Type |
Details |
Score |
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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|
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•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
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|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
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•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
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|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
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|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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|
•
•
•
•
•
|
Allele |
Name: |
lysosomal trafficking regulator; beige 14 Jackson |
Allele Type: |
Chemically induced (ENU) |
|
|
•
•
•
•
•
|
Strain |
Attribute String: |
chemically induced mutation, mutant stock |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Lyst/Lyst |
Background: |
C3Fe;B6-Lyst |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Allele |
Name: |
lysosomal trafficking regulator; endonuclease-mediated mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Null/knockout |
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•
•
•
•
•
|
Publication |
First Author: |
Kruusvee V |
Year: |
2017 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Structure of the MeCP2-TBLR1 complex reveals a molecular basis for Rett syndrome and related disorders. |
Volume: |
114 |
Issue: |
16 |
Pages: |
E3243-E3250 |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
|
•
•
•
•
•
|
Publication |
First Author: |
Koerner MV |
Year: |
2018 |
Journal: |
Genes Dev |
Title: |
Toxicity of overexpressed MeCP2 is independent of HDAC3 activity. |
Volume: |
32 |
Issue: |
23-24 |
Pages: |
1514-1524 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ebert DH |
Year: |
2013 |
Journal: |
Nature |
Title: |
Activity-dependent phosphorylation of MeCP2 threonine 308 regulates interaction with NCoR. |
Volume: |
499 |
Issue: |
7458 |
Pages: |
341-5 |
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•
•
•
•
•
|
Publication |
First Author: |
Tillotson R |
Year: |
2020 |
Journal: |
bioRxiv |
Title: |
Neuronal non-CG methylation is an essential target for MeCP2 function. |
|
|
|
|
•
•
•
•
•
|
Allele |
Name: |
lysosomal trafficking regulator; beige 15 Jackson |
Allele Type: |
Chemically induced (ENU) |
|
|
•
•
•
•
•
|
Strain |
Attribute String: |
chemically induced mutation, coisogenic, mutant strain |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Lyst/Lyst |
Background: |
involves: C3H * C57BL/6J |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Tillotson R |
Year: |
2021 |
Journal: |
Mol Cell |
Title: |
Neuronal non-CG methylation is an essential target for MeCP2 function. |
Volume: |
81 |
Issue: |
6 |
Pages: |
1260-1275.e12 |
|
•
•
•
•
•
|
Allele |
Name: |
lysosomal trafficking regulator; beige Nagoya |
Allele Type: |
Spontaneous |
Attribute String: |
Not Specified |
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
GSE16994 |
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
Publication |
First Author: |
Wang X |
Year: |
2000 |
Journal: |
J Neurosci |
Title: |
Neurobeachin: A protein kinase A-anchoring, beige/Chediak-higashi protein homolog implicated in neuronal membrane traffic. |
Volume: |
20 |
Issue: |
23 |
Pages: |
8551-65 |
|
•
•
•
•
•
|
Allele |
Name: |
lysosomal trafficking regulator; beige 3 Bruce Beutler |
Allele Type: |
Chemically induced (ENU) |
|
|
•
•
•
•
•
|
Allele |
Name: |
lysosomal trafficking regulator; beige 8 Bruce Beutler |
Allele Type: |
Chemically induced (ENU) |
Attribute String: |
Not Specified |
|
•
•
•
•
•
|
Allele |
Name: |
lysosomal trafficking regulator; beige 9 Bruce Beutler |
Allele Type: |
Chemically induced (ENU) |
Attribute String: |
Not Specified |
|
•
•
•
•
•
|
Strain |
Attribute String: |
chemically induced mutation, coisogenic, mutant strain |
|
•
•
•
•
•
|
Allele |
Name: |
lysosomal trafficking regulator; beige 11 Bruce Beutler |
Allele Type: |
Chemically induced (ENU) |
Attribute String: |
Not Specified |
|
•
•
•
•
•
|
Strain |
Attribute String: |
chemically induced mutation, coisogenic, mutant strain |
|
•
•
•
•
•
|
Strain |
Attribute String: |
congenic, mutant strain, spontaneous mutation |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Lyst/Lyst |
Background: |
C57BL/6J-Lyst |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Lyst/Lyst |
Background: |
C57BL/6J-Lyst |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, chemically induced mutation |
|
•
•
•
•
•
|
Strain |
Attribute String: |
mutant strain, chemically induced mutation, coisogenic |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Lyst/Lyst |
Background: |
C57BL/6J-Lyst |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Lyst/Lyst |
Background: |
C57BL/6J-Lyst |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Homologous_superfamily |
Description: |
BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins [, , , , , , , ].The BEACH domain is usually followed by a series of WD repeats. |
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•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes. This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins [, , , , , , , ].The BEACH domain is usually followed by a series of WD repeats. |
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•
•
•
•
•
|
Publication |
First Author: |
Chen GY |
Year: |
2004 |
Journal: |
Cell Struct Funct |
Title: |
Expression profile of mouse BWF1, a protein with a BEACH domain, WD40 domain and FYVE domain. |
Volume: |
29 |
Issue: |
2 |
Pages: |
35-42 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
246
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
De Lozanne A |
Year: |
2003 |
Journal: |
Traffic |
Title: |
The role of BEACH proteins in Dictyostelium. |
Volume: |
4 |
Issue: |
1 |
Pages: |
6-12 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chen J |
Year: |
2004 |
Journal: |
Brain Res Mol Brain Res |
Title: |
Identification and characterization of NBEAL1, a novel human neurobeachin-like 1 protein gene from fetal brain, which is up regulated in glioma. |
Volume: |
125 |
Issue: |
1-2 |
Pages: |
147-55 |
|
•
•
•
•
•
|
Publication |
First Author: |
Khodosh R |
Year: |
2006 |
Journal: |
Development |
Title: |
Bchs, a BEACH domain protein, antagonizes Rab11 in synapse morphogenesis and other developmental events. |
Volume: |
133 |
Issue: |
23 |
Pages: |
4655-65 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wu WI |
Year: |
2004 |
Journal: |
Traffic |
Title: |
Structure-function analysis of the BEACH protein LvsA. |
Volume: |
5 |
Issue: |
5 |
Pages: |
346-55 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ward DM |
Year: |
2002 |
Journal: |
Curr Mol Med |
Title: |
Chediak-Higashi syndrome: a clinical and molecular view of a rare lysosomal storage disorder. |
Volume: |
2 |
Issue: |
5 |
Pages: |
469-77 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wang N |
Year: |
2002 |
Journal: |
J Cell Biochem |
Title: |
BEACH family of proteins: phylogenetic and functional analysis of six Dictyostelium BEACH proteins. |
Volume: |
86 |
Issue: |
3 |
Pages: |
561-70 |
|
•
•
•
•
•
|
Publication |
First Author: |
Trantow CM |
Year: |
2011 |
Journal: |
Invest Ophthalmol Vis Sci |
Title: |
Microarray analysis of iris gene expression in mice with mutations influencing pigmentation. |
Volume: |
52 |
Issue: |
1 |
Pages: |
237-48 |
|
•
•
•
•
•
|
Publication |
First Author: |
Jackson IJ |
Year: |
1997 |
Journal: |
Hum Mol Genet |
Title: |
Homologous pigmentation mutations in human, mouse and other model organisms. |
Volume: |
6 |
Issue: |
10 |
Pages: |
1613-24 |
|
•
•
•
•
•
|
Publication |
First Author: |
Fujita H |
Year: |
2004 |
Journal: |
J Cell Sci |
Title: |
Mammalian class E Vps proteins, SBP1 and mVps2/CHMP2A, interact with and regulate the function of an AAA-ATPase SKD1/Vps4B. |
Volume: |
117 |
Issue: |
Pt 14 |
Pages: |
2997-3009 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
484
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
920
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1934
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
758
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
764
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
575
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
550
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1179
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
707
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1934
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1073
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
2577
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
2936
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
3183
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
3024
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
2032
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
809
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
2688
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
2856
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
2742
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
2750
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
2854
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
2790
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
2750
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
2716
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
2723
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
646
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
3508
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
3512
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
3526
 |
Fragment?: |
false |
|
•
•
•
•
•
|