Type |
Details |
Score |
GXD Expression |
Probe: |
MGI:3821218 |
Assay Type: |
RNA in situ |
Annotation Date: |
2012-06-12 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:3599822 |
Pattern: |
Regionally restricted |
Stage: |
TS22 |
Assay Id: |
MGI:5421764 |
Age: |
embryonic day 14.5 |
Image: |
MY255; Specimen C1481 |
|
Specimen Label: |
MY255; Specimen C1481 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3821218 |
Assay Type: |
RNA in situ |
Annotation Date: |
2012-06-12 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:3280922 |
|
Stage: |
TS22 |
Assay Id: |
MGI:5421764 |
Age: |
embryonic day 14.5 |
|
|
Specimen Label: |
MY255; Specimen C1481 |
Detected: |
false |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3821218 |
Assay Type: |
RNA in situ |
Annotation Date: |
2012-06-12 |
Strength: |
Weak |
Sex: |
Not Specified |
Emaps: |
EMAPS:1833322 |
Pattern: |
Regionally restricted |
Stage: |
TS22 |
Assay Id: |
MGI:5421764 |
Age: |
embryonic day 14.5 |
Image: |
MY255; Specimen C1481 |
|
Specimen Label: |
MY255; Specimen C1481 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3821218 |
Assay Type: |
RNA in situ |
Annotation Date: |
2012-06-12 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:3287022 |
Pattern: |
Regionally restricted |
Stage: |
TS22 |
Assay Id: |
MGI:5421764 |
Age: |
embryonic day 14.5 |
Image: |
MY255; Specimen C1481 |
|
Specimen Label: |
MY255; Specimen C1481 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3821218 |
Assay Type: |
RNA in situ |
Annotation Date: |
2012-06-12 |
Strength: |
Weak |
Sex: |
Not Specified |
Emaps: |
EMAPS:1752522 |
Pattern: |
Regionally restricted |
Stage: |
TS22 |
Assay Id: |
MGI:5421764 |
Age: |
embryonic day 14.5 |
Image: |
MY255; Specimen C1481 |
|
Specimen Label: |
MY255; Specimen C1481 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6860346 |
Assay Type: |
RNA in situ |
Annotation Date: |
2022-01-27 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1752528 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6860350 |
Age: |
postnatal day 4 |
|
|
Specimen Label: |
P4 (medial) |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6860346 |
Assay Type: |
RNA in situ |
Annotation Date: |
2022-01-27 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1752528 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6860350 |
Age: |
postnatal day 4 |
|
|
Specimen Label: |
P4 (lateral) |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6860346 |
Assay Type: |
RNA in situ |
Annotation Date: |
2022-01-27 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:3581725 |
Pattern: |
Not Specified |
Stage: |
TS25 |
Assay Id: |
MGI:6860350 |
Age: |
embryonic day 17.0 |
|
|
Specimen Label: |
E17 |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6860346 |
Assay Type: |
RNA in situ |
Annotation Date: |
2022-01-27 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:3581728 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6860350 |
Age: |
postnatal day 4 |
|
|
Specimen Label: |
P4 (medial) |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6860346 |
Assay Type: |
RNA in situ |
Annotation Date: |
2022-01-27 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:3581728 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6860350 |
Age: |
postnatal day 4 |
|
|
Specimen Label: |
P4 (lateral) |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3821218 |
Assay Type: |
RNA in situ |
Annotation Date: |
2012-06-12 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1821522 |
Pattern: |
Regionally restricted |
Stage: |
TS22 |
Assay Id: |
MGI:5421764 |
Age: |
embryonic day 14.5 |
Image: |
MY255; Specimen C1481 |
|
Specimen Label: |
MY255; Specimen C1481 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3821218 |
Assay Type: |
RNA in situ |
Annotation Date: |
2012-06-12 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:3557722 |
|
Stage: |
TS22 |
Assay Id: |
MGI:5421764 |
Age: |
embryonic day 14.5 |
|
|
Specimen Label: |
MY255; Specimen C1481 |
Detected: |
false |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3821218 |
Assay Type: |
RNA in situ |
Annotation Date: |
2012-06-12 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1702122 |
Pattern: |
Regionally restricted |
Stage: |
TS22 |
Assay Id: |
MGI:5421764 |
Age: |
embryonic day 14.5 |
Image: |
MY255; Specimen C1481 |
|
Specimen Label: |
MY255; Specimen C1481 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3821218 |
Assay Type: |
RNA in situ |
Annotation Date: |
2012-06-12 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1756322 |
Pattern: |
Regionally restricted |
Stage: |
TS22 |
Assay Id: |
MGI:5421764 |
Age: |
embryonic day 14.5 |
Image: |
MY255; Specimen C1481 |
|
Specimen Label: |
MY255; Specimen C1481 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6860346 |
Assay Type: |
RNA in situ |
Annotation Date: |
2022-01-27 |
Strength: |
Weak |
Sex: |
Not Specified |
Emaps: |
EMAPS:1756328 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6860350 |
Age: |
postnatal day 4 |
|
|
Specimen Label: |
P4 (medial) |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3821218 |
Assay Type: |
RNA in situ |
Annotation Date: |
2012-06-12 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1668822 |
Pattern: |
Regionally restricted |
Stage: |
TS22 |
Assay Id: |
MGI:5421764 |
Age: |
embryonic day 14.5 |
Image: |
MY255; Specimen C1481 |
|
Specimen Label: |
MY255; Specimen C1481 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3821218 |
Assay Type: |
RNA in situ |
Annotation Date: |
2012-06-12 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757722 |
Pattern: |
Regionally restricted |
Stage: |
TS22 |
Assay Id: |
MGI:5421764 |
Age: |
embryonic day 14.5 |
Image: |
MY255; Specimen C1481 |
|
Specimen Label: |
MY255; Specimen C1481 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3821218 |
Assay Type: |
RNA in situ |
Annotation Date: |
2012-06-12 |
Strength: |
Moderate |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757522 |
Pattern: |
Regionally restricted |
Stage: |
TS22 |
Assay Id: |
MGI:5421764 |
Age: |
embryonic day 14.5 |
Image: |
MY255; Specimen C1481 |
|
Specimen Label: |
MY255; Specimen C1481 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3821218 |
Assay Type: |
RNA in situ |
Annotation Date: |
2012-06-12 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1738322 |
Pattern: |
Regionally restricted |
Stage: |
TS22 |
Assay Id: |
MGI:5421764 |
Age: |
embryonic day 14.5 |
Image: |
MY255; Specimen C1481 |
|
Specimen Label: |
MY255; Specimen C1481 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3821218 |
Assay Type: |
RNA in situ |
Annotation Date: |
2012-06-12 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:1802422 |
|
Stage: |
TS22 |
Assay Id: |
MGI:5421764 |
Age: |
embryonic day 14.5 |
|
|
Specimen Label: |
MY255; Specimen C1481 |
Detected: |
false |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5001062 |
Assay Type: |
RNA in situ |
Annotation Date: |
2014-02-07 |
Strength: |
Absent |
Sex: |
Female |
Emaps: |
EMAPS:2875323 |
|
Stage: |
TS23 |
Assay Id: |
MGI:5541619 |
Age: |
embryonic day 15.5 |
Image: |
GUDMAP:13536 |
|
Specimen Label: |
GUDMAP:13536 |
Detected: |
false |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5001062 |
Assay Type: |
RNA in situ |
Annotation Date: |
2014-02-07 |
Strength: |
Absent |
Sex: |
Female |
Emaps: |
EMAPS:2860123 |
|
Stage: |
TS23 |
Assay Id: |
MGI:5541619 |
Age: |
embryonic day 15.5 |
Image: |
GUDMAP:13536 |
|
Specimen Label: |
GUDMAP:13536 |
Detected: |
false |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5001062 |
Assay Type: |
RNA in situ |
Annotation Date: |
2014-02-07 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:2860127 |
|
Stage: |
TS27 |
Assay Id: |
MGI:5541619 |
Age: |
postnatal day 2 |
Image: |
GUDMAP:13537 |
|
Specimen Label: |
GUDMAP:13537 |
Detected: |
false |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3821218 |
Assay Type: |
RNA in situ |
Annotation Date: |
2012-06-12 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:1768022 |
|
Stage: |
TS22 |
Assay Id: |
MGI:5421764 |
Age: |
embryonic day 14.5 |
|
Note: |
Expression was not detected in the skull (base and vault). |
Specimen Label: |
MY255; Specimen C1481 |
Detected: |
false |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3821218 |
Assay Type: |
RNA in situ |
Annotation Date: |
2012-06-12 |
Strength: |
Weak |
Sex: |
Not Specified |
Emaps: |
EMAPS:2672022 |
Pattern: |
Regionally restricted |
Stage: |
TS22 |
Assay Id: |
MGI:5421764 |
Age: |
embryonic day 14.5 |
Image: |
MY255; Specimen C1481 |
Note: |
Expression was weak in whisker follicle. |
Specimen Label: |
MY255; Specimen C1481 |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6860346 |
Assay Type: |
RNA in situ |
Annotation Date: |
2022-01-27 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1881228 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6860350 |
Age: |
postnatal day 4 |
|
|
Specimen Label: |
P4 (medial) |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6860346 |
Assay Type: |
RNA in situ |
Annotation Date: |
2022-01-27 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1881228 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6860350 |
Age: |
postnatal day 4 |
|
|
Specimen Label: |
P4 (lateral) |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6860346 |
Assay Type: |
RNA in situ |
Annotation Date: |
2022-01-27 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3561128 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6860350 |
Age: |
postnatal day 4 |
|
|
Specimen Label: |
P4 (medial) |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6860346 |
Assay Type: |
RNA in situ |
Annotation Date: |
2022-01-27 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3817528 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:6860350 |
Age: |
postnatal day 4 |
|
|
Specimen Label: |
P4 (medial) |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
Publication |
First Author: |
Choi DK |
Year: |
2000 |
Journal: |
GenBank Submission |
Title: |
Mus musculus aspartyl protease 1 mRNA, complete cds |
|
|
Pages: |
AF216310 |
|
•
•
•
•
•
|
Publication |
First Author: |
Sala Frigerio C |
Year: |
2010 |
Journal: |
FEBS J |
Title: |
beta-Secretase cleavage is not required for generation of the intracellular C-terminal domain of the amyloid precursor family of proteins. |
Volume: |
277 |
Issue: |
6 |
Pages: |
1503-18 |
|
•
•
•
•
•
|
UniProt Feature |
Begin: |
125 |
Description: |
Cleavage by BACE2 |
Type: |
site |
End: |
126 |
|
•
•
•
•
•
|
Publication |
First Author: |
Willem M |
Year: |
2006 |
Journal: |
Science |
Title: |
Control of peripheral nerve myelination by the beta-secretase BACE1. |
Volume: |
314 |
Issue: |
5799 |
Pages: |
664-6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chen H |
Year: |
2012 |
Journal: |
PLoS One |
Title: |
Identification of novel markers of mouse fetal ovary development. |
Volume: |
7 |
Issue: |
7 |
Pages: |
e41683 |
|
•
•
•
•
•
|
Publication |
First Author: |
Angueira AR |
Year: |
2021 |
Journal: |
Nat Metab |
Title: |
Defining the lineage of thermogenic perivascular adipose tissue. |
Volume: |
3 |
Issue: |
4 |
Pages: |
469-484 |
|
•
•
•
•
•
|
Publication |
First Author: |
Pletcher MT |
Year: |
2001 |
Journal: |
Genomics |
Title: |
Use of comparative physical and sequence mapping to annotate mouse chromosome 16 and human chromosome 21. |
Volume: |
74 |
Issue: |
1 |
Pages: |
45-54 |
|
•
•
•
•
•
|
Publication |
First Author: |
Brunskill EW |
Year: |
2008 |
Journal: |
Dev Cell |
Title: |
Atlas of gene expression in the developing kidney at microanatomic resolution. |
Volume: |
15 |
Issue: |
5 |
Pages: |
781-91 |
|
•
•
•
•
•
|
Publication |
First Author: |
Gitton Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
A gene expression map of human chromosome 21 orthologues in the mouse. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
586-90 |
|
•
•
•
•
•
|
Publication |
First Author: |
Reymond A |
Year: |
2002 |
Journal: |
Nature |
Title: |
Human chromosome 21 gene expression atlas in the mouse. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
582-6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shanghai Model Organisms Center |
Year: |
2017 |
Journal: |
MGI Direct Data Submission |
Title: |
Information obtained from the Shanghai Model Organisms Center (SMOC), Shanghai, China |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
The RIKEN BioResource Center |
Year: |
2006 |
Journal: |
Unpublished |
Title: |
Information obtained from The RIKEN BioResource Center |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Hoffman BG |
Year: |
2008 |
Journal: |
Genome Biol |
Title: |
Identification of transcripts with enriched expression in the developing and adult pancreas. |
Volume: |
9 |
Issue: |
6 |
Pages: |
R99 |
|
•
•
•
•
•
|
Publication |
First Author: |
NIH Mouse Knockout Inventory |
Year: |
2004 |
Journal: |
MGI Direct Data Submission |
Title: |
Information obtained from the NIH Mouse Knockout Inventory |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information Editorial Staff Collaboration |
Year: |
2001 |
|
Title: |
LocusLink Collaboration |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
FANTOM2 Data Curation in Mouse Genome Informatics |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations for FANTOM2 data |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Visel A |
Year: |
2004 |
Journal: |
Nucleic Acids Res |
Title: |
GenePaint.org: an atlas of gene expression patterns in the mouse embryo. |
Volume: |
32 |
Issue: |
Database issue |
Pages: |
D552-6 |
|
•
•
•
•
•
|
Publication |
First Author: |
International Knockout Mouse Consortium |
Year: |
2014 |
Journal: |
Database Download |
Title: |
MGI download of modified allele data from IKMC and creation of new knockout alleles |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Lennon G |
Year: |
1999 |
Journal: |
Database Download |
Title: |
WashU-HHMI Mouse EST Project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
International Mouse Strain Resource |
Year: |
2014 |
Journal: |
Database Download |
Title: |
MGI download of germline transmission data for alleles from IMSR strain data |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Wellcome Trust Sanger Institute |
Year: |
2010 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the EUCOMM and EUCOMMTools projects by the Wellcome Trust Sanger Institute |
|
|
|
|
•
•
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Publication |
First Author: |
GUDMAP Consortium |
Year: |
2004 |
Journal: |
www.gudmap.org |
Title: |
GUDMAP: the GenitoUrinary Development Molecular Anatomy Project |
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Publication |
First Author: |
Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC) |
Year: |
2014 |
Journal: |
Database Release |
Title: |
Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database |
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Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2014 |
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Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-rat orthologs |
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Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
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Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt |
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Publication |
First Author: |
Magdaleno S |
Year: |
2006 |
Journal: |
PLoS Biol |
Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
Volume: |
4 |
Issue: |
4 |
Pages: |
e86 |
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Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
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Publication |
First Author: |
Kawai J |
Year: |
2001 |
Journal: |
Nature |
Title: |
Functional annotation of a full-length mouse cDNA collection. |
Volume: |
409 |
Issue: |
6821 |
Pages: |
685-90 |
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Publication |
First Author: |
Adams DJ |
Year: |
2024 |
Journal: |
Nature |
Title: |
Genetic determinants of micronucleus formation in vivo. |
Volume: |
627 |
Issue: |
8002 |
Pages: |
130-136 |
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Publication |
First Author: |
MGD Nomenclature Committee |
Year: |
1995 |
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Title: |
Nomenclature Committee Use |
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Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
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Title: |
GemPharmatech Website. |
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Publication |
First Author: |
Skarnes WC |
Year: |
2011 |
Journal: |
Nature |
Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
Volume: |
474 |
Issue: |
7351 |
Pages: |
337-42 |
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Publication |
First Author: |
Cyagen Biosciences Inc. |
Year: |
2022 |
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Title: |
Cyagen Biosciences Website. |
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Publication |
First Author: |
AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators |
Year: |
2011 |
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Title: |
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity |
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Publication |
First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
Year: |
2004 |
Journal: |
Database Release |
Title: |
Mouse T31 Radiation Hybrid Data Load |
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Publication |
First Author: |
Okazaki Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
563-73 |
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Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
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Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
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Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
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Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
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Title: |
Annotation inferences using phylogenetic trees |
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Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
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Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
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Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
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Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
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Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
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Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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Allele |
Name: |
beta-site APP-cleaving enzyme 2; endonuclease-mediated mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Null/knockout |
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Publication |
First Author: |
Rulifson IC |
Year: |
2016 |
Journal: |
PLoS One |
Title: |
Identification of Human Islet Amyloid Polypeptide as a BACE2 Substrate. |
Volume: |
11 |
Issue: |
2 |
Pages: |
e0147254 |
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Strain |
Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
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Protein Domain |
Type: |
Family |
Description: |
One of the major neuropathological hallmarks of Alzheimer's disease (AD)is the progressive formation in the brain of insoluble amyloid plaques and vascular deposits consisting of beta-amyloid protein (beta-APP) [].Production of beta-APP requires proteolytic cleavage of the large type-1 transmembrane (TM) protein amyloid precursor protein (APP) []. This processis performed by a variety of enzymes known as secretases. To initiate beta-APP formation, beta-secretase cleaves APP to release a soluble N-terminal fragment (APPsBeta) and a C-terminal fragment that remains membrane bound. This fragment is subsequently cleaved by gamma-secretase to liberate beta-APP.Several independent studies identified a novel TM aspartic protease as themajor beta-secretase [, , ]. This protein, termed beta-site APP cleavingenzyme 1 (BACE1), shares 64% amino acid sequence similarity with a secondenzyme, termed BACE2. Together, BACE1 and BACE2 define a novel family of aspartyl proteases []. Both enzymes share significant sequence similaritywith other members of the pepsin family of aspartyl proteases and contain the two characteristic D(T/S)G(T/S) motifs that form the catalytic site.However, by contrast with other aspartyl proteases, BACE1 and BACE2 aretype I TM proteins. Each protein comprises a large lumenal domain containingthe active centre, a single TM domain and a small cytoplasmic tail. |
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Publication |
First Author: |
Azkona G |
Year: |
2010 |
Journal: |
Genes Brain Behav |
Title: |
Characterization of a mouse model overexpressing beta-site APP-cleaving enzyme 2 reveals a new role for BACE2. |
Volume: |
9 |
Issue: |
2 |
Pages: |
160-72 |
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Publication |
First Author: |
Ma Z |
Year: |
2016 |
Journal: |
Sci Rep |
Title: |
Orexin signaling regulates both the hippocampal clock and the circadian oscillation of Alzheimer's disease-risk genes. |
Volume: |
6 |
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Pages: |
36035 |
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•
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•
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Publication |
First Author: |
Kulas JA |
Year: |
2017 |
Journal: |
J Endocrinol |
Title: |
Amyloid precursor protein in pancreatic islets. |
Volume: |
235 |
Issue: |
1 |
Pages: |
49-67 |
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•
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•
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Publication |
First Author: |
Luo Y |
Year: |
2003 |
Journal: |
Neurobiol Dis |
Title: |
BACE1 (beta-secretase) knockout mice do not acquire compensatory gene expression changes or develop neural lesions over time. |
Volume: |
14 |
Issue: |
1 |
Pages: |
81-8 |
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•
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Publication |
First Author: |
Laird FM |
Year: |
2005 |
Journal: |
J Neurosci |
Title: |
BACE1, a major determinant of selective vulnerability of the brain to amyloid-beta amyloidogenesis, is essential for cognitive, emotional, and synaptic functions. |
Volume: |
25 |
Issue: |
50 |
Pages: |
11693-709 |
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•
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•
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Publication |
First Author: |
Heindl M |
Year: |
2015 |
Journal: |
PLoS One |
Title: |
Loss of Bace1 in mice does not alter the severity of caerulein induced pancreatitis. |
Volume: |
10 |
Issue: |
5 |
Pages: |
e0125556 |
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Publication |
First Author: |
Pratsch K |
Year: |
2023 |
Journal: |
Int J Mol Sci |
Title: |
New Highly Selective BACE1 Inhibitors and Their Effects on Dendritic Spine Density In Vivo. |
Volume: |
24 |
Issue: |
15 |
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•
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•
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Publication |
First Author: |
Sinha S |
Year: |
1999 |
Journal: |
Nature |
Title: |
Purification and cloning of amyloid precursor protein beta-secretase from human brain. |
Volume: |
402 |
Issue: |
6761 |
Pages: |
537-40 |
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Protein Domain |
Type: |
Domain |
Description: |
This entry includes the peptidase domain of aspartic endopeptidases known as memapsins. In humans there are two enzymes, memapsin-1 (also known as BACE2 or beta-site of APP cleaving enzyme 1; MEROPS identifier A01.041) and memapsin-2 (BACE1; MEROPS identifier A01.004).Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases (peptidase family A1) [, ].Aspartyl proteases (APs), also known as acid proteases, ([intenz:3.4.23.-]) are a widely distributed family of proteolytic enzymes [, , , , , ]known to exist in vertebrates, fungi, plants, retroviruses and some plant viruses. APs use an Asp dyad to hydrolyze peptide bonds.APs found in eukaryotic cells are alpha/beta monomers composed of two asymmetric lobes ("bilobed"). Each of the lobes provides a catalytic Asp residue, positioned within the hallmark motif Asp-Thr/Ser-Gly, to the active site. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 andP1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbour hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Eukaryotic APs form peptidase family A1 of clan AA. |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
501
 |
Fragment?: |
false |
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•
•
•
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
501
 |
Fragment?: |
false |
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•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
501
 |
Fragment?: |
false |
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•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
467
 |
Fragment?: |
false |
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•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
360
 |
Fragment?: |
true |
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•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
373
 |
Fragment?: |
true |
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•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
267
 |
Fragment?: |
false |
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•
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