| Type |
Details |
Score |
| Publication |
| First Author: |
Wang X |
| Year: |
2004 |
| Journal: |
Nucleic Acids Res |
| Title: |
Involvement of Hus1 in the chain elongation step of DNA replication after exposure to camptothecin or ionizing radiation. |
| Volume: |
32 |
| Issue: |
2 |
| Pages: |
767-75 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Zeng XR |
| Year: |
1994 |
| Journal: |
J Biol Chem |
| Title: |
DNA polymerase delta is involved in the cellular response to UV damage in human cells. |
| Volume: |
269 |
| Issue: |
19 |
| Pages: |
13748-51 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Guo C |
| Year: |
2006 |
| Journal: |
Mol Cell Biol |
| Title: |
Ubiquitin-binding motifs in REV1 protein are required for its role in the tolerance of DNA damage. |
| Volume: |
26 |
| Issue: |
23 |
| Pages: |
8892-900 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Uehara M |
| Year: |
1999 |
| Journal: |
Oral Oncol |
| Title: |
Cell kinetics of mouse tumour subjected to photodynamic therapy--evaluation by proliferating cell nuclear antigen immunohistochemistry. |
| Volume: |
35 |
| Issue: |
1 |
| Pages: |
93-7 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Capanni C |
| Year: |
2008 |
| Journal: |
Exp Cell Res |
| Title: |
Prelamin A is involved in early steps of muscle differentiation. |
| Volume: |
314 |
| Issue: |
20 |
| Pages: |
3628-37 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Watanabe K |
| Year: |
2009 |
| Journal: |
Nucleic Acids Res |
| Title: |
RAD18 promotes DNA double-strand break repair during G1 phase through chromatin retention of 53BP1. |
| Volume: |
37 |
| Issue: |
7 |
| Pages: |
2176-93 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Gao Y |
| Year: |
2016 |
| Journal: |
Nat Commun |
| Title: |
A neomorphic cancer cell-specific role of MAGE-A4 in trans-lesion synthesis. |
| Volume: |
7 |
|
| Pages: |
12105 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Zhou J |
| Year: |
2017 |
| Journal: |
Cell Rep |
| Title: |
NEIL3 Repairs Telomere Damage during S Phase to Secure Chromosome Segregation at Mitosis. |
| Volume: |
20 |
| Issue: |
9 |
| Pages: |
2044-2056 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Qin J |
| Year: |
2018 |
| Journal: |
Biochem Biophys Res Commun |
| Title: |
The cross roles of sphingosine kinase 1/2 and ceramide glucosyltransferase in cell growth and death. |
| Volume: |
500 |
| Issue: |
3 |
| Pages: |
597-602 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Marinho TS |
| Year: |
2020 |
| Journal: |
Mol Cell Endocrinol |
| Title: |
Browning of the subcutaneous adipocytes in diet-induced obese mouse submitted to intermittent fasting. |
| Volume: |
513 |
|
| Pages: |
110872 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Marple T |
| Year: |
2024 |
| Journal: |
Cell Rep |
| Title: |
TREX2 deficiency suppresses spontaneous and genotoxin-associated mutagenesis. |
| Volume: |
43 |
| Issue: |
1 |
| Pages: |
113637 |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein Coding Gene |
| Type: |
protein_coding_gene |
| Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
573
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
280
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
276
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
573
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
92
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
212
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
144
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
73
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
255
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
365
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
64
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
80
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
122
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
276
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
This entry represents the DNA damage checkpoint protein Rad9 and its homologue in budding yeast, Ddc1. Rad9 forms a complex with Hus1 and Rad1 (called 9-1-1 complex). Ddc1 forms a similar complex with Mec1 and Rad17. Structurally, the 9-1-1 / Ddc1-Mec3-Rad17 complex is similar to the PCNA complex, which forms trimeric ring-shaped clamps. The 9-1-1 / Ddc1-Mec3-Rad17 complex plays a role in checkpoint activation that permits DNA-repair pathways to prevent cell cycle progression in response to DNA damage and replication stress [, ].In humans, 9-1-1 binds to TopBP1 and activates the ATR-Chk1 checkpoint pathway []. Besides its function in the 9-1-1 complex, Rad9 can also act as a transcriptional factor and participate in immunoglobulin class switch recombination []. It also shows 3'-5' exonuclease activity []. Aberrant Rad9 expression has been associated with prostate, breast, lung, skin, thyroid, and gastric cancers [].In budding yeast, Ddc1 can activate Mec1 (the principal checkpoint protein kinase, human ATR homologue) in G1 phase. In G2 phase, Ddc1 can either activate Mec1 directly or recruit Dpb11 (the orthologue of human TopBP1) and subsequently activate Mec1 []. Ddc1 does not have DNA exonuclease function [].It is worth noting that the Rad9 proteins referred to in this entry are the mammalian and fission yeast homologues of budding yeast Ddc1. Members of this family do not share the sequence homology another DNA damage-dependent checkpoint protein from budding yeast, confusingly also called Rad9. |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Homologous_superfamily |
| Description: |
DNA replication in eukaryotes results from a highly coordinated interaction between proteins, often as part of protein complexes, and the DNA template. One of the key early steps leading to DNA replication is formation of the pre-replication complex, or pre-RC. The pre-RC is formed by the sequential binding of the origin recognition complex (ORC), Cdc6 and Cdt1 proteins, and the MCM complex. Activation of the pre-RC into the initiation complex (IC) is achieved via the action of S-phase kinases, eventually leading to the loading of the replication machinery.Recently, a novel replication complex, GINS (for Go, Ichi, Nii, and San; five, one, two, and three in Japanese), has been identified [, ]. The precise function of GINS is not known. However, genetic and two-hybrid interactions indicate that it mediates the loading of the enzymatic replication machinery at a step after the action of the S-phase kinases []. Furthermore, GINS may be a part of the replication machinery itself, since it is found associated with replicating DNA [, ]. Electron microscopy of GINS shows that it forms a ring-like structure [], reminiscent of the structure of PCNA [], the DNA polymerase delta replication clamp. This observation, coupled with the observed interactions for GINS, indicates that the complex may represent the replication clamp for DNA polymerase epsilon [].The GINS complex is essential for initiation of DNA replication in Xenopus egg extracts []. This 100kDa stable complex includes Sld5, Psf1, Psf2, and Psf3. Homologues of these components are found also in other eukaryotes. This superfamily represents the Psf3 component. |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
DNA replication in eukaryotes results from a highly coordinated interaction between proteins, often as part of protein complexes, and the DNA template. One of the key early steps leading to DNA replication is formation of the pre-replication complex, or pre-RC. The pre-RC is formed by the sequential binding of the origin recognition complex (ORC), Cdc6 and Cdt1 proteins, and the MCM complex. Activation of the pre-RC into the initiation complex (IC) is achieved via the action of S-phase kinases, eventually leading to the loading of the replication machinery.Recently, a novel replication complex, GINS (for Go, Ichi, Nii, and San; five, one, two, and three in Japanese), has been identified [, ]. The precise function of GINS is not known. However, genetic and two-hybrid interactions indicate that it mediates the loading of the enzymatic replication machinery at a step after the action of the S-phase kinases []. Furthermore, GINS may be a part of the replication machinery itself, since it is found associated with replicating DNA [, ]. Electron microscopy of GINS shows that it forms a ring-like structure [], reminiscent of the structure of PCNA [], the DNA polymerase delta replication clamp. This observation, coupled with the observed interactions for GINS, indicates that the complex may represent the replication clamp for DNA polymerase epsilon [].The GINS complex is essential for initiation of DNA replication in Xenopusegg extracts []. This 100kDa stable complex includes Sld5, Psf1, Psf2, and Psf3. Homologues of these components are found also in other eukaryotes. This family of proteins represents the Psf3 component. |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
DNA replication in eukaryotes results from a highly coordinated interaction between proteins, often as part of protein complexes, and the DNA template. One of the key early steps leading to DNA replication is formation of the prereplication complex, or pre-RC. The pre-RC is formed by the sequential binding of the origin recognition complex (ORC), Cdc6 and Cdt1 proteins, and the MCM complex. Activation of the pre-RC into the initiation complex (IC) is achieved via the action of S-phase kinases, eventually leading to the loading of the replication machinery.Recently, a novel replication complex, GINS (for Go, Ichi, Nii, and San; five, one, two, and three in Japanese), has been identified [, ]. The precise function of GINS is not known. However, genetic and two-hybrid interactions indicate that it mediates the loading of the enzymatic replication machinery at a step after the action of the S-phase kinases []. Furthermore, GINS may be a part of the replication machinery itself, since it is found associated with replicating DNA [, ]. Electron microscopy of GINS shows that it forms a ring-like structure [], reminiscent of the structure of PCNA [], the DNA polymerase delta replication clamp.This observation, coupled with the observed interactions for GINS, indicates that the complex may represent the replication clamp for DNA polymerase epsilon [].The GINS complex is essential for initiation of DNA replication in Xenopus egg extracts []. This 100kDa stable complex includes Sld5, Psf1, Psf2, and Psf3. Homologues of these components are found also in other eukaryotes. This family of proteins represents the Psf2 component. |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Domain |
| Description: |
Chromatin assembly factor 1 (CAF-1) consists of three evolutionary conserved subunits, p150, p60, and p48 (yeast homologues Cac1, cac2 and cac3 respectively), and mediates the assembly of nucleosomes onto newly replicated DNA. The p150 subunit (CAF-1_p150, also known as subunit A) is the core component of the CAF-1 histone chaperone complex, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [, ], being essential for cell viability and efficient DNA replication. The p150 subunit contains the interaction regions with proliferating cell nuclear antigen (PCNA), heterochromatin protein 1 (HP1), the CAF-1 p60 subunit among others proteins []. It is thought that the DNA association with two histone-bound CAF-1 complexes may promote the formation of the (H3-H4)2 tetramer on DNA [].This entry represents the N-terminal region of the CAF-1 subunit p150 that contains one of the PCNA (proliferating cell nuclear antigen) binding sites, designated PIP1 and the heterochromatin protein 1 (HP1) interacting domain MIR []. These domains are dispensable for p150 role in nucleosome assembly and it is thought that this N-terminal region of CAF-1 might act as a regulatory domain contributing to CAF-1-PCNA interaction stability or mediate other functions during DNA repair or heterochromatin maintenance []. |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
DNA replication in eukaryotes results from a highly coordinated interaction between proteins, often as part of protein complexes, and the DNA template. One of the key early steps leading to DNA replication is formation of the prereplication complex, or pre-RC. The pre-RC is formed by the sequential binding of the origin recognition complex (ORC), Cdc6 and Cdt1 proteins, and the MCM complex. Activation of the pre-RC into the initiation complex (IC) is achieved via the action of S-phase kinases, eventually leading to the loading of the replication machinery.Recently, a novel replication complex, GINS (for Go, Ichi, Nii, and San; five, one, two, and three in Japanese), has been identified [, ]. The precise function of GINS is not known. However, genetic and two-hybrid interactions indicate that it mediates the loading of the enzymatic replication machinery at a step after the action of the S-phase kinases []. Furthermore, GINS may be a part of the replication machinery itself, since it is found associated with replicating DNA [, ]. Electron microscopy of GINS shows that it forms a ring-like structure [], reminiscent of the structure of PCNA [], the DNA polymerase delta replication clamp.This observation, coupled with the observed interactions for GINS, indicates that the complex may represent the replication clamp for DNA polymerase epsilon [].This family of proteins represents the PSF1 component (for partner of SLD five) of the GINS complex. |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Kubota Y |
| Year: |
2003 |
| Journal: |
Genes Dev |
| Title: |
A novel ring-like complex of Xenopus proteins essential for the initiation of DNA replication. |
| Volume: |
17 |
| Issue: |
9 |
| Pages: |
1141-52 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Takayama Y |
| Year: |
2003 |
| Journal: |
Genes Dev |
| Title: |
GINS, a novel multiprotein complex required for chromosomal DNA replication in budding yeast. |
| Volume: |
17 |
| Issue: |
9 |
| Pages: |
1153-65 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Uemura T |
| Year: |
2000 |
| Journal: |
Cell Struct Funct |
| Title: |
Temporal and spatial localization of novel nuclear protein NP95 in mitotic and meiotic cells. |
| Volume: |
25 |
| Issue: |
3 |
| Pages: |
149-59 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Haegebarth A |
| Year: |
2006 |
| Journal: |
Mol Cell Biol |
| Title: |
Protein tyrosine kinase 6 negatively regulates growth and promotes enterocyte differentiation in the small intestine. |
| Volume: |
26 |
| Issue: |
13 |
| Pages: |
4949-57 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Coverley D |
| Year: |
2005 |
| Journal: |
J Cell Sci |
| Title: |
Ciz1 promotes mammalian DNA replication. |
| Volume: |
118 |
| Issue: |
Pt 1 |
| Pages: |
101-12 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Liu L |
| Year: |
2003 |
| Journal: |
J Biol Chem |
| Title: |
Identification of a novel protein, PDIP38, that interacts with the p50 subunit of DNA polymerase delta and proliferating cell nuclear antigen. |
| Volume: |
278 |
| Issue: |
12 |
| Pages: |
10041-7 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ducoux M |
| Year: |
2001 |
| Journal: |
J Biol Chem |
| Title: |
Mediation of proliferating cell nuclear antigen (PCNA)-dependent DNA replication through a conserved p21(Cip1)-like PCNA-binding motif present in the third subunit of human DNA polymerase delta. |
| Volume: |
276 |
| Issue: |
52 |
| Pages: |
49258-66 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Negishi M |
| Year: |
2009 |
| Journal: |
Genes Cells |
| Title: |
Dmap1 plays an essential role in the maintenance of genome integrity through the DNA repair process. |
| Volume: |
14 |
| Issue: |
11 |
| Pages: |
1347-57 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Cataldo F |
| Year: |
2013 |
| Journal: |
Mol Cell Biol |
| Title: |
CAPNS1 regulates USP1 stability and maintenance of genome integrity. |
| Volume: |
33 |
| Issue: |
12 |
| Pages: |
2485-96 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Lin Y |
| Year: |
2015 |
| Journal: |
Diabetes |
| Title: |
In vivo pancreatic β-cell-specific expression of antiaging gene Klotho: a novel approach for preserving β-cells in type 2 diabetes. |
| Volume: |
64 |
| Issue: |
4 |
| Pages: |
1444-58 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Howe C |
| Year: |
2018 |
| Journal: |
Biochim Biophys Acta Mol Basis Dis |
| Title: |
Differential expression of tumor-associated genes and altered gut microbiome with decreased Akkermansia muciniphila confer a tumor-preventive microenvironment in intestinal epithelial Pten-deficient mice. |
| Volume: |
1864 |
| Issue: |
12 |
| Pages: |
3746-3758 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Qingjuan L |
| Year: |
2016 |
| Journal: |
Am J Physiol Cell Physiol |
| Title: |
miR-148a-3p overexpression contributes to glomerular cell proliferation by targeting PTEN in lupus nephritis. |
| Volume: |
310 |
| Issue: |
6 |
| Pages: |
C470-8 |
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•
•
•
•
|
| Publication |
| First Author: |
Zeiss CJ |
| Year: |
2004 |
| Journal: |
Invest Ophthalmol Vis Sci |
| Title: |
Proliferation of microglia, but not photoreceptors, in the outer nuclear layer of the rd-1 mouse. |
| Volume: |
45 |
| Issue: |
3 |
| Pages: |
971-6 |
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•
•
•
•
|
| Publication |
| First Author: |
Williams TM |
| Year: |
2004 |
| Journal: |
J Biol Chem |
| Title: |
Combined loss of INK4a and caveolin-1 synergistically enhances cell proliferation and oncogene-induced tumorigenesis: role of INK4a/CAV-1 in mammary epithelial cell hyperplasia. |
| Volume: |
279 |
| Issue: |
23 |
| Pages: |
24745-56 |
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•
•
•
•
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| Publication |
| First Author: |
Gittens JE |
| Year: |
2005 |
| Journal: |
J Cell Sci |
| Title: |
Interplay between paracrine signaling and gap junctional communication in ovarian follicles. |
| Volume: |
118 |
| Issue: |
Pt 1 |
| Pages: |
113-22 |
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•
•
•
•
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| Publication |
| First Author: |
Tsiperson V |
| Year: |
2015 |
| Journal: |
ASN Neuro |
| Title: |
Brain-derived neurotrophic factor deficiency restricts proliferation of oligodendrocyte progenitors following cuprizone-induced demyelination. |
| Volume: |
7 |
| Issue: |
1 |
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•
•
•
•
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| Publication |
| First Author: |
Liu K |
| Year: |
2019 |
| Journal: |
Cancer Lett |
| Title: |
Defective CFTR promotes intestinal proliferation via inhibition of the hedgehog pathway during cystic fibrosis. |
| Volume: |
446 |
|
| Pages: |
15-24 |
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•
•
•
|
| Publication |
| First Author: |
von Montfort C |
| Year: |
2010 |
| Journal: |
Am J Physiol Gastrointest Liver Physiol |
| Title: |
PAI-1 plays a protective role in CCl4-induced hepatic fibrosis in mice: role of hepatocyte division. |
| Volume: |
298 |
| Issue: |
5 |
| Pages: |
G657-66 |
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•
•
•
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| Publication |
| First Author: |
Lin L |
| Year: |
2010 |
| Journal: |
Am J Pathol |
| Title: |
tPA activates LDL receptor-related protein 1-mediated mitogenic signaling involving the p90RSK and GSK3beta pathway. |
| Volume: |
177 |
| Issue: |
4 |
| Pages: |
1687-96 |
|
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•
•
•
•
|
| Publication |
| First Author: |
Fox JG |
| Year: |
1996 |
| Journal: |
Gastroenterology |
| Title: |
Hypertrophic gastropathy in Helicobacter felis-infected wild-type C57BL/6 mice and p53 hemizygous transgenic mice. |
| Volume: |
110 |
| Issue: |
1 |
| Pages: |
155-66 |
|
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•
•
•
•
|
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| First Author: |
Venkatachalam S |
| Year: |
1998 |
| Journal: |
EMBO J |
| Title: |
Retention of wild-type p53 in tumors from p53 heterozygous mice: reduction of p53 dosage can promote cancer formation. |
| Volume: |
17 |
| Issue: |
16 |
| Pages: |
4657-67 |
|
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•
•
•
|
| Publication |
| First Author: |
Uberti D |
| Year: |
2001 |
| Journal: |
Brain Res Mol Brain Res |
| Title: |
p53 is dispensable for apoptosis but controls neurogenesis of mouse dentate gyrus cells following gamma-irradiation. |
| Volume: |
93 |
| Issue: |
1 |
| Pages: |
81-9 |
|
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•
•
•
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| Publication |
| First Author: |
Kip SN |
| Year: |
2005 |
| Journal: |
Circ Res |
| Title: |
[Ca2+]i reduction increases cellular proliferation and apoptosis in vascular smooth muscle cells: relevance to the ADPKD phenotype. |
| Volume: |
96 |
| Issue: |
8 |
| Pages: |
873-80 |
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•
•
•
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| Publication |
| First Author: |
Kase S |
| Year: |
2005 |
| Journal: |
Int J Mol Med |
| Title: |
Phosphorylation of p27(KIP1) in the developing retina and retinoblastoma. |
| Volume: |
16 |
| Issue: |
2 |
| Pages: |
257-62 |
|
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•
•
•
•
|
| Publication |
| First Author: |
Liu R |
| Year: |
2008 |
| Journal: |
Mol Cell Biol |
| Title: |
Laforin negatively regulates cell cycle progression through glycogen synthase kinase 3beta-dependent mechanisms. |
| Volume: |
28 |
| Issue: |
23 |
| Pages: |
7236-44 |
|
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•
•
•
•
|
| Publication |
| First Author: |
Chinzei N |
| Year: |
2015 |
| Journal: |
PLoS One |
| Title: |
P21 deficiency delays regeneration of skeletal muscular tissue. |
| Volume: |
10 |
| Issue: |
5 |
| Pages: |
e0125765 |
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•
•
•
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| First Author: |
Vitiello PF |
| Year: |
2006 |
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