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Search results 301 to 400 out of 437 for Setdb1

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Type Details Score
Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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Publication
12869583 | -
First Author: Ayyanathan K
Year: 2003
Journal: Genes Dev
Title: Regulated recruitment of HP1 to a euchromatic gene induces mitotically heritable, epigenetic gene silencing: a mammalian cell culture model of gene variegation.
Volume: 17
Issue: 15
Pages: 1855-69
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Protein Domain
IPR025796 | Hist-Lys_N-MeTrfase_SETDB1
Type: Family
Description: SETDB1 is a member of the histone-lysine N-methyltransferase Suvar3-9 subfamily. Members of this subfamily trimethylate 'Lys-9' of histone H3. H3 'Lys-9' trimethylation represents a specific tag for epigenetic transcriptional repression by recruiting HP1 (CBX1, CBX3 and/or CBX5) proteins to methylated histones []. This enzyme mainly functions in euchromatin regions, thereby playing a central role in the silencing of euchromatic genes. H3 'Lys-9' trimethylation is coordinated with DNA methylation. It probably forms a complex with MBD1 and ATF7IP that represses transcription and couples DNA methylation and histone 'Lys-9' trimethylation [].Methyltransferases (EC [intenz:2.1.1.-]) constitute an important class of enzymes present in every life form. They transfer a methyl group most frequently from S-adenosyl L-methionine (SAM or AdoMet) to a nucleophilic acceptor such as oxygen leading to S-adenosyl-L-homocysteine (AdoHcy) and a methylated molecule [, , ]. All these enzymes have in common a conserved region of about 130 amino acid residues that allow them to bind SAM []. The substrates that are methylated by these enzymes cover virtually every kind of biomolecules ranging from small molecules, to lipids, proteins and nucleic acids [, , ]. Methyltransferase are therefore involved in many essential cellular processes including biosynthesis, signal transduction, protein repair, chromatin regulation and gene silencing [, , ]. More than 230 families of methyltransferases have been described so far, of which more than 220 use SAM as the methyl donor.
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HT Experiment
E-GEOD-82002 | The methyltransferase Setdb1 is essential for meiosis and mitosis in mouse oocytes and early embryo
Series Id: GSE82002
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: ArrayExpress
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Publication
30692625 | J:282870
First Author: Guo J
Year: 2019
Journal: Nat Cell Biol
Title: AKT methylation by SETDB1 promotes AKT kinase activity and oncogenic functions.
Volume: 21
Issue: 2
Pages: 226-237
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Protein
O88974-3
Organism: Mus musculus/domesticus
Length: 500  
Fragment?: false
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Protein
O88974-2
Organism: Mus musculus/domesticus
Length: 488  
Fragment?: false
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Protein
O88974-5
Organism: Mus musculus/domesticus
Length: 526  
Fragment?: false
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Protein
O88974-6
Organism: Mus musculus/domesticus
Length: 527  
Fragment?: false
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Protein
O88974-7
Organism: Mus musculus/domesticus
Length: 755  
Fragment?: false
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Protein
O88974-4
Organism: Mus musculus/domesticus
Length: 1308  
Fragment?: false
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HT Experiment
GSE60377 | Setdb1 is required for persistence of H3K9me3 and repression of endogenous retroviruses in mouse primordial germ cells
Series Id: E-GEOD-60377
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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Interaction Experiment
Cho S (2012)
Description: Dynamics of Setdb1 expression in early mouse development.
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Publication
28420800 | -
First Author: Liu T
Year: 2017
Journal: Reproduction
Title: SETDB1 plays an essential role in maintenance of gonocyte survival in pigs.
Volume: 154
Issue: 1
Pages: 23-34
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Publication
14536086 | -
First Author: Wang H
Year: 2003
Journal: Mol Cell
Title: mAM facilitates conversion by ESET of dimethyl to trimethyl lysine 9 of histone H3 to cause transcriptional repression.
Volume: 12
Issue: 2
Pages: 475-87
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Publication
25070049 | J:218476
First Author: Zhang H
Year: 2014
Journal: Stem Cells
Title: MiR-7, inhibited indirectly by lincRNA HOTAIR, directly inhibits SETDB1 and reverses the EMT of breast cancer stem cells by downregulating the STAT3 pathway.
Volume: 32
Issue: 11
Pages: 2858-68
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Publication
27798683 | -
First Author: Ishimoto K
Year: 2016
Journal: PLoS One
Title: Ubiquitination of Lysine 867 of the Human SETDB1 Protein Upregulates Its Histone H3 Lysine 9 (H3K9) Methyltransferase Activity.
Volume: 11
Issue: 10
Pages: e0165766
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Allele
Setdb1<tm1Smoc> | MGI:7292266
Name: SET domain, bifurcated 1; targeted mutation 1, Shanghai Model Organisms Center
Allele Type: Targeted
Attribute String: Conditional ready, No functional change
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Publication
21430779 | -
First Author: Ceol CJ
Year: 2011
Journal: Nature
Title: The histone methyltransferase SETDB1 is recurrently amplified in melanoma and accelerates its onset.
Volume: 471
Issue: 7339
Pages: 513-7
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Publication
29774127 | -
First Author: Ropa J
Year: 2018
Journal: Oncotarget
Title: PAF1 complex interactions with SETDB1 mediate promoter H3K9 methylation and transcriptional repression of Hoxa9 and Meis1 in acute myeloid leukemia.
Volume: 9
Issue: 31
Pages: 22123-22136
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Protein
Q5DTW7
Organism: Mus musculus/domesticus
Length: 1521  
Fragment?: false
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Protein
Q8CFR7
Organism: Mus musculus/domesticus
Length: 230  
Fragment?: true
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Protein
B2KFD0
Organism: Mus musculus/domesticus
Length: 170  
Fragment?: true
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Protein
A0A087WP74
Organism: Mus musculus/domesticus
Length: 1519  
Fragment?: false
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Protein
A0A087WP47
Organism: Mus musculus/domesticus
Length: 1173  
Fragment?: true
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Protein
A0A140T8R9
Organism: Mus musculus/domesticus
Length: 404  
Fragment?: true
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Protein
A0A087WR65
Organism: Mus musculus/domesticus
Length: 105  
Fragment?: true
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Protein
B2KFD2
Organism: Mus musculus/domesticus
Length: 1521  
Fragment?: false
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Protein Domain
IPR027866 | RESF1
Type: Family
Description: RESF1 is involved in retroelement silencing. It regulates repressive epigenetic modifications associated with SETDB1 [].
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Publication
14522075 | -
First Author: Blackburn ML
Year: 2003
Journal: Biochim Biophys Acta
Title: Genomic structure and expression of the mouse ESET gene encoding an ERG-associated histone methyltransferase with a SET domain.
Volume: 1629
Issue: 1-3
Pages: 8-14
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Allele
Gt(ROSA)26Sor<tm2(Setdb1)Aiwa> | MGI:6477610
Name: gene trap ROSA 26, Philippe Soriano; targeted mutation 2, Atsushi Iwama
Allele Type: Targeted
Attribute String: Conditional ready, Inserted expressed sequence, Reporter
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Strain
MGI:6355174 | C57BL/6JSmoc-Setdb1<tm1Smoc>/Smoc
Attribute String: coisogenic, mutant strain, targeted mutation
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Protein Domain
IPR040880 | DUF5604
Type: Domain
Description: This domain is often found in the N-terminal region of proteins carrying the SET domain, such as the SETDB1 protein from Humans. SETDB1 is a histone methyltransferase that suppresses gene expression and modulates heterochromatin formation through H3K9me2/3 [].
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HT Experiment
GSE77636 | Retrotransposon derepression leads to activation of the unfolded protein response and apoptosis in pro B cells
Series Id: E-GEOD-77636
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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Strain
MGI:6147068 | B6.Cg-Gt(ROSA)26Sor<tm2(Setdb1)Aiwa>/Rbrc
Attribute String: mutant strain, congenic, targeted mutation
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Protein Domain
IPR041292 | Tudor_4
Type: Domain
Description: This is the second TUDOR domain found in SETDB1 enzymes () from mammals, also known as Eggless in Drosophila []. In Drosophila, SetdB1 (Egg) is important for oogenesis and the silencing of chromosome 4 []. SET domain, bifurcated 1 (SETDB1) is a histone methyltransferase (HMT) that methylates lysine 9 on histone H3 (H3K9). The enzymatic activity of SETDB1, in association with MBD1-containing chromatin-associated factor 1 (MCAF1), converts H3K9me2 to H3K9me3 and represses subsequent transcription. SETDB1 is amplified in cancers such as melanoma and lung cancer, and increased expression of SETDB1 promotes tumorigenesis in a zebrafish melanoma model. In addition, SETDB1 is required for endogenous retrovirus silencing during early embryogenesis, inhibition of adipocyte differentiation, and differentiation of mesenchymal cells into osteoblasts []. The tandem Tudor domains in the N-terminal region are involved in protein-protein interactions [].
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Protein Domain
IPR041291 | TUDOR_5
Type: Domain
Description: This is the first TUDOR domain found in SETDB1 enzymes () from animals, also known as Eggless in Drosophila []. In Drosophila, SetdB1 (Egg) is important for oogenesis and the silencing of chromosome 4 []. SET domain, bifurcated 1 (SETDB1) is a histone methyltransferase (HMT) that methylates lysine 9 on histone H3 (H3K9). The enzymatic activity of SETDB1, in association with MBD1-containing chromatin-associated factor 1 (MCAF1), converts H3K9me2 to H3K9me3 and represses subsequent transcription. SETDB1 is amplified in cancers such as melanoma and lung cancer, and increased expression of SETDB1 promotes tumorigenesis in a zebrafish melanoma model. In addition, SETDB1 is required for endogenous retrovirus silencing during early embryogenesis, inhibition of adipocyte differentiation, and differentiation of mesenchymal cells into osteoblasts []. The tandem Tudor domains in the N-terminal region are involved in protein-protein interactions [].
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Publication
26296461 | -
First Author: Tachibana K
Year: 2015
Journal: Biochem Biophys Res Commun
Title: Analysis of the subcellular localization of the human histone methyltransferase SETDB1.
Volume: 465
Issue: 4
Pages: 725-31
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HT Experiment
GSE139126 | Dominant role of DNA methylation over H3K9me3 in ERV silencing during embryonic endoderm development [RNA-Seq]
 
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
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Publication
7897657 | -
First Author: Schluckebier G
Year: 1995
Journal: J Mol Biol
Title: Universal catalytic domain structure of AdoMet-dependent methyltransferases.
Volume: 247
Issue: 1
Pages: 16-20
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Publication
16225687 | -
 
First Author: Kozbial PZ
Year: 2005
Journal: BMC Struct Biol
Title: Natural history of S-adenosylmethionine-binding proteins.
Volume: 5
Pages: 19
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Publication
21858014 | -
First Author: Wlodarski T
Year: 2011
Journal: PLoS One
Title: Comprehensive structural and substrate specificity classification of the Saccharomyces cerevisiae methyltransferome.
Volume: 6
Issue: 8
Pages: e23168
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Publication
31112734 | J:282162
First Author: Gresakova V
Year: 2019
Journal: Exp Cell Res
Title: Fam208a orchestrates interaction protein network essential for early embryonic development and cell division.
Volume: 382
Issue: 1
Pages: 111437
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Publication
12826405 | -
First Author: Schubert HL
Year: 2003
Journal: Trends Biochem Sci
Title: Many paths to methyltransfer: a chronicle of convergence.
Volume: 28
Issue: 6
Pages: 329-35
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Protein
A0A1Y7VM81
Organism: Mus musculus/domesticus
Length: 51  
Fragment?: true
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Protein
Q3TNP4
Organism: Mus musculus/domesticus
Length: 745  
Fragment?: false
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Protein
A0A286YDQ5
Organism: Mus musculus/domesticus
Length: 293  
Fragment?: true
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Protein Domain
IPR046432 | TASOR
Type: Family
Description: TASOR is a key component of the HUSH complex, a vertebrate-specific multiprotein complex that mediates epigenetic repression of both exogenous and endogenous genetic elements [, , ]. The HUSH complex regulates H3K9me3 deposition by promoting recruitment of SETDB1 and also recruits MORC2 to compact chromatin [, , ]. The HUSH complex represses L1 retrotransposons and is also involved in the silencing of unintegrated retroviral DNA by being recruited by ZNF638: some part of the retroviral DNA formed immediately after infection remains unintegrated in the host genome and is transcriptionally repressed []. TASOR is crucial in early embryonic development [], and contains a catalytically-inactive PARP domain, necessary for epigenetic regulation of target elements.
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Publication
30487602 | -
First Author: Zhu Y
Year: 2018
Journal: Nature
Title: NP220 mediates silencing of unintegrated retroviral DNA.
Volume: 564
Issue: 7735
Pages: 278-282
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Publication
28839193 | J:254597
First Author: Bhargava S
Year: 2017
Journal: Sci Rep
Title: The epigenetic modifier Fam208a is required to maintain epiblast cell fitness.
Volume: 7
Issue: 1
Pages: 9322
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Protein
Q69ZR9
Organism: Mus musculus/domesticus
Length: 1610  
Fragment?: false
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Protein
A0A1Y7VLA4
Organism: Mus musculus/domesticus
Length: 1701  
Fragment?: true
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Publication
28581500 | -
First Author: Tchasovnikarova IA
Year: 2017
Journal: Nat Genet
Title: Hyperactivation of HUSH complex function by Charcot-Marie-Tooth disease mutation in MORC2.
Volume: 49
Issue: 7
Pages: 1035-1044
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Publication
29211708 | -
First Author: Liu N
Year: 2018
Journal: Nature
Title: Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators.
Volume: 553
Issue: 7687
Pages: 228-232
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Publication
33009411 | -
First Author: Douse CH
Year: 2020
Journal: Nat Commun
Title: TASOR is a pseudo-PARP that directs HUSH complex assembly and epigenetic transposon control.
Volume: 11
Issue: 1
Pages: 4940
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Publication
27317259 | J:259057
First Author: Xiao X
Year: 2016
Journal: Immunity
Title: The Costimulatory Receptor OX40 Inhibits Interleukin-17 Expression through Activation of Repressive Chromatin Remodeling Pathways.
Volume: 44
Issue: 6
Pages: 1271-83
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Publication
37453065 | J:338569
First Author: Wu M
Year: 2023
Journal: Cell Rep
Title: Nucleoporin Seh1 maintains Schwann cell homeostasis by regulating genome stability and necroptosis.
Volume: 42
Issue: 7
Pages: 112802
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Publication
36332029 | J:332344
First Author: Hagelkruys A
Year: 2022
Journal: Sci Adv
Title: The HUSH complex controls brain architecture and protocadherin fidelity.
Volume: 8
Issue: 44
Pages: eabo7247
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Publication
25105474 | J:274172
 
First Author: Pereira RM
Year: 2014
Journal: Nat Commun
Title: Jarid2 is induced by TCR signalling and controls iNKT cell maturation.
Volume: 5
Pages: 4540
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Publication
25512341 | J:340229
First Author: Bao X
Year: 2015
Journal: Cell Res
Title: The p53-induced lincRNA-p21 derails somatic cell reprogramming by sustaining H3K9me3 and CpG methylation at pluripotency gene promoters.
Volume: 25
Issue: 1
Pages: 80-92
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Protein Domain
IPR022188 | TASOR_DUF3715
Type: Domain
Description: This domain is found in eukaryotes, and is approximately 170 amino acids in length. Proteins containing this domain include TASOR and TASOR 2 (also known as FAM208A/B) proteins []. TASOR is a key component of the HUSH complex, a vertebrate-specific multiprotein complex that mediates epigenetic repression of both exogenous and endogenous genetic elements [, , ]. The HUSH complex regulates H3K9me3 deposition by promoting recruitment of SETDB1 and also recruits MORC2 to compact chromatin [, , ]. The HUSH complex represses L1 retrotransposons and is also involved in the silencing of unintegrated retroviral DNA by being recruited by ZNF638: some part of the retroviral DNA formed immediately after infection remains unintegrated in the host genome and is transcriptionally repressed []. TASOR is crucial in early embryonic development [], and contains a catalytically-inactive PARP domain, necessary for epigenetic regulation of target elements.
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Publication
26022416 | -
First Author: Tchasovnikarova IA
Year: 2015
Journal: Science
Title: GENE SILENCING. Epigenetic silencing by the HUSH complex mediates position-effect variegation in human cells.
Volume: 348
Issue: 6242
Pages: 1481-1485
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Publication
36901736 | J:337485
 
First Author: Hu G
Year: 2023
Journal: Int J Mol Sci
Title: Atf7ip Inhibits Osteoblast Differentiation via Negative Regulation of the Sp7 Transcription Factor.
Volume: 24
Issue: 5
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Publication
20116374 | J:309453
First Author: Nifuji A
Year: 2010
Journal: Exp Cell Res
Title: Nemo-like kinase (NLK) expression in osteoblastic cells and suppression of osteoblastic differentiation.
Volume: 316
Issue: 7
Pages: 1127-36
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Protein
Q5DTT3
Organism: Mus musculus/domesticus
Length: 2382  
Fragment?: false
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Protein
Q3TAG2
Organism: Mus musculus/domesticus
Length: 163  
Fragment?: false
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Protein
E9PY31
Organism: Mus musculus/domesticus
Length: 1279  
Fragment?: true
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Protein
D3YVF5
Organism: Mus musculus/domesticus
Length: 148  
Fragment?: true
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Protein
M0QWY2
Organism: Mus musculus/domesticus
Length: 323  
Fragment?: false
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Publication
12529184 | -
First Author: Roloff TC
Year: 2003
Journal: BMC Genomics
Title: Comparative study of methyl-CpG-binding domain proteins.
Volume: 4
Issue: 1
Pages: 1
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Protein Domain
IPR001739 | Methyl_CpG_DNA-bd
Type: Domain
Description: Methylation at CpG dinucleotide, the most common DNA modification ineukaryotes, has been correlated with gene silencing associated with variousphenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ].The MBD folds into an alpha/beta sandwich structure comprising a layer oftwisted beta sheet, backed by another layer formed by the alpha1 helix and ahairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].
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Publication
25938714 | J:222251
First Author: Elsässer SJ
Year: 2015
Journal: Nature
Title: Histone H3.3 is required for endogenous retroviral element silencing in embryonic stem cells.
Volume: 522
Issue: 7555
Pages: 240-244
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Protein
B1AYB6
Organism: Mus musculus/domesticus
Length: 1498  
Fragment?: false
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Protein
Q3TU27
Organism: Mus musculus/domesticus
Length: 365  
Fragment?: false
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Protein
Q69ZJ2
Organism: Mus musculus/domesticus
Length: 1753  
Fragment?: true
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Protein
A0A0N4SWA0
Organism: Mus musculus/domesticus
Length: 386  
Fragment?: false
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Protein
Q3UG18
Organism: Mus musculus/domesticus
Length: 386  
Fragment?: false
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Protein
B4XVP4
Organism: Mus musculus/domesticus
Length: 241  
Fragment?: false
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Protein
B1AYB5
Organism: Mus musculus/domesticus
Length: 1728  
Fragment?: false
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Protein
Q8BUR7
Organism: Mus musculus/domesticus
Length: 102  
Fragment?: true
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Publication
11371345 | J:69464
First Author: Ohki I
Year: 2001
Journal: Cell
Title: Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA.
Volume: 105
Issue: 4
Pages: 487-97
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Protein
Q9Z2D8
Organism: Mus musculus/domesticus
Length: 285  
Fragment?: false
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Protein
Q9Z2E1
Organism: Mus musculus/domesticus
Length: 414  
Fragment?: false
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Protein
Q9Z2D6
Organism: Mus musculus/domesticus
Length: 484  
Fragment?: false
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Protein
Q3TY92
Organism: Mus musculus/domesticus
Length: 1003  
Fragment?: false
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Protein
D3YY81
Organism: Mus musculus/domesticus
Length: 172  
Fragment?: false
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Protein
D3YV97
Organism: Mus musculus/domesticus
Length: 130  
Fragment?: true
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Protein
Q8BRP6
Organism: Mus musculus/domesticus
Length: 181  
Fragment?: true
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Protein
D3Z7U4
Organism: Mus musculus/domesticus
Length: 189  
Fragment?: false
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Protein
D3YTR5
Organism: Mus musculus/domesticus
Length: 261  
Fragment?: false
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Protein
Q3V0H2
Organism: Mus musculus/domesticus
Length: 764  
Fragment?: true
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MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

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