Year: 2024
Journal: PLoS Pathog
Title: The protein segregase VCP/p97 promotes host antifungal defense via regulation of SYK activation.
Volume: 20
Issue: 10
Pages: e1012674
•
•
•
•
•




MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

Copyright © 2017 by The Jackson Laboratory. All Rights Reserved

© 2002 - 2017 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom