Type |
Details |
Score |
Publication |
First Author: |
Araki K |
Year: |
1999 |
Journal: |
Cell Mol Biol (Noisy-le-grand) |
Title: |
Exchangeable gene trap using the Cre/mutated lox system. |
Volume: |
45 |
Issue: |
5 |
Pages: |
737-50 |
|
•
•
•
•
•
|
Publication |
First Author: |
Taniwaki T |
Year: |
2005 |
Journal: |
Dev Growth Differ |
Title: |
Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. |
Volume: |
47 |
Issue: |
3 |
Pages: |
163-72 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mammalian Functional Genomics Centre |
Year: |
2010 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the NorCOMM project by the Mammalian Functional Genomics Centre (Mfgc), University of Manitoba |
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•
•
•
•
•
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Publication |
First Author: |
Tang F |
Year: |
2011 |
Journal: |
PLoS One |
Title: |
Deterministic and stochastic allele specific gene expression in single mouse blastomeres. |
Volume: |
6 |
Issue: |
6 |
Pages: |
e21208 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2001 |
|
Title: |
Gene Ontology Annotation by the MGI Curatorial Staff |
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•
•
•
•
•
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Publication |
First Author: |
GOA curators, MGI curators |
Year: |
2001 |
|
Title: |
Gene Ontology annotation based on Enzyme Commission mapping |
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•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2003 |
Journal: |
Database Download |
Title: |
Integrating Computational Gene Models into the Mouse Genome Informatics (MGI) Database |
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•
•
•
•
•
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Publication |
First Author: |
Hansen J |
Year: |
2003 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. |
Volume: |
100 |
Issue: |
17 |
Pages: |
9918-22 |
|
•
•
•
•
•
|
Publication |
First Author: |
Friedel RH |
Year: |
2007 |
Journal: |
Brief Funct Genomic Proteomic |
Title: |
EUCOMM--the European conditional mouse mutagenesis program. |
Volume: |
6 |
Issue: |
3 |
Pages: |
180-5 |
|
•
•
•
•
•
|
Publication |
First Author: |
MGI and IMPC |
Year: |
2018 |
Journal: |
Database Release |
Title: |
MGI Load of Endonuclease-Mediated Alleles (CRISPR) from the International Mouse Phenotyping Consortium (IMPC) |
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•
•
•
•
•
|
Publication |
First Author: |
Stryke D |
Year: |
2003 |
Journal: |
Nucleic Acids Res |
Title: |
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. |
Volume: |
31 |
Issue: |
1 |
Pages: |
278-81 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bedogni F |
Year: |
2021 |
Journal: |
Front Mol Neurosci |
Title: |
Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. |
Volume: |
14 |
|
Pages: |
686034 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lennon G |
Year: |
1999 |
Journal: |
Database Download |
Title: |
WashU-HHMI Mouse EST Project |
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•
•
•
•
•
|
Publication |
First Author: |
Shanghai Model Organisms Center |
Year: |
2017 |
Journal: |
MGI Direct Data Submission |
Title: |
Information obtained from the Shanghai Model Organisms Center (SMOC), Shanghai, China |
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•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC) |
Year: |
2014 |
Journal: |
Database Release |
Title: |
Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database |
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•
•
•
•
•
|
Publication |
First Author: |
Hansen GM |
Year: |
2008 |
Journal: |
Genome Res |
Title: |
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. |
Volume: |
18 |
Issue: |
10 |
Pages: |
1670-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2014 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-rat orthologs |
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•
•
•
•
•
|
Publication |
First Author: |
Magdaleno S |
Year: |
2006 |
Journal: |
PLoS Biol |
Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
Volume: |
4 |
Issue: |
4 |
Pages: |
e86 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2003 |
|
Title: |
MGI Sequence Curation Reference |
|
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|
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•
•
•
•
•
|
Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
Adams DJ |
Year: |
2024 |
Journal: |
Nature |
Title: |
Genetic determinants of micronucleus formation in vivo. |
Volume: |
627 |
Issue: |
8002 |
Pages: |
130-136 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zambrowicz BP |
Year: |
2003 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. |
Volume: |
100 |
Issue: |
24 |
Pages: |
14109-14 |
|
•
•
•
•
•
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Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
|
Title: |
GemPharmatech Website. |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI) |
Year: |
2008 |
Journal: |
Database Download |
Title: |
Mouse Gene Trap Data Load from dbGSS |
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|
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•
•
•
•
•
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Publication |
First Author: |
Cyagen Biosciences Inc. |
Year: |
2022 |
|
Title: |
Cyagen Biosciences Website. |
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•
•
•
•
•
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Publication |
First Author: |
AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators |
Year: |
2011 |
|
Title: |
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity |
|
|
|
|
•
•
•
•
•
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Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping |
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|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GOA curators |
Year: |
2016 |
|
Title: |
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
Year: |
2004 |
Journal: |
Database Release |
Title: |
Mouse T31 Radiation Hybrid Data Load |
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|
|
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•
•
•
•
•
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Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Diez-Roux G |
Year: |
2011 |
Journal: |
PLoS Biol |
Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Volume: |
9 |
Issue: |
1 |
Pages: |
e1000582 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
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|
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•
•
•
•
•
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Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
|
Title: |
Annotation inferences using phylogenetic trees |
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|
|
|
•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
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|
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•
•
•
•
•
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Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
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|
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
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|
|
|
•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
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|
|
•
•
•
•
•
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Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
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|
|
•
•
•
•
•
|
Publication |
First Author: |
Chen C |
Year: |
2016 |
Journal: |
Biochim Biophys Acta |
Title: |
Compression regulates gene expression of chondrocytes through HDAC4 nuclear relocation via PP2A-dependent HDAC4 dephosphorylation. |
Volume: |
1863 |
Issue: |
7 Pt A |
Pages: |
1633-42 |
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
GSE49383 |
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
Publication |
First Author: |
Worton LE |
Year: |
2018 |
Journal: |
PLoS One |
Title: |
Botulinum toxin A-induced muscle paralysis stimulates Hdac4 and differential miRNA expression. |
Volume: |
13 |
Issue: |
11 |
Pages: |
e0207354 |
|
•
•
•
•
•
|
Publication |
First Author: |
Guo X |
Year: |
2015 |
Journal: |
Nat Commun |
Title: |
A short N-terminal domain of HDAC4 preserves photoreceptors and restores visual function in retinitis pigmentosa. |
Volume: |
6 |
|
Pages: |
8005 |
|
•
•
•
•
•
|
Publication |
First Author: |
Seo HW |
Year: |
2009 |
Journal: |
FEBS Lett |
Title: |
Transcriptional activation of hypoxia-inducible factor-1alpha by HDAC4 and HDAC5 involves differential recruitment of p300 and FIH-1. |
Volume: |
583 |
Issue: |
1 |
Pages: |
55-60 |
|
•
•
•
•
•
|
Publication |
First Author: |
Nishimori S |
Year: |
2021 |
Journal: |
Bone |
Title: |
PTHrP targets salt-inducible kinases, HDAC4 and HDAC5, to repress chondrocyte hypertrophy in the growth plate. |
Volume: |
142 |
|
Pages: |
115709 |
|
•
•
•
•
•
|
Publication |
First Author: |
Federspiel JD |
Year: |
2019 |
Journal: |
Mol Cell Proteomics |
Title: |
Hdac4 Interactions in Huntington's Disease Viewed Through the Prism of Multiomics. |
Volume: |
18 |
Issue: |
8 suppl 1 |
Pages: |
S92-S113 |
|
•
•
•
•
•
|
Publication |
First Author: |
Fang M |
Year: |
2016 |
Journal: |
Biochim Biophys Acta |
Title: |
HDAC4 mediates IFN-γ induced disruption of energy expenditure-related gene expression by repressing SIRT1 transcription in skeletal muscle cells. |
Volume: |
1859 |
Issue: |
2 |
Pages: |
294-305 |
|
•
•
•
•
•
|
UniProt Feature |
Begin: |
389 |
Description: |
In HD; disrupts sequence-specific DNA-binding; no effect on homodimerization or interaction with HDAC4 and HDAC5. |
Type: |
sequence variant |
End: |
389 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yang Z |
Year: |
2017 |
Journal: |
Am J Pathol |
Title: |
Cathepsin H-Mediated Degradation of HDAC4 for Matrix Metalloproteinase Expression in Hepatic Stellate Cells: Implications of Epigenetic Suppression of Matrix Metalloproteinases in Fibrosis through Stabilization of Class IIa Histone Deacetylases. |
Volume: |
187 |
Issue: |
4 |
Pages: |
781-797 |
|
•
•
•
•
•
|
Interaction Experiment |
Description: |
Nuclear accumulation of HDAC4 in ATM deficiency promotes neurodegeneration in ataxia telangiectasia. |
|
•
•
•
•
•
|
Interaction Experiment |
Description: |
Hdac4 Interactions in Huntingtons Disease Viewed Through the Prism of Multiomics. |
|
•
•
•
•
•
|
Publication |
First Author: |
Fitzsimons HL |
Year: |
2015 |
Journal: |
Neurobiol Learn Mem |
Title: |
The Class IIa histone deacetylase HDAC4 and neuronal function: Nuclear nuisance and cytoplasmic stalwart? |
Volume: |
123 |
|
Pages: |
149-58 |
|
•
•
•
•
•
|
Allele |
Name: |
histone deacetylase 4; targeted mutation 1, Eric N Olson |
Allele Type: |
Targeted |
Attribute String: |
Conditional ready, No functional change |
|
•
•
•
•
•
|
Publication |
First Author: |
Kirsh O |
Year: |
2002 |
Journal: |
EMBO J |
Title: |
The SUMO E3 ligase RanBP2 promotes modification of the HDAC4 deacetylase. |
Volume: |
21 |
Issue: |
11 |
Pages: |
2682-91 |
|
•
•
•
•
•
|
Strain |
Attribute String: |
congenic |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Hdac4/Hdac4 |
Background: |
involves: 129S/SvEv |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Hdac4/Hdac4 |
Background: |
B6.129S(Cg)-Hdac4 |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
GSE38219 |
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
GSE38218 |
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
Allele |
Name: |
transgene insertion 1, Eric N Olson |
Allele Type: |
Transgenic |
Attribute String: |
Inserted expressed sequence |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Hdac4/Hdac4 Tg(Myog-cre)1Eno/? |
Background: |
involves: 129S/SvEv |
Zygosity: |
cn |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Tg(Col2a1-Hdac4)1Eno/? |
Background: |
Not Specified |
Zygosity: |
ot |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Strain |
Attribute String: |
congenic, mutant strain, targeted mutation |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Hdac4/Hdac4 Scn10a/Scn10a<+> |
Background: |
B6.129(Cg)-Hdac4 Scn10a |
Zygosity: |
cn |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Hdac4/Hdac4 Hdac5/Hdac5 Tg(Myog-cre)1Eno/? |
Background: |
involves: 129 * 129S/SvEv * 129S2/SvPas |
Zygosity: |
cn |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Wang Z |
Year: |
2014 |
Journal: |
Epigenomics |
Title: |
HDAC4: mechanism of regulation and biological functions. |
Volume: |
6 |
Issue: |
1 |
Pages: |
139-50 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kassis H |
Year: |
2015 |
Journal: |
Stroke |
Title: |
Stroke Induces Nuclear Shuttling of Histone Deacetylase 4. |
Volume: |
46 |
Issue: |
7 |
Pages: |
1909-15 |
|
•
•
•
•
•
|
Publication |
First Author: |
Parra M |
Year: |
2015 |
Journal: |
FEBS J |
Title: |
Class IIa HDACs - new insights into their functions in physiology and pathology. |
Volume: |
282 |
Issue: |
9 |
Pages: |
1736-44 |
|
•
•
•
•
•
|
Publication |
First Author: |
Glozak MA |
Year: |
2005 |
Journal: |
Gene |
Title: |
Acetylation and deacetylation of non-histone proteins. |
Volume: |
363 |
|
Pages: |
15-23 |
|
•
•
•
•
•
|
Publication |
First Author: |
Di Giorgio E |
Year: |
2016 |
Journal: |
Epigenomics |
Title: |
Regulation of class IIa HDAC activities: it is not only matter of subcellular localization. |
Volume: |
8 |
Issue: |
2 |
Pages: |
251-69 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kasler HG |
Year: |
2007 |
Journal: |
Mol Cell Biol |
Title: |
Histone deacetylase 7 functions as a key regulator of genes involved in both positive and negative selection of thymocytes. |
Volume: |
27 |
Issue: |
14 |
Pages: |
5184-200 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mathias RA |
Year: |
2015 |
Journal: |
Mol Cell Proteomics |
Title: |
Post-translational modifications regulate class IIa histone deacetylase (HDAC) function in health and disease. |
Volume: |
14 |
Issue: |
3 |
Pages: |
456-70 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
Histone deacetylases (HDACs) modulate the acetylation level of histones to regulate chromatin structure and gene expression. They are considered to be crucial regulators of specific developmental and differentiation processes. Whilst they are primarily involved in the deacetylation of histones, they have also been shown to regulate the acetylation levels of non-histone proteins [].Class IIa histone deacetylases (HDACs4, -5, -6, -7, -9 and -10) modulate the physiology of the human cardiovascular, musculoskeletal, nervous, and immune systems [, [].HDAC4 performs a wide variety of functions, including the regulation of cell growth, survival and proliferation, and the regulation of gene transcription. It has been closely associated with the development of tumours in various tissues. It also induces demethylation of histone proteins, and has been shown to be subject to post-transcriptional modification by multiple methods []. HDAC4 has been reported to regulate chondrocyte hypertrophy and endochondral bone formation, muscle development, and cardiovascular diseases [].HDAC4 is localized to both the nucleus and cytoplasm, and undergoes subcellular shuttling in response to synaptic activity and environmental signals [, ]. It is important for neuronal development and function, and has been implicated in a number of neuronal diseases including brachydactyly mental retardation (BDMR) syndrome, ataxia telangiectasia, and Huntington's disease [].Histone deacetylase 7 (HDAC7) is highly expressed in double-positive thymocytes, suggesting a possible role in thymic T-cell development [, ]. |
|
•
•
•
•
•
|
Publication |
First Author: |
Liu R |
Year: |
2009 |
Journal: |
Cancer Res |
Title: |
FOXP3 up-regulates p21 expression by site-specific inhibition of histone deacetylase 2/histone deacetylase 4 association to the locus. |
Volume: |
69 |
Issue: |
6 |
Pages: |
2252-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Pardo M |
Year: |
2017 |
Journal: |
JCI Insight |
Title: |
Intranasal siRNA administration reveals IGF2 deficiency contributes to impaired cognition in Fragile X syndrome mice. |
Volume: |
2 |
Issue: |
6 |
Pages: |
e91782 |
|
•
•
•
•
•
|
Publication |
First Author: |
Dimitrakopoulos C |
Year: |
2021 |
Journal: |
BMC Genomics |
Title: |
Multi-omics data integration reveals novel drug targets in hepatocellular carcinoma. |
Volume: |
22 |
Issue: |
1 |
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