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Search results 301 to 376 out of 376 for Hamp

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Type Details Score
GXD Expression
GXD Expression
   
Probe: MGI:2676224
Assay Type: Northern blot
Annotation Date: 2003-10-08
Strength: Absent
Sex: Not Specified
Emaps: EMAPS:1684625
Stage: TS25
Assay Id: MGI:2676235
Age: embryonic day 17.5
Image: 4
Specimen Label: E17.5
Detected: false
Specimen Num: 4
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GXD Expression
GXD Expression
   
Probe: MGI:2676224
Assay Type: Northern blot
Annotation Date: 2003-10-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684627
Stage: TS27
Assay Id: MGI:2676235
Age: postnatal newborn
Image: 4
Specimen Label: B
Detected: true
Specimen Num: 5
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GXD Expression
GXD Expression
   
Probe: MGI:2676224
Assay Type: Northern blot
Annotation Date: 2003-10-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684627
Stage: TS27
Assay Id: MGI:2676235
Age: postnatal newborn
Image: 4
Specimen Label: B
Detected: true
Specimen Num: 6
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GXD Expression
GXD Expression
   
Probe: MGI:2676224
Assay Type: Northern blot
Annotation Date: 2003-10-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684627
Stage: TS27
Assay Id: MGI:2676235
Age: postnatal day 1
Image: 4
Specimen Label: 1
Detected: true
Specimen Num: 7
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GXD Expression
GXD Expression
   
Probe: MGI:2676224
Assay Type: Northern blot
Annotation Date: 2003-10-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684627
Stage: TS27
Assay Id: MGI:2676235
Age: postnatal day 1
Image: 4
Specimen Label: 1
Detected: true
Specimen Num: 8
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GXD Expression
GXD Expression
   
Probe: MGI:2676224
Assay Type: Northern blot
Annotation Date: 2003-10-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684627
Stage: TS27
Assay Id: MGI:2676235
Age: postnatal day 2
Image: 4
Specimen Label: 2
Detected: true
Specimen Num: 9
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GXD Expression
GXD Expression
   
Probe: MGI:2676224
Assay Type: Northern blot
Annotation Date: 2003-10-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684627
Stage: TS27
Assay Id: MGI:2676235
Age: postnatal day 2
Image: 4
Specimen Label: 2
Detected: true
Specimen Num: 10
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GXD Expression
GXD Expression
   
Probe: MGI:2676224
Assay Type: Northern blot
Annotation Date: 2003-10-08
Strength: Absent
Sex: Not Specified
Emaps: EMAPS:1684628
Stage: TS28
Assay Id: MGI:2676235
Age: postnatal day 7
Image: 4
Specimen Label: 7
Detected: false
Specimen Num: 11
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GXD Expression
GXD Expression
   
Probe: MGI:2676224
Assay Type: Northern blot
Annotation Date: 2003-10-08
Strength: Absent
Sex: Not Specified
Emaps: EMAPS:1684628
Stage: TS28
Assay Id: MGI:2676235
Age: postnatal day 14
Image: 4
Specimen Label: 14
Detected: false
Specimen Num: 12
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GXD Expression
GXD Expression
   
Probe: MGI:2676224
Assay Type: Northern blot
Annotation Date: 2003-10-08
Strength: Absent
Sex: Not Specified
Emaps: EMAPS:1684628
Stage: TS28
Assay Id: MGI:2676235
Age: postnatal day 21
Image: 4
Specimen Label: 21
Detected: false
Specimen Num: 13
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GXD Expression
GXD Expression
   
Probe: MGI:2676224
Assay Type: Northern blot
Annotation Date: 2003-10-08
Strength: Absent
Sex: Not Specified
Emaps: EMAPS:1684628
Stage: TS28
Assay Id: MGI:2676235
Age: postnatal day 28
Image: 4
Specimen Label: 28
Detected: false
Specimen Num: 14
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GXD Expression
GXD Expression
   
Probe: MGI:2676224
Assay Type: Northern blot
Annotation Date: 2003-10-08
Strength: Absent
Sex: Not Specified
Emaps: EMAPS:1684628
Stage: TS28
Assay Id: MGI:2676235
Age: postnatal day 42
Image: 4
Specimen Label: 42
Detected: false
Specimen Num: 15
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GXD Expression
GXD Expression
   
Probe: MGI:2676224
Assay Type: Northern blot
Annotation Date: 2003-10-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684628
Stage: TS28
Assay Id: MGI:2676235
Age: postnatal day 56
Image: 4
Specimen Label: 56
Detected: true
Specimen Num: 16
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GXD Expression
GXD Expression
     
Probe: MGI:2676268
Assay Type: RT-PCR
Annotation Date: 2003-10-08
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684628
Stage: TS28
Assay Id: MGI:2676271
Age: postnatal adult
Specimen Label: Houston KO
Detected: true
Specimen Num: 1
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GXD Expression
GXD Expression
   
Probe: MGI:6382942
Assay Type: RT-PCR
Annotation Date: 2020-01-03
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684628
Stage: TS28
Assay Id: MGI:6383130
Age: postnatal week 1
Image: 5
Specimen Label: 1w Control
Detected: true
Specimen Num: 1
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GXD Expression
GXD Expression
   
Probe: MGI:6382942
Assay Type: RT-PCR
Annotation Date: 2020-01-03
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684628
Stage: TS28
Assay Id: MGI:6383130
Age: postnatal week 1
Image: 5
Specimen Label: 1w Cnot3LKO
Detected: true
Specimen Num: 2
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GXD Expression
GXD Expression
   
Probe: MGI:6382942
Assay Type: RT-PCR
Annotation Date: 2020-01-03
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684628
Stage: TS28
Assay Id: MGI:6383130
Age: postnatal week 4
Image: 5
Specimen Label: 4w Control
Detected: true
Specimen Num: 3
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GXD Expression
GXD Expression
   
Probe: MGI:6382942
Assay Type: RT-PCR
Annotation Date: 2020-01-03
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684628
Stage: TS28
Assay Id: MGI:6383130
Age: postnatal week 4
Image: 5
Specimen Label: 4w Cnot3LKO
Detected: true
Specimen Num: 4
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GXD Expression
GXD Expression
   
Probe: MGI:7491853
Assay Type: RT-PCR
Annotation Date: 2023-06-22
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684622
Stage: TS22
Assay Id: MGI:7491975
Age: embryonic day 14.5
Image: 3
Specimen Label: GD14
Detected: true
Specimen Num: 1
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GXD Expression
GXD Expression
   
Probe: MGI:7491853
Assay Type: RT-PCR
Annotation Date: 2023-06-22
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684625
Stage: TS25
Assay Id: MGI:7491975
Age: embryonic day 17.5
Image: 3
Specimen Label: GD17
Detected: true
Specimen Num: 2
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GXD Expression
GXD Expression
   
Probe: MGI:7491853
Assay Type: RT-PCR
Annotation Date: 2023-06-22
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684627
Stage: TS27
Assay Id: MGI:7491975
Age: postnatal day 1
Image: 3
Specimen Label: PND1
Detected: true
Specimen Num: 3
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GXD Expression
GXD Expression
   
Probe: MGI:7491853
Assay Type: RT-PCR
Annotation Date: 2023-06-22
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684628
Stage: TS28
Assay Id: MGI:7491975
Age: postnatal day 7
Image: 3
Specimen Label: PND7
Detected: true
Specimen Num: 4
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GXD Expression
GXD Expression
   
Probe: MGI:7491853
Assay Type: RT-PCR
Annotation Date: 2023-06-22
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684628
Stage: TS28
Assay Id: MGI:7491975
Age: postnatal day 14
Image: 3
Specimen Label: PND14
Detected: true
Specimen Num: 5
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GXD Expression
GXD Expression
   
Probe: MGI:7491853
Assay Type: RT-PCR
Annotation Date: 2023-06-22
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684628
Stage: TS28
Assay Id: MGI:7491975
Age: postnatal day 21
Image: 3
Specimen Label: PND21
Detected: true
Specimen Num: 6
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GXD Expression
GXD Expression
   
Probe: MGI:7491853
Assay Type: RT-PCR
Annotation Date: 2023-06-22
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1684628
Stage: TS28
Assay Id: MGI:7491975
Age: postnatal day 28
Image: 3
Specimen Label: PND28
Detected: true
Specimen Num: 7
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GXD Expression
GXD Expression
   
Probe: MGI:7491853
Assay Type: RT-PCR
Annotation Date: 2023-06-22
Strength: Present
Sex: Female
Emaps: EMAPS:1684628
Stage: TS28
Assay Id: MGI:7491975
Age: postnatal adult
Image: 3
Specimen Label: ML
Detected: true
Specimen Num: 8
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Publication
23524968 | J:197624
First Author: Guo S
Year: 2013
Journal: J Clin Invest
Title: Reducing TMPRSS6 ameliorates hemochromatosis and β-thalassemia in mice.
Volume: 123
Issue: 4
Pages: 1531-41
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Publication
33822774 | J:312308
 
First Author: Matte A
Year: 2021
Journal: J Clin Invest
Title: The pyruvate kinase activator mitapivat reduces hemolysis and improves anemia in a β-thalassemia mouse model.
Volume: 131
Issue: 10
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Publication
16418170 | J:110585
First Author: Mok H
Year: 2006
Journal: J Biol Chem
Title: The molecular circuitry regulating the switch between iron deficiency and overload in mice.
Volume: 281
Issue: 12
Pages: 7946-51
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Publication
39820815 | J:361449
First Author: Yilmaz D
Year: 2025
Journal: Sci Rep
Title: Iron metabolism in a mouse model of hepatocellular carcinoma.
Volume: 15
Issue: 1
Pages: 2180
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Publication
31270208 | J:281312
First Author: Xiaoli AM
Year: 2019
Journal: J Biol Chem
Title: Lipogenic SREBP-1a/c transcription factors activate expression of the iron regulator hepcidin, revealing cross-talk between lipid and iron metabolisms.
Volume: 294
Issue: 34
Pages: 12743-12753
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Publication
26972048 | J:258400
First Author: Marques L
Year: 2016
Journal: Biochim Biophys Acta
Title: Iron gene expression profile in atherogenic Mox macrophages.
Volume: 1862
Issue: 6
Pages: 1137-46
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Publication
36351237 | J:340933
First Author: Charlebois E
Year: 2023
Journal: Blood
Title: Liver sinusoidal endothelial cells induce BMP6 expression in response to non-transferrin-bound iron.
Volume: 141
Issue: 3
Pages: 271-284
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Publication
21364282 | J:172025
First Author: Castoldi M
Year: 2011
Journal: J Clin Invest
Title: The liver-specific microRNA miR-122 controls systemic iron homeostasis in mice.
Volume: 121
Issue: 4
Pages: 1386-96
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Publication
16306392 | -
 
First Author: Ulrich LE
Year: 2005
Journal: Bioinformatics
Title: Four-helix bundle: a ubiquitous sensory module in prokaryotic signal transduction.
Volume: 21 Suppl 3
Pages: iii45-8
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Publication
15569936 | -
First Author: Chan C
Year: 2004
Journal: Proc Natl Acad Sci U S A
Title: Structural basis of activity and allosteric control of diguanylate cyclase.
Volume: 101
Issue: 49
Pages: 17084-9
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Publication
22629388 | J:187222
First Author: Krijt J
Year: 2012
Journal: PLoS One
Title: Effect of iron overload and iron deficiency on liver hemojuvelin protein.
Volume: 7
Issue: 5
Pages: e37391
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Publication
29927322 | J:361251
First Author: Frýdlová J
Year: 2018
Journal: Am J Physiol Gastrointest Liver Physiol
Title: Liver HFE protein content is posttranscriptionally decreased in iron-deficient mice and rats.
Volume: 315
Issue: 4
Pages: G560-G568
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Publication
1660187 | -
First Author: Milburn MV
Year: 1991
Journal: Science
Title: Three-dimensional structures of the ligand-binding domain of the bacterial aspartate receptor with and without a ligand.
Volume: 254
Issue: 5036
Pages: 1342-7
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Publication
27292793 | -
First Author: Mise T
Year: 2016
Journal: Biochemistry
Title: Structural Analysis of the Ligand-Binding Domain of the Aspartate Receptor Tar from Escherichia coli.
Volume: 55
Issue: 26
Pages: 3708-13
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Publication
21689529 | -
First Author: Park H
Year: 2011
Journal: Biophys J
Title: Transmembrane signaling of chemotaxis receptor tar: insights from molecular dynamics simulation studies.
Volume: 100
Issue: 12
Pages: 2955-63
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Protein Domain
IPR003122 | Tar_rcpt_lig-bd
Type: Domain
Description: Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors, such as E.coli Tar (taxis to aspartate and repellents), which is a receptor for the attractant L-aspartate [, ]. It is a homodimeric receptor that contains an N-terminal periplasmic ligand binding domain, a transmembrane region, a HAMP domain and a C-terminal cytosolic signaling domain [].
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Protein Domain
IPR035440 | 4HB_MCP_dom_sf
Type: Homologous_superfamily
Description: This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues.
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Publication
11119645 | -
First Author: Pei J
Year: 2001
Journal: Proteins
Title: GGDEF domain is homologous to adenylyl cyclase.
Volume: 42
Issue: 2
Pages: 210-6
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Publication
11682196 | -
First Author: Ausmees N
Year: 2001
Journal: FEMS Microbiol Lett
Title: Genetic data indicate that proteins containing the GGDEF domain possess diguanylate cyclase activity.
Volume: 204
Issue: 1
Pages: 163-7
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Protein Domain
IPR014302 | Sig_transdc_His_kinase_TorS
Type: Family
Description: Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK.A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ].Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain.This entry represents TorS proteins, which are part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (), HAMP (), phosphoacceptor (), and phosphotransfer () domains and a response regulator receiver domain ().
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Publication
16359703 | -
First Author: Derr P
Year: 2006
Journal: J Mol Biol
Title: Changing the specificity of a bacterial chemoreceptor.
Volume: 355
Issue: 5
Pages: 923-32
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Publication
17299051 | -
First Author: Alexander RP
Year: 2007
Journal: Proc Natl Acad Sci U S A
Title: Evolutionary genomics reveals conserved structural determinants of signaling and adaptation in microbial chemoreceptors.
Volume: 104
Issue: 8
Pages: 2885-90
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Publication
11557134 | -
First Author: Galperin MY
Year: 2001
Journal: FEMS Microbiol Lett
Title: Novel domains of the prokaryotic two-component signal transduction systems.
Volume: 203
Issue: 1
Pages: 11-21
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Publication
37453365 | J:338630
 
First Author: Rong R
Year: 2023
Journal: EBioMedicine
Title: Image-based quantification of histological features as a function of spatial location using the Tissue Positioning System.
Volume: 94
Pages: 104698
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Publication
33632817 | J:304477
 
First Author: Wei Y
Year: 2021
Journal: Science
Title: Liver homeostasis is maintained by midlobular zone 2 hepatocytes.
Volume: 371
Issue: 6532
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Publication
22260730 | J:181881
 
First Author: Lee JS
Year: 2012
Journal: BMC Genomics
Title: Transcriptional ontogeny of the developing liver.
Volume: 13
Pages: 33
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Publication
9989504 | -
First Author: Bilwes AM
Year: 1999
Journal: Cell
Title: Structure of CheA, a signal-transducing histidine kinase.
Volume: 96
Issue: 1
Pages: 131-41
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Publication
8868347 | -
First Author: Perego M
Year: 1996
Journal: Trends Genet
Title: Protein aspartate phosphatases control the output of two-component signal transduction systems.
Volume: 12
Issue: 3
Pages: 97-101
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Publication
10426948 | -
First Author: Tomomori C
Year: 1999
Journal: Nat Struct Biol
Title: Solution structure of the homodimeric core domain of Escherichia coli histidine kinase EnvZ.
Volume: 6
Issue: 8
Pages: 729-34
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Publication
11145881 | -
First Author: Vierstra RD
Year: 2000
Journal: Semin Cell Dev Biol
Title: Bacteriophytochromes: new tools for understanding phytochrome signal transduction.
Volume: 11
Issue: 6
Pages: 511-21
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Publication
8029829 | -
First Author: Alex LA
Year: 1994
Journal: Trends Genet
Title: Protein histidine kinases and signal transduction in prokaryotes and eukaryotes.
Volume: 10
Issue: 4
Pages: 133-8
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Publication
1482126 | -
 
First Author: Parkinson JS
Year: 1992
Journal: Annu Rev Genet
Title: Communication modules in bacterial signaling proteins.
Volume: 26
Pages: 71-112
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Publication
12372152 | -
First Author: Wolanin PM
Year: 2002
Journal: Genome Biol
Title: Histidine protein kinases: key signal transducers outside the animal kingdom.
Volume: 3
Issue: 10
Pages: REVIEWS3013
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Publication
10966457 | -
 
First Author: Stock AM
Year: 2000
Journal: Annu Rev Biochem
Title: Two-component signal transduction.
Volume: 69
Pages: 183-215
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Publication
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