Type |
Details |
Score |
Publication |
First Author: |
Goldfarb Y |
Year: |
2016 |
Journal: |
Cell Rep |
Title: |
HDAC3 Is a Master Regulator of mTEC Development. |
Volume: |
15 |
Issue: |
3 |
Pages: |
651-665 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ohshima D |
Year: |
2011 |
Journal: |
Biochem Biophys Res Commun |
Title: |
RANK signaling induces interferon-stimulated genes in the fetal thymic stroma. |
Volume: |
408 |
Issue: |
4 |
Pages: |
530-6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Xu LG |
Year: |
2004 |
Journal: |
J Biol Chem |
Title: |
TRAF7 potentiates MEKK3-induced AP1 and CHOP activation and induces apoptosis. |
Volume: |
279 |
Issue: |
17 |
Pages: |
17278-82 |
|
•
•
•
•
•
|
Publication |
First Author: |
Akiyama N |
Year: |
2016 |
Journal: |
J Exp Med |
Title: |
Identification of embryonic precursor cells that differentiate into thymic epithelial cells expressing autoimmune regulator. |
Volume: |
213 |
Issue: |
8 |
Pages: |
1441-58 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zindl CL |
Year: |
2009 |
Journal: |
Immunity |
Title: |
The lymphotoxin LTalpha(1)beta(2) controls postnatal and adult spleen marginal sinus vascular structure and function. |
Volume: |
30 |
Issue: |
3 |
Pages: |
408-20 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yilmaz ZB |
Year: |
2003 |
Journal: |
EMBO J |
Title: |
RelB is required for Peyer's patch development: differential regulation of p52-RelB by lymphotoxin and TNF. |
Volume: |
22 |
Issue: |
1 |
Pages: |
121-30 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouri Y |
Year: |
2011 |
Journal: |
J Immunol |
Title: |
Lymphotoxin signal promotes thymic organogenesis by eliciting RANK expression in the embryonic thymic stroma. |
Volume: |
186 |
Issue: |
9 |
Pages: |
5047-57 |
|
•
•
•
•
•
|
Publication |
First Author: |
Natsuaki Y |
Year: |
2014 |
Journal: |
Nat Immunol |
Title: |
Perivascular leukocyte clusters are essential for efficient activation of effector T cells in the skin. |
Volume: |
15 |
Issue: |
11 |
Pages: |
1064-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mancino A |
Year: |
2013 |
Journal: |
EMBO J |
Title: |
I kappa B kinase alpha (IKKα) activity is required for functional maturation of dendritic cells and acquired immunity to infection. |
Volume: |
32 |
Issue: |
6 |
Pages: |
816-28 |
|
•
•
•
•
•
|
Publication |
First Author: |
Moro K |
Year: |
2010 |
Journal: |
Nature |
Title: |
Innate production of T(H)2 cytokines by adipose tissue-associated c-Kit(+)Sca-1(+) lymphoid cells. |
Volume: |
463 |
Issue: |
7280 |
Pages: |
540-4 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hikosaka Y |
Year: |
2008 |
Journal: |
Immunity |
Title: |
The cytokine RANKL produced by positively selected thymocytes fosters medullary thymic epithelial cells that express autoimmune regulator. |
Volume: |
29 |
Issue: |
3 |
Pages: |
438-50 |
|
•
•
•
•
•
|
Publication |
First Author: |
Nagatake T |
Year: |
2009 |
Journal: |
J Exp Med |
Title: |
Id2-, RORgammat-, and LTbetaR-independent initiation of lymphoid organogenesis in ocular immunity. |
Volume: |
206 |
Issue: |
11 |
Pages: |
2351-64 |
|
•
•
•
•
•
|
Publication |
First Author: |
Du X |
Year: |
2018 |
Journal: |
Nature |
Title: |
Hippo/Mst signalling couples metabolic state and immune function of CD8α+ dendritic cells. |
Volume: |
558 |
Issue: |
7708 |
Pages: |
141-145 |
|
•
•
•
•
•
|
Publication |
First Author: |
Guendel F |
Year: |
2020 |
Journal: |
Immunity |
Title: |
Group 3 Innate Lymphoid Cells Program a Distinct Subset of IL-22BP-Producing Dendritic Cells Demarcating Solitary Intestinal Lymphoid Tissues. |
Volume: |
53 |
Issue: |
5 |
Pages: |
1015-1032.e8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Blackburn J |
Year: |
2015 |
Journal: |
J Dent Res |
Title: |
Excess NF-κB induces ectopic odontogenesis in embryonic incisor epithelium. |
Volume: |
94 |
Issue: |
1 |
Pages: |
121-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Matsumoto M |
Year: |
1999 |
Journal: |
J Med Invest |
Title: |
Role of TNF ligand and receptor family in the lymphoid organogenesis defined by gene targeting. |
Volume: |
46 |
Issue: |
3-4 |
Pages: |
141-50 |
|
•
•
•
•
•
|
Publication |
First Author: |
Craig EA |
Year: |
2008 |
Journal: |
Dev Dyn |
Title: |
MAP3Ks as central regulators of cell fate during development. |
Volume: |
237 |
Issue: |
11 |
Pages: |
3102-14 |
|
•
•
•
•
•
|
Publication |
First Author: |
Satpathy AT |
Year: |
2013 |
Journal: |
Nat Immunol |
Title: |
Notch2-dependent classical dendritic cells orchestrate intestinal immunity to attaching-and-effacing bacterial pathogens. |
Volume: |
14 |
Issue: |
9 |
Pages: |
937-48 |
|
•
•
•
•
•
|
Publication |
First Author: |
Akiyama T |
Year: |
2008 |
Journal: |
Immunity |
Title: |
The tumor necrosis factor family receptors RANK and CD40 cooperatively establish the thymic medullary microenvironment and self-tolerance. |
Volume: |
29 |
Issue: |
3 |
Pages: |
423-37 |
|
•
•
•
•
•
|
Publication |
First Author: |
Onder L |
Year: |
2017 |
Journal: |
Immunity |
Title: |
Lymphatic Endothelial Cells Control Initiation of Lymph Node Organogenesis. |
Volume: |
47 |
Issue: |
1 |
Pages: |
80-92.e4 |
|
•
•
•
•
•
|
Publication |
First Author: |
Arnold CN |
Year: |
2012 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
A forward genetic screen reveals roles for Nfkbid, Zeb1, and Ruvbl2 in humoral immunity. |
Volume: |
109 |
Issue: |
31 |
Pages: |
12286-93 |
|
•
•
•
•
•
|
Publication |
First Author: |
Fukuda K |
Year: |
2003 |
Journal: |
Dev Biol |
Title: |
Mesenchymal expression of Foxl1, a winged helix transcriptional factor, regulates generation and maintenance of gut-associated lymphoid organs. |
Volume: |
255 |
Issue: |
2 |
Pages: |
278-89 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shanghai Model Organisms Center |
Year: |
2017 |
Journal: |
MGI Direct Data Submission |
Title: |
Information obtained from the Shanghai Model Organisms Center (SMOC), Shanghai, China |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mutant Mouse Regional Resource Centers |
Year: |
2004 |
Journal: |
Unpublished |
Title: |
Information obtained from the Mutant Mouse Regional Resource Centers (MMRRC) |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GO Central curators, GOA curators, Rhea curators |
Year: |
2020 |
|
Title: |
Automatic Gene Ontology annotation based on Rhea mapping |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GOA curators, MGI curators |
Year: |
2001 |
|
Title: |
Gene Ontology annotation based on Enzyme Commission mapping |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2016 |
|
Title: |
Automatic assignment of GO terms using logical inference, based on on inter-ontology links |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Visel A |
Year: |
2004 |
Journal: |
Nucleic Acids Res |
Title: |
GenePaint.org: an atlas of gene expression patterns in the mouse embryo. |
Volume: |
32 |
Issue: |
Database issue |
Pages: |
D552-6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Velocigene |
Year: |
2008 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the KOMP project by Velocigene (Regeneron Pharmaceuticals) |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
International Mouse Strain Resource |
Year: |
2014 |
Journal: |
Database Download |
Title: |
MGI download of germline transmission data for alleles from IMSR strain data |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Wellcome Trust Sanger Institute |
Year: |
2010 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the EUCOMM and EUCOMMTools projects by the Wellcome Trust Sanger Institute |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GUDMAP Consortium |
Year: |
2004 |
Journal: |
www.gudmap.org |
Title: |
GUDMAP: the GenitoUrinary Development Molecular Anatomy Project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Hansen GM |
Year: |
2008 |
Journal: |
Genome Res |
Title: |
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. |
Volume: |
18 |
Issue: |
10 |
Pages: |
1670-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2014 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-rat orthologs |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
MGD Nomenclature Committee |
Year: |
1995 |
|
Title: |
Nomenclature Committee Use |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
|
Title: |
GemPharmatech Website. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Skarnes WC |
Year: |
2011 |
Journal: |
Nature |
Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
Volume: |
474 |
Issue: |
7351 |
Pages: |
337-42 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI) |
Year: |
2008 |
Journal: |
Database Download |
Title: |
Mouse Gene Trap Data Load from dbGSS |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GOA curators |
Year: |
2016 |
|
Title: |
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Okazaki Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
563-73 |
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
|
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|
|
•
•
•
•
•
|
Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
|
Title: |
Annotation inferences using phylogenetic trees |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
|
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|
|
•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
|
|
|
•
•
•
•
•
|
UniProt Feature |
Begin: |
176 |
Description: |
Phosphoserine; by MAP3K14 |
Type: |
modified residue |
End: |
176 |
|
•
•
•
•
•
|
UniProt Feature |
Begin: |
869 |
Description: |
Phosphoserine; by MAP3K14 |
Type: |
modified residue |
End: |
869 |
|
•
•
•
•
•
|
UniProt Feature |
Begin: |
865 |
Description: |
Phosphoserine; by MAP3K14 |
Type: |
modified residue |
End: |
865 |
|
•
•
•
•
•
|
Allele |
Name: |
mitogen-activated protein kinase kinase kinase 14; endonuclease-mediated mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Null/knockout |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, mutant strain, endonuclease-mediated mutation |
|
•
•
•
•
•
|
Publication |
First Author: |
Kanno Y |
Year: |
2010 |
Journal: |
J Recept Signal Transduct Res |
Title: |
TACI induces cIAP1-mediated ubiquitination of NIK by TRAF2 and TANK to limit non-canonical NF-kappaB signaling. |
Volume: |
30 |
Issue: |
2 |
Pages: |
121-32 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kim HB |
Year: |
2010 |
Journal: |
Biosystems |
Title: |
NIK and IKKbeta interdependence in NF-kappaB signalling--flux analysis of regulation through metabolites. |
Volume: |
99 |
Issue: |
2 |
Pages: |
140-9 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
STKs catalyse the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. MAP3K14 (also known as NIK) phosphorylates and activates Inhibitor of NF-KappaB Kinase (IKK) alpha, which is a regulator of NF-kB proteins, a family of transcription factors which are critical in many cellular functions including inflammatory responses, immune development, cell survival, and cell proliferation, among others []. NIK is essential in the IKKalpha-mediated non-canonical NF-kB signaling pathway, in which IKKalpha processes the IkB-like C terminus of NF-kB2/p100 to produce p52, allowing the p52/RelB dimer to migrate to the nucleus where it regulates gene transcription [, , ]. |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
TNF receptor-associated factor 1 (TRAF1) plays a role in the regulation of cell survival and apoptosis []. TRAF1 is unique among TRAF proteins in that it lacks a RING domain found in the N-terminal regions of other TRAFs []. The heterotrimer formed by TRAF1 and TRAF2 is part of a E3 ubiquitin-protein ligase complex that promotes ubiquitination of target proteins, such as MAP3K14 [, ].TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediated signaling events []. TRAF1 contains one zinc finger and one TRAF domain.The TRAF domain can be divided into a more divergent N-terminal alpha helical region (TRAF-N), and a highly conserved C-terminal MATH subdomain (TRAF-C) with an eight-stranded β-sandwich structure. TRAF-N mediates trimerization while TRAF-C interacts with receptors [, ]. |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
TNF receptor-associated factor 1 (TRAF1) plays a role in the regulation of cell survival and apoptosis []. TRAF1 is unique among TRAF proteins in that it lacks a RING domain found in the N-terminal regions of other TRAFs []. The heterotrimer formed by TRAF1 and TRAF2 is part of a E3 ubiquitin-protein ligase complex that promotes ubiquitination of target proteins, such as MAP3K14 [, ].TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediated signaling events []. TRAF1 contains one zinc finger and one TRAF domain. |
|
•
•
•
•
•
|
Publication |
First Author: |
Kato T Jr |
Year: |
2008 |
Journal: |
Genes Cells |
Title: |
Negative regulation of constitutive NF-kappaB and JNK signaling by PKN1-mediated phosphorylation of TRAF1. |
Volume: |
13 |
Issue: |
5 |
Pages: |
509-20 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zheng C |
Year: |
2010 |
Journal: |
Mol Cell |
Title: |
Crystal structures of the TRAF2: cIAP2 and the TRAF1: TRAF2: cIAP2 complexes: affinity, specificity, and regulation. |
Volume: |
38 |
Issue: |
1 |
Pages: |
101-13 |
|
•
•
•
•
•
|
Publication |
First Author: |
Irmler M |
Year: |
2000 |
Journal: |
FEBS Lett |
Title: |
Caspase-induced inactivation of the anti-apoptotic TRAF1 during Fas ligand-mediated apoptosis. |
Volume: |
468 |
Issue: |
2-3 |
Pages: |
129-33 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lee SY |
Year: |
2007 |
Journal: |
Adv Exp Med Biol |
Title: |
TRAF1 and its biological functions. |
Volume: |
597 |
|
Pages: |
25-31 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zapata JM |
Year: |
2002 |
Journal: |
Sci STKE |
Title: |
TRAF1: lord without a RING. |
Volume: |
2002 |
Issue: |
133 |
Pages: |
pe27 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
255
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
409
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
409
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
409
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
942
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
942
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Ye H |
Year: |
1999 |
Journal: |
Mol Cell |
Title: |
The structural basis for the recognition of diverse receptor sequences by TRAF2. |
Volume: |
4 |
Issue: |
3 |
Pages: |
321-30 |
|
•
•
•
•
•
|
Publication |
First Author: |
Park YC |
Year: |
1999 |
Journal: |
Nature |
Title: |
Structural basis for self-association and receptor recognition of human TRAF2. |
Volume: |
398 |
Issue: |
6727 |
Pages: |
533-8 |
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Publication |
First Author: |
Gerhard DS |
Year: |
2004 |
Journal: |
Genome Res |
Title: |
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |
Volume: |
14 |
Issue: |
10B |
Pages: |
2121-7 |
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