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Search results 301 to 354 out of 354 for Syncrip

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Type Details Score
Publication
- | J:60000
       
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
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Publication
- | J:68900
     
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
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Publication
12466851 | J:80000
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
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Publication
- | J:164563
       
First Author: The Gene Ontology Consortium
Year: 2010
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
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Publication
21267068 | J:153498
First Author: Diez-Roux G
Year: 2011
Journal: PLoS Biol
Title: A high-resolution anatomical atlas of the transcriptome in the mouse embryo.
Volume: 9
Issue: 1
Pages: e1000582
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Publication
- | J:75000
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
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Publication
- | J:157972
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
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Publication
- | J:161428
       
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
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Publication
- | J:63103
     
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
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Publication
- | J:262123
     
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
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Publication
- | J:144086
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
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Publication
- | J:155721
     
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
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Publication
- | J:85324
     
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
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Publication
- | J:53168
     
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
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Publication
- | J:91388
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
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Publication
- | J:155221
     
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
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Publication
- | J:90438
       
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
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Publication
- | J:144087
     
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
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Publication
19232660 | -
First Author: Liu HM
Year: 2009
Journal: Virology
Title: SYNCRIP (synaptotagmin-binding, cytoplasmic RNA-interacting protein) is a host factor involved in hepatitis C virus RNA replication.
Volume: 386
Issue: 2
Pages: 249-56
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Publication
15475564 | -
First Author: Bannai H
Year: 2004
Journal: J Biol Chem
Title: An RNA-interacting protein, SYNCRIP (heterogeneous nuclear ribonuclear protein Q1/NSAP1) is a component of mRNA granule transported with inositol 1,4,5-trisphosphate receptor type 1 mRNA in neuronal dendrites.
Volume: 279
Issue: 51
Pages: 53427-34
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GO Term
GO:0097452 | GAIT complex
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Protein
V9GWW3
Organism: Mus musculus/domesticus
Length: 103  
Fragment?: false
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Protein
A2AW40
Organism: Mus musculus/domesticus
Length: 73  
Fragment?: true
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Protein
G3XA76
Organism: Mus musculus/domesticus
Length: 94  
Fragment?: true
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Publication
27081926 | -
First Author: Beuck C
Year: 2016
Journal: Protein Sci
Title: The acidic domain is a unique structural feature of the splicing factor SYNCRIP.
Volume: 25
Issue: 8
Pages: 1545-50
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Protein Domain
IPR041337 | hnRNP_Q_AcD
Type: Domain
Description: This is an acidic sequence segment domain found in the splicing factor SYNCRIP (hnRNP Q) which is involved in viral replication, neural morphogenesis, modulation of circadian oscillation and the regulation of the cytidine deaminase APOBEC1. This domain is a self-folding globular domain with an all α-helix architecture with negatively charged surface areas. Additionally it contains a large hydrophobic cavity and a positively charged surface area as potential epitopes for inter-molecular interactions [].
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Publication
11994298 | -
First Author: Hresko RC
Year: 2002
Journal: J Biol Chem
Title: Identification of pp68 as the Tyrosine-phosphorylated Form of SYNCRIP/NSAP1. A cytoplasmic RNA-binding protein.
Volume: 277
Issue: 28
Pages: 25233-8
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Publication
11352648 | -
First Author: Lau PP
Year: 2001
Journal: Biochem Biophys Res Commun
Title: Two-hybrid cloning identifies an RNA-binding protein, GRY-RBP, as a component of apobec-1 editosome.
Volume: 282
Issue: 4
Pages: 977-83
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Publication
18794368 | J:142591
First Author: Chen HH
Year: 2008
Journal: Mol Cell Biol
Title: The RNA binding protein hnRNP Q modulates the utilization of exon 7 in the survival motor neuron 2 (SMN2) gene.
Volume: 28
Issue: 22
Pages: 6929-38
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Publication
17010310 | -
First Author: Quaresma AJ
Year: 2006
Journal: Biochem Biophys Res Commun
Title: The acidic domain of hnRNPQ (NSAP1) has structural similarity to Barstar and binds to Apobec1.
Volume: 350
Issue: 2
Pages: 288-97
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Protein Domain
IPR034544 | hnRNPQ_RRM1
Type: Domain
Description: This entry represents the RNA recognition motif 1 (RRM1) of heterogeneous nuclear ribonucleoprotein Q (hnRNP Q).hnRNP Q (also known as NSAP1 or GRY-RBP) is a RNA-binding protein found in the spliceosome complex and the apobec-1 editosome [, ]. It acts as an interaction partner of a multifunctional protein required for viral replication, and is implicated in the regulation of specific mRNA transport []. hnRNP Q has also been identified as SYNCRIP (synaptotagmin-binding, cytoplasmic RNA-interacting protein), a dual functional protein participating in both viral RNA replication and translation [, ]. As a synaptotagmin-binding protein, hnRNP Q plays a putative role in organelle-based mRNA transport along the cytoskeleton []. Moreover, hnRNP Q has been found in protein complexes involved in translationally coupled mRNA turnover and mRNA splicing. It functions as a wild-type survival motor neuron (SMN)-binding protein that may participate in pre-mRNA splicing and modulate mRNA transport along microtubuli [].hnRNP Q contains an acidic auxiliary N-terminal region, followed by two well-defined and one degenerated RNA recognition motifs (RRMs), and a C-terminal RGG motif; hnRNP Q binds RNA through its RRM domains [].
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Protein Domain
IPR034548 | hnRNPQ_RRM2
Type: Domain
Description: This entry representsthe RNA recognition motif 2 (RRM2) of heterogeneous nuclear ribonucleoprotein Q (hnRNP Q).hnRNP Q (also known as NSAP1 or GRY-RBP) is a RNA-binding protein found in the spliceosome complex and the apobec-1 editosome [, ]. It acts as an interaction partner of a multifunctional protein required for viral replication, and is implicated in the regulation of specific mRNA transport []. hnRNP Q has also been identified as SYNCRIP (synaptotagmin-binding, cytoplasmic RNA-interacting protein), a dual functional protein participating in both viral RNA replication and translation [, ]. As a synaptotagmin-binding protein, hnRNP Q plays a putative role in organelle-based mRNA transport along the cytoskeleton []. Moreover, hnRNP Q has been found in protein complexes involved in translationally coupled mRNA turnover and mRNA splicing. It functions as a wild-type survival motor neuron (SMN)-binding protein that may participate in pre-mRNA splicing and modulate mRNA transport along microtubuli [].hnRNP Q contains an acidic auxiliary N-terminal region, followed by two well-defined and one degenerated RNA recognition motifs (RRMs), and a C-terminal RGG motif; hnRNP Q binds RNA through its RRM domains [].
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Publication
9847309 | -
First Author: Harris CE
Year: 1999
Journal: J Virol
Title: A novel heterogeneous nuclear ribonucleoprotein-like protein interacts with NS1 of the minute virus of mice.
Volume: 73
Issue: 1
Pages: 72-80
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Protein
Q7TMK9
Organism: Mus musculus/domesticus
Length: 623  
Fragment?: false
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Protein
A0A0R4J259
Organism: Mus musculus/domesticus
Length: 561  
Fragment?: false
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Protein Coding Gene
MGI:97838 | Eprs1
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGI:1351455 | Rpl13a
Type: protein_coding_gene
Organism: mouse, laboratory
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Pseudogene
MGI:5434255 | Gapdh-ps15
Type: pseudogene
Organism: mouse, laboratory
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Protein
G3UZ48
Organism: Mus musculus/domesticus
Length: 464  
Fragment?: false
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Protein
G3V018
Organism: Mus musculus/domesticus
Length: 588  
Fragment?: false
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Protein
G3UZI2
Organism: Mus musculus/domesticus
Length: 527  
Fragment?: false
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Protein
A2AW41
Organism: Mus musculus/domesticus
Length: 270  
Fragment?: true
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Protein
G3UWM1
Organism: Mus musculus/domesticus
Length: 196  
Fragment?: true
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Protein
G3UXJ6
Organism: Mus musculus/domesticus
Length: 448  
Fragment?: false
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Protein Coding Gene
MGI:3782011 | Gapdhrt
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein Coding Gene
MGI:3708786 | Gapdhrt2
Type: protein_coding_gene
Organism: mouse, laboratory
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Protein
Q3UMT8
Organism: Mus musculus/domesticus
Length: 632  
Fragment?: false
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Protein
Q8VHM5
Organism: Mus musculus/domesticus
Length: 632  
Fragment?: false
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Protein
Q3UKV5
Organism: Mus musculus/domesticus
Length: 610  
Fragment?: true
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Protein
Q9CT37
Organism: Mus musculus/domesticus
Length: 381  
Fragment?: true
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Protein
Q3U8W9
Organism: Mus musculus/domesticus
Length: 632  
Fragment?: false
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Protein
Q3UZI0
Organism: Mus musculus/domesticus
Length: 604  
Fragment?: true
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Protein
Q99KG1
Organism: Mus musculus/domesticus
Length: 601  
Fragment?: true
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Protein Coding Gene
MGI:95640 | Gapdh
Type: protein_coding_gene
Organism: mouse, laboratory
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MouseMine is a collaboration between MGI at The Jackson Laboratory and the InterMine project at the Cambridge Systems Biology Centre. MouseMine is funded through a grant from the NIH/NHGRI.The Jackson Laboratory makes no representation about the suitability or accuracy of this software or data for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software or data will not infringe any third party patents, copyrights, trademarks, or other rights. the software and data are provided "as is". This software and data are provided to enhance knowledge and encourage progress in the scientific community and are to be used only for research and educational purposes. Any reproduction or use for commercial purpose is prohibited without the prior express written permission of the Jackson Laboratory.

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