Type |
Details |
Score |
Publication |
First Author: |
Mas C |
Year: |
2014 |
Journal: |
J Biol Chem |
Title: |
Structural basis for different phosphoinositide specificities of the PX domains of sorting nexins regulating G-protein signaling. |
Volume: |
289 |
Issue: |
41 |
Pages: |
28554-68 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
424
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
421
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
931
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1544
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
183
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
115
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
3309
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
3309
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
201
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1143
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
627
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1193
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
424
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1473
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
424
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1121
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1220
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
382
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
915
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
798
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
424
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1489
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
163
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
627
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
138
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1577
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
627
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
421
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
99
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
239
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Taylor BL |
Year: |
1999 |
Journal: |
Microbiol Mol Biol Rev |
Title: |
PAS domains: internal sensors of oxygen, redox potential, and light. |
Volume: |
63 |
Issue: |
2 |
Pages: |
479-506 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kang X |
Year: |
2005 |
Journal: |
Plant Cell |
Title: |
HYPERSENSITIVE TO RED AND BLUE 1, a ZZ-type zinc finger protein, regulates phytochrome B-mediated red and cryptochrome-mediated blue light responses. |
Volume: |
17 |
Issue: |
3 |
Pages: |
822-35 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hnia K |
Year: |
2007 |
Journal: |
Biochem J |
Title: |
ZZ domain of dystrophin and utrophin: topology and mapping of a beta-dystroglycan interaction site. |
Volume: |
401 |
Issue: |
3 |
Pages: |
667-77 |
|
•
•
•
•
•
|
Publication |
First Author: |
Nilsson T |
Year: |
1999 |
Journal: |
Eur J Pharmacol |
Title: |
Characterisation of 5-HT receptors in human coronary arteries by molecular and pharmacological techniques. |
Volume: |
372 |
Issue: |
1 |
Pages: |
49-56 |
|
•
•
•
•
•
|
Publication |
First Author: |
Dunford PJ |
Year: |
2010 |
Journal: |
Adv Exp Med Biol |
Title: |
The role of histamine in asthma. |
Volume: |
709 |
|
Pages: |
53-66 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zingel V |
Year: |
1995 |
Journal: |
Prog Drug Res |
Title: |
Developments in histamine H1-receptor agonists. |
Volume: |
44 |
|
Pages: |
49-85 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hla T |
Year: |
1990 |
Journal: |
J Biol Chem |
Title: |
An abundant transcript induced in differentiating human endothelial cells encodes a polypeptide with structural similarities to G-protein-coupled receptors. |
Volume: |
265 |
Issue: |
16 |
Pages: |
9308-13 |
|
•
•
•
•
•
|
Publication |
First Author: |
Roth BL |
Year: |
1994 |
Journal: |
J Pharmacol Exp Ther |
Title: |
Binding of typical and atypical antipsychotic agents to 5-hydroxytryptamine-6 and 5-hydroxytryptamine-7 receptors. |
Volume: |
268 |
Issue: |
3 |
Pages: |
1403-10 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shen D |
Year: |
1994 |
Journal: |
Biochemistry |
Title: |
A human opsin-related gene that encodes a retinaldehyde-binding protein. |
Volume: |
33 |
Issue: |
44 |
Pages: |
13117-25 |
|
•
•
•
•
•
|
Publication |
First Author: |
Anantharaman V |
Year: |
2012 |
Journal: |
Mol Biosyst |
Title: |
Ter-dependent stress response systems: novel pathways related to metal sensing, production of a nucleoside-like metabolite, and DNA-processing. |
Volume: |
8 |
Issue: |
12 |
Pages: |
3142-65 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kupperman E |
Year: |
2000 |
Journal: |
Nature |
Title: |
A sphingosine-1-phosphate receptor regulates cell migration during vertebrate heart development. |
Volume: |
406 |
Issue: |
6792 |
Pages: |
192-5 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tal R |
Year: |
1998 |
Journal: |
J Bacteriol |
Title: |
Three cdg operons control cellular turnover of cyclic di-GMP in Acetobacter xylinum: genetic organization and occurrence of conserved domains in isoenzymes. |
Volume: |
180 |
Issue: |
17 |
Pages: |
4416-25 |
|
•
•
•
•
•
|
Publication |
First Author: |
Keppler D |
Year: |
2011 |
Journal: |
Handb Exp Pharmacol |
Title: |
Multidrug resistance proteins (MRPs, ABCCs): importance for pathophysiology and drug therapy. |
|
Issue: |
201 |
Pages: |
299-323 |
|
•
•
•
•
•
|
Publication |
First Author: |
Jia Z |
Year: |
1997 |
Journal: |
Biochem Cell Biol |
Title: |
Protein phosphatases: structures and implications. |
Volume: |
75 |
Issue: |
1 |
Pages: |
17-26 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
G protein-coupled receptors (GPCRs) constitute a vast protein family that encompasses a wide range of functions, including various autocrine, paracrine and endocrine processes. They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups []. The term clan can be used to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include rhodopsin-like GPCRs (Class A, GPCRA), secretin-like GPCRs (Class B, GPCRB), metabotropic glutamate receptor family (Class C, GPCRC), fungal mating pheromone receptors (Class D, GPCRD), cAMP receptors (Class E, GPCRE) and frizzled/smoothened (Class F, GPCRF) [, , , , ]. GPCRs are major drug targets, and are consequently the subject of considerable research interest. It has been reported that the repertoire of GPCRs for endogenous ligands consists of approximately 400 receptors in humans and mice []. Most GPCRs are identified on the basis of their DNA sequences, rather than the ligand they bind, those that are unmatched to known natural ligands are designated by as orphan GPCRs, or unclassified GPCRs [].The rhodopsin-like GPCRs (GPCRA) represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].Lysophospholipids (LPs), such as lysophosphatidic acid (LPA), sphingosine1-phosphate (S1P) and sphingosylphosphorylcholine (SPC), have long been known to act as signalling molecules in addition to their roles as intermediates in membrane biosynthesis []. They have roles in the regulation of cell growth, differentiation, apoptosis and development, and have been implicated in a wide range of pathophysiological conditions, including: blood clotting, corneal wounding, subarachinoid haemorrhage, inflammation and colitis []. A number of G protein-coupled receptors bind members of the lysophopholipid family - these include: the cannabinoid receptors; platelet activating factor receptor; OGR1, an SPC receptor identified in ovarian cancer cell lines; PSP24, an orphan receptor that has been proposed to bind LPA; and at least 8 closely related receptors, theEDG family, that bind LPA and S1P [].S1P is released from activated platelets and is also produced by a number of other cell types in response to growth factors and cytokines []. It is proposed to act both as an extracellular mediator and as an intracellularsecond messenger. The cellular effects of S1P include growth related effects, such as proliferation, differentiation, cell survival and apoptosis, and cytoskeletal effects, such as chemotaxis, aggregation, adhesion, morphological change and secretion. The molecule has been implicated in control of angiogenesis, inflammation, heart-rate and tumour progression, and may play an important role in a number of disease states, such as atherosclerosis, and breast and ovarian cancer []. Recently, 5 G protein-coupled receptors have been identified that act as high affinity receptors for S1P, and also as low affinity receptors for the related lysophospholipid, SPC []. EDG-1, EDG-3, EDG-5 and EDG-8 share a high degree of similarity, and are also referred to as lpB1, lpB3, lpB2 and lpB4, respectively. EDG-6 is referred to as lpC1, reflecting its more distant relationship to the other S1P receptors.EDG-5 is expressed abundantly in the heart and lung and at lower levels inthe adult brain. It is also expressed strongly in the embryonic brain [, ]. Binding of S1P to EDG-5 activates G proteins of the Gi and Gq classes. G12 and G13 proteins are also constitutively activated by the receptor. These couplings produce a wide range of cellular effects, including: increased cyclic AMP and calcium levels, activation of MAP kinases and actinrearrangement [, ]. The receptor may have a role in neuronal development and, in zebrafish, has been found to be involved in the control of cell migration during development and organogenesis of the heart []. |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
G protein-coupled receptors (GPCRs) constitute a vast protein family that encompasses a wide range of functions, including various autocrine, paracrine and endocrine processes. They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups []. The term clan can be used to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include rhodopsin-like GPCRs (Class A, GPCRA), secretin-like GPCRs (Class B, GPCRB), metabotropic glutamate receptor family (Class C, GPCRC), fungal mating pheromone receptors (Class D, GPCRD), cAMP receptors (Class E, GPCRE) and frizzled/smoothened (Class F, GPCRF) [, , , , ]. GPCRs are major drug targets, and are consequently the subject of considerable research interest. It has been reported that the repertoire of GPCRs for endogenous ligands consists of approximately 400 receptors in humans and mice []. Most GPCRs are identified on the basis of their DNA sequences, rather than the ligand they bind, those that are unmatched to known natural ligands are designated by as orphan GPCRs, or unclassified GPCRs [].The rhodopsin-like GPCRs (GPCRA) represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [,, ].Lysophospholipids (LPs), such as lysophosphatidic acid (LPA), sphingosine1-phosphate (S1P) and sphingosylphosphorylcholine (SPC), have long been known to act as signalling molecules in addition to their roles as intermediates in membrane biosynthesis []. They have roles in the regulation of cell growth, differentiation, apoptosis and development, and have been implicated in a wide range of pathophysiological conditions, including: blood clotting, corneal wounding, subarachinoid haemorrhage, inflammation and colitis []. A number of G protein-coupled receptors bind members of the lysophopholipid family - these include: the cannabinoid receptors; platelet activating factor receptor; OGR1, an SPC receptor identified in ovarian cancer cell lines; PSP24, an orphan receptor that has been proposed to bind LPA; and at least 8 closely related receptors, the EDG family, that bind LPA and S1P [].S1P is released from activated platelets and is also produced by a number of other cell types in response to growth factors and cytokines []. It is proposed to act both as an extracellular mediator and as an intracellularsecond messenger. The cellular effects of S1P include growth related effects, such as proliferation, differentiation, cell survival and apoptosis, and cytoskeletal effects, such as chemotaxis, aggregation, adhesion, morphological change and secretion. The molecule has been implicated in control of angiogenesis, inflammation, heart-rate and tumour progression, and may play an important role in a number of disease states, such as atherosclerosis, and breast and ovarian cancer []. Recently, 5 G protein-coupled receptors have been identified that act as high affinity receptors for S1P, and also as low affinity receptors for the related lysophospholipid, SPC []. EDG-1, EDG-3, EDG-5 and EDG-8 share a high degree of similarity, and are also referred to as lpB1, lpB3, lpB2 and lpB4, respectively. EDG-6 is referred to as lpC1, reflecting its more distant relationship to the other S1P receptors.EDG-3 is expressed at highest levels in the heart, kidney, placenta andliver of humans, with lower levels found in the lung []. In mouse, highest levels are found in the heart, lung, kidney and spleen, with lower levels in the brain, thymus, muscle and testis []. The receptor has also been found in rat Schwann cells, mouse embryonic brain and breast cancer cells []. Binding of S1P to EDG-3 leads to activation of Gi and Gq classes of G proteins. G12 and G13 can also be constitutively activated by the receptor []. These G proteins produce a range of effects, including: inhibition or activation or adenylyl cylase, MAP kinase activation, serum response element activation and phospholipase C activation, leading to cell proliferation and survival [, ]. |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
G protein-coupled receptors (GPCRs) constitute a vast protein family that encompasses a wide range of functions, including various autocrine, paracrine and endocrine processes. They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups []. The term clan can be used to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include rhodopsin-like GPCRs (Class A, GPCRA), secretin-like GPCRs (Class B, GPCRB), metabotropic glutamate receptor family (Class C, GPCRC), fungal mating pheromone receptors (Class D, GPCRD), cAMP receptors (Class E, GPCRE) and frizzled/smoothened (Class F, GPCRF) [, , , , ]. GPCRs are major drug targets, and are consequently the subject of considerable research interest. It has been reported that the repertoire of GPCRs for endogenous ligands consists of approximately 400 receptors in humans and mice []. Most GPCRs are identified on the basis of their DNA sequences, rather than the ligand they bind, those that are unmatched to known natural ligands are designated by as orphan GPCRs, or unclassified GPCRs [].The rhodopsin-like GPCRs (GPCRA) represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].Lysophospholipids (LPs), such as lysophosphatidic acid (LPA), sphingosine1-phosphate (S1P) and sphingosylphosphorylcholine (SPC), have long been known to act as signalling molecules in addition to their roles as intermediates in membrane biosynthesis []. They have roles in the regulation of cell growth, differentiation, apoptosis and development, and have been implicated in a wide range of pathophysiological conditions, including: blood clotting, corneal wounding, subarachinoid haemorrhage, inflammation and colitis []. A number of G protein-coupled receptors bind members of the lysophopholipid family - these include: the cannabinoid receptors; platelet activating factor receptor; OGR1, an SPC receptor identified in ovarian cancer cell lines; PSP24, an orphan receptor that has been proposed to bind LPA; and at least 8 closely related receptors, the EDG family, that bind LPA and S1P [].S1P is released from activated platelets and is also produced by a number of other cell types in response to growth factors and cytokines []. It is proposed to act both as an extracellular mediator and as an intracellularsecond messenger. The cellular effects of S1P include growth related effects, such as proliferation, differentiation, cell survival and apoptosis, and cytoskeletal effects, such as chemotaxis, aggregation, adhesion, morphological change and secretion. The molecule has been implicated in control of angiogenesis, inflammation, heart-rate and tumour progression, and may play an important role in a number of disease states, such as atherosclerosis, and breast and ovarian cancer []. Recently, 5 G protein-coupled receptors have been identified that act as high affinity receptors for S1P, and also as low affinity receptors for the related lysophospholipid, SPC []. EDG-1, EDG-3, EDG-5 and EDG-8 share a high degree of similarity, and are also referred to as lpB1, lpB3, lpB2 and lpB4, respectively. EDG-6 is referred to as lpC1, reflecting its more distant relationship to the other S1P receptors.EDG-1 was the first member of the family to be cloned (from phorbol-esterdifferentiated human endothelial cells); its ligand, however, was unknown, so it was named endothelial differentiation gene (EDG) 1, reflecting its potential function []. EDG-1 is expressed widely, with highest levels in the brain, heart, lung, liver and spleen. Moderate levels are also found in the thymus, kidney and muscle []. Within these regions, EDG-1 is expressed in endothelial cells, vascular smooth muscle, fibroblasts, melanocytes and cells of epithelioid origin []. Upon binding of S1P, the receptor can couple to Gi1, Gi2, Gi3, Go and Gz type G proteins, leading to inhibition of adenylyl cylase, phospholipase C activation and MAP kinase activation [, ]. |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in:Transcription factors P300 and CBP.Plant proteins involved in light responses, such as Hrb1.E3 ubiquitin ligases MEX and MIB2 ().Dystrophin and its homologues.Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel β-sheets and a short α-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion viaa third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues.In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain [].ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination.In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. |
|
•
•
•
•
•
|
Publication |
First Author: |
Smith SJ |
Year: |
2016 |
Journal: |
Dev Biol |
Title: |
The cardiac-restricted protein ADP-ribosylhydrolase-like 1 is essential for heart chamber outgrowth and acts on muscle actin filament assembly. |
Volume: |
416 |
Issue: |
2 |
Pages: |
373-88 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shaw RJ |
Year: |
2005 |
Journal: |
Science |
Title: |
The kinase LKB1 mediates glucose homeostasis in liver and therapeutic effects of metformin. |
Volume: |
310 |
Issue: |
5754 |
Pages: |
1642-6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ambivero CT |
Year: |
2012 |
Journal: |
Biochim Biophys Acta |
Title: |
ATF4 interacts with Abro1/KIAA0157 scaffold protein and participates in a cytoprotective pathway. |
Volume: |
1823 |
Issue: |
12 |
Pages: |
2149-56 |
|
•
•
•
•
•
|
Publication |
First Author: |
Nakashima H |
Year: |
1999 |
Journal: |
Genomics |
Title: |
Two novel mouse genes--Nubp2, mapped to the t-complex on chromosome 17, and Nubp1, mapped to chromosome 16--establish a new gene family of nucleotide-binding proteins in eukaryotes. |
Volume: |
60 |
Issue: |
2 |
Pages: |
152-60 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chew TG |
Year: |
2013 |
Journal: |
PLoS One |
Title: |
A tudor domain protein SPINDLIN1 interacts with the mRNA-binding protein SERBP1 and is involved in mouse oocyte meiotic resumption. |
Volume: |
8 |
Issue: |
7 |
Pages: |
e69764 |
|
•
•
•
•
•
|
Publication |
First Author: |
Nishizawa M |
Year: |
1992 |
Journal: |
FEBS Lett |
Title: |
cDNA clones encoding leucine-zipper proteins which interact with G-CSF gene promoter element 1-binding protein. |
Volume: |
299 |
Issue: |
1 |
Pages: |
36-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
De Graeve F |
Year: |
2000 |
Journal: |
Oncogene |
Title: |
A murine ATFa-associated factor with transcriptional repressing activity. |
Volume: |
19 |
Issue: |
14 |
Pages: |
1807-19 |
|
•
•
•
•
•
|
Publication |
First Author: |
Suzuki T |
Year: |
2002 |
Journal: |
Nat Genet |
Title: |
Hermansky-Pudlak syndrome is caused by mutations in HPS4, the human homolog of the mouse light-ear gene. |
Volume: |
30 |
Issue: |
3 |
Pages: |
321-4 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ponnio T |
Year: |
2002 |
Journal: |
Mol Cell Biol |
Title: |
The nuclear receptor Nor-1 is essential for proliferation of the semicircular canals of the mouse inner ear. |
Volume: |
22 |
Issue: |
3 |
Pages: |
935-45 |
|
•
•
•
•
•
|
Publication |
First Author: |
Nonogaki K |
Year: |
2009 |
Journal: |
Biochem Biophys Res Commun |
Title: |
Serotonin 5-HT2C receptor-independent expression of hypothalamic NOR1, a novel modulator of food intake and energy balance, in mice. |
Volume: |
386 |
Issue: |
2 |
Pages: |
311-5 |
|
•
•
•
•
•
|
Publication |
First Author: |
Charles JF |
Year: |
2012 |
Journal: |
Bone |
Title: |
The collection of NFATc1-dependent transcripts in the osteoclast includes numerous genes non-essential to physiologic bone resorption. |
Volume: |
51 |
Issue: |
5 |
Pages: |
902-12 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tasaki T |
Year: |
2007 |
Journal: |
J Biol Chem |
Title: |
Biochemical and genetic studies of UBR3, a ubiquitin ligase with a function in olfactory and other sensory systems. |
Volume: |
282 |
Issue: |
25 |
Pages: |
18510-20 |
|
•
•
•
•
•
|
Publication |
First Author: |
Krebs CJ |
Year: |
2003 |
Journal: |
Genes Dev |
Title: |
Regulator of sex-limitation (Rsl) encodes a pair of KRAB zinc-finger genes that control sexually dimorphic liver gene expression. |
Volume: |
17 |
Issue: |
21 |
Pages: |
2664-74 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lee FS |
Year: |
1995 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Insertional mutagenesis identifies a member of the Wnt gene family as a candidate oncogene in the mammary epithelium of int-2/Fgf-3 transgenic mice. |
Volume: |
92 |
Issue: |
6 |
Pages: |
2268-72 |
|
•
•
•
•
•
|
Publication |
First Author: |
Li W |
Year: |
2015 |
Journal: |
J Gerontol A Biol Sci Med Sci |
Title: |
Elevated ATF4 function in fibroblasts and liver of slow-aging mutant mice. |
Volume: |
70 |
Issue: |
3 |
Pages: |
263-72 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tylkowski MA |
Year: |
2015 |
Journal: |
Cell Mol Life Sci |
Title: |
Pax6 controls centriole maturation in cortical progenitors through Odf2. |
Volume: |
72 |
Issue: |
9 |
Pages: |
1795-809 |
|
•
•
•
•
•
|
Publication |
First Author: |
Pajvani UB |
Year: |
2013 |
Journal: |
Nat Med |
Title: |
Inhibition of Notch uncouples Akt activation from hepatic lipid accumulation by decreasing mTorc1 stability. |
Volume: |
19 |
Issue: |
8 |
Pages: |
1054-60 |
|
•
•
•
•
•
|
Publication |
First Author: |
Sekiya T |
Year: |
2018 |
Journal: |
Cell Rep |
Title: |
Nr4a Receptors Regulate Development and Death of Labile Treg Precursors to Prevent Generation of Pathogenic Self-Reactive Cells. |
Volume: |
24 |
Issue: |
6 |
Pages: |
1627-1638.e6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Sekiya T |
Year: |
2021 |
Journal: |
iScience |
Title: |
Regulation of peripheral Th/Treg differentiation and suppression of airway inflammation by Nr4a transcription factors. |
Volume: |
24 |
Issue: |
3 |
Pages: |
102166 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tan C |
Year: |
2020 |
Journal: |
Nat Immunol |
Title: |
NR4A nuclear receptors restrain B cell responses to antigen when second signals are absent or limiting. |
Volume: |
21 |
Issue: |
10 |
Pages: |
1267-1279 |
|
•
•
•
•
•
|
Publication |
First Author: |
Liu Q |
Year: |
2022 |
Journal: |
Cell Death Dis |
Title: |
IL-1β-activated mTORC2 promotes accumulation of IFN-γ+ γδ T cells by upregulating CXCR3 to restrict hepatic fibrosis. |
Volume: |
13 |
Issue: |
4 |
Pages: |
289 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ballas ZK |
Year: |
2013 |
Journal: |
PLoS One |
Title: |
Role of NK cell subsets in organ-specific murine melanoma metastasis. |
Volume: |
8 |
Issue: |
6 |
Pages: |
e65599 |
|
•
•
•
•
•
|
Publication |
First Author: |
Rodgers JT |
Year: |
2014 |
Journal: |
Nature |
Title: |
mTORC1 controls the adaptive transition of quiescent stem cells from G0 to G(Alert). |
Volume: |
510 |
Issue: |
7505 |
Pages: |
393-6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chao LC |
Year: |
2013 |
Journal: |
J Lipid Res |
Title: |
Bone marrow NR4A expression is not a dominant factor in the development of atherosclerosis or macrophage polarization in mice. |
Volume: |
54 |
Issue: |
3 |
Pages: |
806-15 |
|
•
•
•
•
•
|
Publication |
First Author: |
Maekawa T |
Year: |
2008 |
Journal: |
Oncogene |
Title: |
ATF-2 controls transcription of Maspin and GADD45 alpha genes independently from p53 to suppress mammary tumors. |
Volume: |
27 |
Issue: |
8 |
Pages: |
1045-54 |
|
•
•
•
•
•
|
Publication |
First Author: |
Gnanaprakasam JNR |
Year: |
2023 |
Journal: |
Nat Metab |
Title: |
Asparagine restriction enhances CD8(+) T cell metabolic fitness and antitumoral functionality through an NRF2-dependent stress response. |
Volume: |
5 |
Issue: |
8 |
Pages: |
1423-1439 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ochi A |
Year: |
2017 |
Journal: |
Am J Physiol Renal Physiol |
Title: |
MIF-2/D-DT enhances proximal tubular cell regeneration through SLPI- and ATF4-dependent mechanisms. |
Volume: |
313 |
Issue: |
3 |
Pages: |
F767-F780 |
|
•
•
•
•
•
|
Publication |
First Author: |
Dalton RP |
Year: |
2013 |
Journal: |
Cell |
Title: |
Co-opting the unfolded protein response to elicit olfactory receptor feedback. |
Volume: |
155 |
Issue: |
2 |
Pages: |
321-32 |
|
•
•
•
•
•
|
Publication |
First Author: |
Legué E |
Year: |
2019 |
Journal: |
Curr Biol |
Title: |
Tulp3 Is a Ciliary Trafficking Gene that Regulates Polycystic Kidney Disease. |
Volume: |
29 |
Issue: |
5 |
Pages: |
803-812.e5 |
|
•
•
•
•
•
|
Publication |
First Author: |
Nishimori S |
Year: |
2019 |
Journal: |
J Clin Invest |
Title: |
Salt-inducible kinases dictate parathyroid hormone 1 receptor action in bone development and remodeling. |
Volume: |
129 |
Issue: |
12 |
Pages: |
5187-5203 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kenerson HL |
Year: |
2013 |
Journal: |
Gastroenterology |
Title: |
Akt and mTORC1 have different roles during liver tumorigenesis in mice. |
Volume: |
144 |
Issue: |
5 |
Pages: |
1055-65 |
|
•
•
•
•
•
|
Publication |
First Author: |
Assens A |
Year: |
2016 |
Journal: |
Development |
Title: |
Alteration of Nrp1 signaling at different stages of olfactory neuron maturation promotes glomerular shifts along distinct axes in the olfactory bulb. |
Volume: |
143 |
Issue: |
20 |
Pages: |
3817-3825 |
|
•
•
•
•
•
|
Publication |
First Author: |
Login H |
Year: |
2015 |
Journal: |
Brain Struct Funct |
Title: |
Activity-dependent and graded BACE1 expression in the olfactory epithelium is mediated by the retinoic acid metabolizing enzyme CYP26B1. |
Volume: |
220 |
Issue: |
4 |
Pages: |
2143-57 |
|
•
•
•
•
•
|
Publication |
First Author: |
Maurya DK |
Year: |
2017 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Hedgehog signaling regulates ciliary localization of mouse odorant receptors. |
Volume: |
114 |
Issue: |
44 |
Pages: |
E9386-E9394 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kenny TC |
Year: |
2023 |
Journal: |
Cell Metab |
Title: |
Integrative genetic analysis identifies FLVCR1 as a plasma-membrane choline transporter in mammals. |
Volume: |
35 |
Issue: |
6 |
Pages: |
1057-1071.e12 |
|
•
•
•
•
•
|
Publication |
First Author: |
Larhammar M |
Year: |
2017 |
Journal: |
Elife |
Title: |
Dual leucine zipper kinase-dependent PERK activation contributes to neuronal degeneration following insult. |
Volume: |
6 |
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Shim JH |
Year: |
2013 |
Journal: |
J Clin Invest |
Title: |
Schnurri-3 regulates ERK downstream of WNT signaling in osteoblasts. |
Volume: |
123 |
Issue: |
9 |
Pages: |
4010-22 |
|
•
•
•
•
•
|
Publication |
First Author: |
Patel K |
Year: |
2014 |
Journal: |
Nat Commun |
Title: |
The LKB1-salt-inducible kinase pathway functions as a key gluconeogenic suppressor in the liver. |
Volume: |
5 |
|
Pages: |
4535 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mann MJ |
Year: |
2012 |
Journal: |
PLoS One |
Title: |
UPR-induced resistance to etoposide is downstream of PERK and independent of changes in topoisomerase IIα levels. |
Volume: |
7 |
Issue: |
10 |
Pages: |
e47931 |
|
•
•
•
•
•
|
Publication |
First Author: |
Col JA |
Year: |
2007 |
Journal: |
Development |
Title: |
Adenylyl cyclase-dependent axonal targeting in the olfactory system. |
Volume: |
134 |
Issue: |
13 |
Pages: |
2481-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Back SH |
Year: |
2009 |
Journal: |
Cell Metab |
Title: |
Translation attenuation through eIF2alpha phosphorylation prevents oxidative stress and maintains the differentiated state in beta cells. |
Volume: |
10 |
Issue: |
1 |
Pages: |
13-26 |
|
•
•
•
•
•
|
Publication |
First Author: |
Jiang HY |
Year: |
2004 |
Journal: |
Mol Cell Biol |
Title: |
Activating transcription factor 3 is integral to the eukaryotic initiation factor 2 kinase stress response. |
Volume: |
24 |
Issue: |
3 |
Pages: |
1365-77 |
|
•
•
•
•
•
|
Publication |
First Author: |
Frank CL |
Year: |
2010 |
Journal: |
J Biol Chem |
Title: |
Control of activating transcription factor 4 (ATF4) persistence by multisite phosphorylation impacts cell cycle progression and neurogenesis. |
Volume: |
285 |
Issue: |
43 |
Pages: |
33324-37 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yang X |
Year: |
2018 |
Journal: |
Cell Rep |
Title: |
ATF4 Regulates CD4+ T Cell Immune Responses through Metabolic Reprogramming. |
Volume: |
23 |
Issue: |
6 |
Pages: |
1754-1766 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhu K |
Year: |
2013 |
Journal: |
J Bone Miner Res |
Title: |
ATF4 promotes bone angiogenesis by increasing VEGF expression and release in the bone environment. |
Volume: |
28 |
Issue: |
9 |
Pages: |
1870-1884 |
|
•
•
•
•
•
|
Publication |
First Author: |
Montavon T |
Year: |
2012 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Impact of copy number variations (CNVs) on long-range gene regulation at the HoxD locus. |
Volume: |
109 |
Issue: |
50 |
Pages: |
20204-11 |
|
•
•
•
•
•
|
Publication |
First Author: |
Sabapathy K |
Year: |
2004 |
Journal: |
Mol Cell |
Title: |
Distinct roles for JNK1 and JNK2 in regulating JNK activity and c-Jun-dependent cell proliferation. |
Volume: |
15 |
Issue: |
5 |
Pages: |
713-25 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mills JR |
Year: |
2008 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
mTORC1 promotes survival through translational control of Mcl-1. |
Volume: |
105 |
Issue: |
31 |
Pages: |
10853-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lee CH |
Year: |
2020 |
Journal: |
Nat Commun |
Title: |
Primary cilia mediate early life programming of adiposity through lysosomal regulation in the developing mouse hypothalamus. |
Volume: |
11 |
Issue: |
1 |
Pages: |
5772 |
|
•
•
•
•
•
|
Publication |
First Author: |
Borgmann D |
Year: |
2021 |
Journal: |
Cell Metab |
Title: |
Gut-brain communication by distinct sensory neurons differently controls feeding and glucose metabolism. |
Volume: |
33 |
Issue: |
7 |
Pages: |
1466-1482.e7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Miller RA |
Year: |
2011 |
Journal: |
J Clin Invest |
Title: |
Adiponectin suppresses gluconeogenic gene expression in mouse hepatocytes independent of LKB1-AMPK signaling. |
Volume: |
121 |
Issue: |
6 |
Pages: |
2518-28 |
|
•
•
•
•
•
|