|  Help  |  About  |  Contact Us

Search our database by keyword

Examples

  • Search this entire website. Enter identifiers, names or keywords for genes, diseases, strains, ontology terms, etc. (e.g. Pax6, Parkinson, ataxia)
  • Use OR to search for either of two terms (e.g. OR mus) or quotation marks to search for phrases (e.g. "dna binding").
  • Boolean search syntax is supported: e.g. Balb* for partial matches or mus AND NOT embryo to exclude a term

Search results 301 to 381 out of 381 for Sema3d

<< First    < Previous  |  Next >    Last >>
0.024s

Categories

Hits by Category

Hits by Strain

Type Details Score
Publication
28059444 | J:277483
First Author: Sang C
Year: 2017
Journal: J Cell Physiol
Title: TNF-α promotes osteoclastogenesis through JNK signaling-dependent induction of Semaphorin3D expression in estrogen-deficiency induced osteoporosis.
Volume: 232
Issue: 12
Pages: 3396-3408
•
•
•
•
•
Publication
36266461 | J:330633
First Author: Shao A
Year: 2022
Journal: Sci Rep
Title: Multiomics analysis reveals that hepatocyte nuclear factor 1β regulates axon guidance genes in the developing mouse kidney.
Volume: 12
Issue: 1
Pages: 17586
•
•
•
•
•
Publication
24728844 | J:270128
First Author: Schulz Y
Year: 2014
Journal: Hum Genet
Title: CHD7, the gene mutated in CHARGE syndrome, regulates genes involved in neural crest cell guidance.
Volume: 133
Issue: 8
Pages: 997-1009
•
•
•
•
•
Publication
29623926 | J:310166
First Author: Lu WC
Year: 2018
Journal: Neural Regen Res
Title: The protocadherin alpha cluster is required for axon extension and myelination in the developing central nervous system.
Volume: 13
Issue: 3
Pages: 427-433
•
•
•
•
•
Publication
15550623 | J:95697
First Author: Gu C
Year: 2005
Journal: Science
Title: Semaphorin 3E and plexin-D1 control vascular pattern independently of neuropilins.
Volume: 307
Issue: 5707
Pages: 265-8
•
•
•
•
•
Publication
35933488 | J:327273
First Author: Jidigam VK
Year: 2022
Journal: Commun Biol
Title: Neuronal Bmal1 regulates retinal angiogenesis and neovascularization in mice.
Volume: 5
Issue: 1
Pages: 792
•
•
•
•
•
Publication
34230480 | J:307867
First Author: Quijada P
Year: 2021
Journal: Nat Commun
Title: Coordination of endothelial cell positioning and fate specification by the epicardium.
Volume: 12
Issue: 1
Pages: 4155
•
•
•
•
•
Publication
19812329 | J:153883
First Author: Kolk SM
Year: 2009
Journal: J Neurosci
Title: Semaphorin 3F is a bifunctional guidance cue for dopaminergic axons and controls their fasciculation, channeling, rostral growth, and intracortical targeting.
Volume: 29
Issue: 40
Pages: 12542-57
•
•
•
•
•
Publication
23991118 | J:205955
First Author: Katayama K
Year: 2013
Journal: PLoS One
Title: Deletion of Sema3a or plexinA1/plexinA3 causes defects in sensory afferent projections of statoacoustic ganglion neurons.
Volume: 8
Issue: 8
Pages: e72512
•
•
•
•
•
Publication
30628891 | J:277791
   
First Author: Sar Shalom H
Year: 2019
Journal: Elife
Title: Balance between BDNF and Semaphorins gates the innervation of the mammary gland.
Volume: 8
•
•
•
•
•
Publication
23797856 | J:220957
First Author: Tian X
Year: 2013
Journal: Cell Res
Title: Subepicardial endothelial cells invade the embryonic ventricle wall to form coronary arteries.
Volume: 23
Issue: 9
Pages: 1075-90
•
•
•
•
•
Publication
26102480 | J:225736
First Author: Payne S
Year: 2015
Journal: Dev Biol
Title: A critical role for the chromatin remodeller CHD7 in anterior mesoderm during cardiovascular development.
Volume: 405
Issue: 1
Pages: 82-95
•
•
•
•
•
Publication
22632726 | J:188362
First Author: Kuwajima T
Year: 2012
Journal: Neuron
Title: Optic chiasm presentation of Semaphorin6D in the context of Plexin-A1 and Nr-CAM promotes retinal axon midline crossing.
Volume: 74
Issue: 4
Pages: 676-90
•
•
•
•
•
Publication
36240771 | J:330969
     
First Author: Martins LF
Year: 2022
Journal: Neuron
Title: Motor neurons use push-pull signals to direct vascular remodeling critical for their connectivity.
•
•
•
•
•
Publication
26302206 | J:226819
   
First Author: Coate TM
Year: 2015
Journal: Elife
Title: Neuropilin-2/Semaphorin-3F-mediated repulsion promotes inner hair cell innervation by spiral ganglion neurons.
Volume: 4
•
•
•
•
•
Publication
17626059 | J:124081
First Author: Chung L
Year: 2007
Journal: Development
Title: Semaphorin signaling facilitates cleft formation in the developing salivary gland.
Volume: 134
Issue: 16
Pages: 2935-45
•
•
•
•
•
Publication
18489001 | J:136315
First Author: Takahashi K
Year: 2008
Journal: Dev Dyn
Title: Expression of the semaphorins Sema 3D and Sema 3F in the developing parathyroid and thymus.
Volume: 237
Issue: 6
Pages: 1699-708
•
•
•
•
•
Publication
22407321 | J:182578
First Author: Kay JN
Year: 2012
Journal: Nature
Title: MEGF10 and MEGF11 mediate homotypic interactions required for mosaic spacing of retinal neurons.
Volume: 483
Issue: 7390
Pages: 465-9
•
•
•
•
•
Publication
30021842 | J:264111
 
First Author: Liu CF
Year: 2018
Journal: Development
Title: SOX9 is dispensable for the initiation of epigenetic remodeling and the activation of marker genes at the onset of chondrogenesis.
Volume: 145
Issue: 14
•
•
•
•
•
Publication
25843547 | J:255020
 
First Author: Lee H
Year: 2015
Journal: Exp Neurol
Title: Slit and Semaphorin signaling governed by Islet transcription factors positions motor neuron somata within the neural tube.
Volume: 269
Pages: 17-27
•
•
•
•
•
Publication
35793630 | J:326542
First Author: van de Haar LL
Year: 2022
Journal: Cell Rep
Title: Molecular signatures and cellular diversity during mouse habenula development.
Volume: 40
Issue: 1
Pages: 111029
•
•
•
•
•
Publication
15869472 | J:100439
First Author: Cohen S
Year: 2005
Journal: Eur J Neurosci
Title: A semaphorin code defines subpopulations of spinal motor neurons during mouse development.
Volume: 21
Issue: 7
Pages: 1767-76
•
•
•
•
•
Publication
10843805 | J:62530
First Author: Tarantino LM
Year: 2000
Journal: Genomics
Title: A high-resolution radiation hybrid map of the proximal portion of mouse chromosome 5.
Volume: 66
Issue: 1
Pages: 55-64
•
•
•
•
•
Publication
18617019 | J:138310
First Author: Xu C
Year: 2008
Journal: Gene Expr Patterns
Title: Expression of Robo/Slit and Semaphorin/Plexin/Neuropilin family members in the developing hypothalamic paraventricular and supraoptic nuclei.
Volume: 8
Issue: 7-8
Pages: 502-7
•
•
•
•
•
Publication
29196262 | J:317548
First Author: Nishida S
Year: 2018
Journal: Biochem Biophys Res Commun
Title: Collagen VI suppresses fibronectin-induced enteric neural crest cell migration by downregulation of focal adhesion proteins.
Volume: 495
Issue: 1
Pages: 1461-1467
•
•
•
•
•
Publication
38355799 | J:345835
First Author: Qiu C
Year: 2024
Journal: Nature
Title: A single-cell time-lapse of mouse prenatal development from gastrula to birth.
Volume: 626
Issue: 8001
Pages: 1084-1093
•
•
•
•
•
Publication
22076636 | J:192712
First Author: Meadows SM
Year: 2012
Journal: Circ Res
Title: Integration of repulsive guidance cues generates avascular zones that shape mammalian blood vessels.
Volume: 110
Issue: 1
Pages: 34-46
•
•
•
•
•
Publication
31351040 | J:282348
First Author: Dasgupta K
Year: 2019
Journal: Dev Biol
Title: Molecular patterning of the embryonic cranial mesenchyme revealed by genome-wide transcriptional profiling.
Volume: 455
Issue: 2
Pages: 434-448
•
•
•
•
•
Publication
34003106 | J:307862
   
First Author: Wilkerson BA
Year: 2021
Journal: Elife
Title: Novel cell types and developmental lineages revealed by single-cell RNA-seq analysis of the mouse crista ampullaris.
Volume: 10
•
•
•
•
•
Publication
21491433 | J:174459
First Author: Boyle MP
Year: 2011
Journal: J Comp Neurol
Title: Cell-type-specific consequences of Reelin deficiency in the mouse neocortex, hippocampus, and amygdala.
Volume: 519
Issue: 11
Pages: 2061-89
•
•
•
•
•
Publication
17145500 | J:144660
First Author: Yoshida Y
Year: 2006
Journal: Neuron
Title: PlexinA1 signaling directs the segregation of proprioceptive sensory axons in the developing spinal cord.
Volume: 52
Issue: 5
Pages: 775-88
•
•
•
•
•
Publication
16284245 | J:103829
First Author: Chen B
Year: 2005
Journal: Proc Natl Acad Sci U S A
Title: Fezl regulates the differentiation and axon targeting of layer 5 subcortical projection neurons in cerebral cortex.
Volume: 102
Issue: 47
Pages: 17184-9
•
•
•
•
•
Publication
19906978 | J:154739
First Author: Quina LA
Year: 2009
Journal: J Neurosci
Title: Brn3a and Nurr1 mediate a gene regulatory pathway for habenula development.
Volume: 29
Issue: 45
Pages: 14309-22
•
•
•
•
•
Publication
24006456 | J:221550
First Author: Abonnenc M
Year: 2013
Journal: Circ Res
Title: Extracellular matrix secretion by cardiac fibroblasts: role of microRNA-29b and microRNA-30c.
Volume: 113
Issue: 10
Pages: 1138-47
•
•
•
•
•
Publication
29031500 | J:257654
First Author: Memic F
Year: 2018
Journal: Gastroenterology
Title: Transcription and Signaling Regulators in Developing Neuronal Subtypes of Mouse and Human Enteric Nervous System.
Volume: 154
Issue: 3
Pages: 624-636
•
•
•
•
•
Publication
- | J:80001
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: FANTOM2 Data Curation in Mouse Genome Informatics
•
•
•
•
•
Publication
24952961 | J:215487
First Author: Thompson CL
Year: 2014
Journal: Neuron
Title: A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain.
Volume: 83
Issue: 2
Pages: 309-323
•
•
•
•
•
Publication
- | J:204739
     
First Author: International Knockout Mouse Consortium
Year: 2014
Journal: Database Download
Title: MGI download of modified allele data from IKMC and creation of new knockout alleles
•
•
•
•
•
Publication
- | J:204812
     
First Author: International Mouse Strain Resource
Year: 2014
Journal: Database Download
Title: MGI download of germline transmission data for alleles from IMSR strain data
•
•
•
•
•
Publication
- | J:148605
     
First Author: Wellcome Trust Sanger Institute
Year: 2009
Journal: MGI Direct Data Submission
Title: Alleles produced for the KOMP project by the Wellcome Trust Sanger Institute
•
•
•
•
•
Publication
- | J:211773
     
First Author: Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC)
Year: 2014
Journal: Database Release
Title: Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database
•
•
•
•
•
Publication
- | J:72247
       
First Author: DDB, FB, MGI, GOA, ZFIN curators
Year: 2001
Title: Gene Ontology annotation through association of InterPro records with GO terms
•
•
•
•
•
Publication
16602821 | J:162220
First Author: Magdaleno S
Year: 2006
Journal: PLoS Biol
Title: BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system.
Volume: 4
Issue: 4
Pages: e86
•
•
•
•
•
Publication
- | J:78475
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Chromosome assignment of mouse genes using the Mouse Genome Sequencing Consortium (MGSC) assembly and the ENSEMBL Database
•
•
•
•
•
Publication
16141072 | J:99680
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
•
•
•
•
•
Publication
11217851 | J:65060
First Author: Kawai J
Year: 2001
Journal: Nature
Title: Functional annotation of a full-length mouse cDNA collection.
Volume: 409
Issue: 6821
Pages: 685-90
•
•
•
•
•
Publication
- | J:293217
       
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
•
•
•
•
•
Publication
21677750 | J:173534
First Author: Skarnes WC
Year: 2011
Journal: Nature
Title: A conditional knockout resource for the genome-wide study of mouse gene function.
Volume: 474
Issue: 7351
Pages: 337-42
•
•
•
•
•
Publication
- | J:60000
       
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
•
•
•
•
•
Publication
- | J:68900
     
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
•
•
•
•
•
Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
•
•
•
•
•
Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
•
•
•
•
•
Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
•
•
•
•
•
Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
•
•
•
•
•
Publication
- | J:57747
     
First Author: MGI Genome Annotation Group and UniGene Staff
Year: 2015
Journal: Database Download
Title: MGI-UniGene Interconnection Effort
•
•
•
•
•
Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
•
•
•
•
•
Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
•
•
•
•
•
Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
•
•
•
•
•
Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
•
•
•
•
•
Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
•
•
•
•
•
Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
•
•
•
•
•
Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
•
•
•
•
•
Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
•
•
•
•
•
Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
•
•
•
•
•
Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
•
•
•
•
•
Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
•
•
•
•
•
Publication
14724229 | -
First Author: Liu Y
Year: 2004
Journal: J Neurosci
Title: Semaphorin3D guides retinal axons along the dorsoventral axis of the tectum.
Volume: 24
Issue: 2
Pages: 310-8
•
•
•
•
•
Publication
16971468 | -
First Author: Berndt JD
Year: 2006
Journal: Development
Title: Semaphorin 3d promotes cell proliferation and neural crest cell development downstream of TCF in the zebrafish hindbrain.
Volume: 133
Issue: 20
Pages: 3983-92
•
•
•
•
•
Protein Domain
IPR042582 | Sema3D_Sema
Type: Domain
Description: Semaphorin-3D (Sema3D) is a secreted semaphorin expressed during the development of the nervous system []. In zebrafish, Sema3D is expressed in the ventral tectum []. It guides retinal axons along the dorsoventral axis of the tectum and guides the laterality of retinal ganglion cell (RGC) projections. Both Sema3D knockdown or its ubiquitous overexpression induced aberrant ipsilateral projections. Proper balance of Sema3D is needed at the midline for the progression of RGC axons from the chiasm midline into the contralateral optic tract []. Sema3D is a member of the class 3 semaphorin family of proteins. Semaphorins are regulatory molecules in the development of the nervous system and in axonal guidance. They also play important roles in other biological processes, such as angiogenesis, immune regulation, respiration systems and cancer [, ]. The Sema domain is located at the N terminus and contains four disulfide bonds formed by eight conserved cysteine residues. It serves as a receptor-recognition and -binding module.
•
•
•
•
•
Allele
Sema3d<tm2.1(GFP/cre)Joe> | MGI:5317896
Name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D; targeted mutation 2.1, Jonthan Epstein
Allele Type: Targeted
Attribute String: Recombinase
•
•
•
•
•
Strain
MGI:5776562 | STOCK Sema3d<tm2.1(GFP/cre)Joe>/J
Attribute String: mutant stock
•
•
•
•
•
Genotype
Genotype
Symbol: Sema3d/Sema3d
Background: involves: 129S6/SvEvTac * C57BL/6
Zygosity: hm
Has Mutant Allele: true
•
•
•
•
•
Genotype
Genotype
Symbol: Sema3d/Sema3d<+>
Background: involves: 129S6/SvEvTac * C57BL/6
Zygosity: ht
Has Mutant Allele: true
•
•
•
•
•
Publication
15914725 | -
First Author: Potiron V
Year: 2005
Journal: Sci STKE
Title: Class 3 semaphorin signaling: the end of a dogma.
Volume: 2005
Issue: 285
Pages: pe24
•
•
•
•
•
Publication
19887479 | -
First Author: Gaur P
Year: 2009
Journal: Clin Cancer Res
Title: Role of class 3 semaphorins and their receptors in tumor growth and angiogenesis.
Volume: 15
Issue: 22
Pages: 6763-70
•
•
•
•
•
HT Experiment
GSE22034 | Transcriptional profiling of ex vivo isolated mouse blood vascular and lymphatic endothelial cells
Series Id: E-GEOD-22034
Experiment Type: transcription profiling by array
Study Type: Baseline
Source: GEO
•
•
•
•
•
Protein
A0A0G2JDP8
Organism: Mus musculus/domesticus
Length: 660  
Fragment?: false
•
•
•
•
•
Publication
22723300 | J:212889
First Author: Jurisic G
Year: 2012
Journal: Circ Res
Title: An unexpected role of semaphorin3a-neuropilin-1 signaling in lymphatic vessel maturation and valve formation.
Volume: 111
Issue: 4
Pages: 426-36
•
•
•
•
•
Protein
Q8BH34
Organism: Mus musculus/domesticus
Length: 777  
Fragment?: false
•
•
•
•
•
Protein
Q8BMF6
Organism: Mus musculus/domesticus
Length: 777  
Fragment?: false
•
•
•
•
•
Publication
31163177 | J:346762
First Author: Jurcak NR
Year: 2019
Journal: Gastroenterology
Title: Axon Guidance Molecules Promote Perineural Invasion and Metastasis of Orthotopic Pancreatic Tumors in Mice.
Volume: 157
Issue: 3
Pages: 838-850.e6
•
•
•
•
•




MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

Copyright © 2017 by The Jackson Laboratory. All Rights Reserved

© 2002 - 2017 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom