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Search results 301 to 384 out of 384 for Trf

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Type Details Score
Publication  
First Author: Mariani NAP
Year: 2020
Journal: Mol Cell Endocrinol
Title: Epididymal protease inhibitor (EPPIN) is a protein hub for seminal vesicle-secreted protein SVS2 binding in mouse spermatozoa.
Volume: 506
Pages: 110754
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Publication
First Author: Chiesa G
Year: 1992
Journal: J Biol Chem
Title: Reconstitution of lipoprotein(a) by infusion of human low density lipoprotein into transgenic mice expressing human apolipoprotein(a).
Volume: 267
Issue: 34
Pages: 24369-74
Publication
First Author: Lawn RM
Year: 1992
Journal: Nature
Title: Atherogenesis in transgenic mice expressing human apolipoprotein(a)
Volume: 360
Issue: 6405
Pages: 670-2
Publication
First Author: Lawn RM
Year: 1996
Journal: J Biol Chem
Title: Feedback mechanism of focal vascular lesion formation in transgenic apolipoprotein(a) mice.
Volume: 271
Issue: 49
Pages: 31367-71
Allele
Name: transgene insertion IF181, GENSAT Project at Rockefeller University
Allele Type: Transgenic
Attribute String: Reporter
Publication
First Author: Esquivel RN
Year: 2019
Journal: Mol Ther
Title: In Vivo Delivery of a DNA-Encoded Monoclonal Antibody Protects Non-human Primates against Zika Virus.
Volume: 27
Issue: 5
Pages: 974-985
Publication
First Author: Parzych EM
Year: 2022
Journal: Nat Commun
Title: DNA-delivered antibody cocktail exhibits improved pharmacokinetics and confers prophylactic protection against SARS-CoV-2.
Volume: 13
Issue: 1
Pages: 5886
Publication
First Author: Konrath KM
Year: 2022
Journal: Cell Rep
Title: Nucleic acid delivery of immune-focused SARS-CoV-2 nanoparticles drives rapid and potent immunogenicity capable of single-dose protection.
Volume: 38
Issue: 5
Pages: 110318
Strain
Attribute String: mutant stock, transgenic
Publication
First Author: Lou XJ
Year: 1998
Journal: Proc Natl Acad Sci U S A
Title: Fibrinogen deficiency reduces vascular accumulation of apolipoprotein(a) and development of atherosclerosis in apolipoprotein(a) transgenic mice.
Volume: 95
Issue: 21
Pages: 12591-5
Publication
First Author: Oh YS
Year: 1987
Journal: Jikken Dobutsu
Title: Linkage of faded gene (fe) to chromosome 6 of the mouse.
Volume: 36
Issue: 1
Pages: 73-7
HT Experiment
Series Id: GSE13062
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
Publication
First Author: Linton MF
Year: 1993
Journal: J Clin Invest
Title: Transgenic mice expressing high plasma concentrations of human apolipoprotein B100 and lipoprotein(a).
Volume: 92
Issue: 6
Pages: 3029-37
Publication
First Author: Callow MJ
Year: 1995
Journal: J Clin Invest
Title: Atherogenesis in transgenic mice with human apolipoprotein B and lipoprotein (a).
Volume: 96
Issue: 3
Pages: 1639-46
Protein
Organism: Mus musculus/domesticus
Length: 179  
Fragment?: true
Publication
First Author: Chong L
Year: 1995
Journal: Science
Title: A human telomeric protein.
Volume: 270
Issue: 5242
Pages: 1663-7
Publication
First Author: Fairall L
Year: 2001
Journal: Mol Cell
Title: Structure of the TRFH dimerization domain of the human telomeric proteins TRF1 and TRF2.
Volume: 8
Issue: 2
Pages: 351-61
Publication
First Author: Cooper JP
Year: 1997
Journal: Nature
Title: Regulation of telomere length and function by a Myb-domain protein in fission yeast.
Volume: 385
Issue: 6618
Pages: 744-7
Protein Domain
Type: Homologous_superfamily
Description: Telomeres function to shield chromosome ends from degradation and end-to-end fusions, as well as preventing the activation of DNA damage checkpoints. Telomeric repeat binding factor (TRF) proteins TRF1 and TRF2 are major components of vertebrate telomeres required for regulation of telomere stability. TRF1 and TRF2 bind to telomeric DNA as homodimers. Dimerisation involves the TRF homology (TRFH) subdomain contained within the dimerisation domain. The TRFH subdomain is important not only for dimerisation, but for DNA binding, telomere localisation, and interactions with other telomeric proteins. The dimerisation domains of TRF1 and TRF2 show the same multi-helical structure, arranged in a solenoid conformation similar to TPR repeats, which can be divided into an α-α superhelix and a long alpha hairpin [].The two related human TRF proteins hTRF1 and hTRF2 form homodimers and bind directly to telomeric TTAGGG repeats via the myb DNA binding domain at the carboxy terminus []. TRF1 is implicated in telomere length regulation and TRF2 in telomere protection []. Other telomere complex associated proteins are recruited through their interaction with either TRF1 or TRF2. The fission yeast protein Taz1p (telomere-associated in Schizosaccharomyces pombe (Fission yeast) has similarity to both hTRF1 and hTRF2 and may perform the dual functions of TRF1 and TRF2 at fission yeast telomeres []. This entry represents the dimerisation domain.
Protein Domain
Type: Family
Description: This group represents telomeric repeat-binding factors 1 (TERF1, also known as TRF1).Telomeres function to shield chromosome ends from degradation and end-to-end fusions, as well as preventing the activation of DNA damage checkpoints. Telomeric repeat binding factor (TRF) proteins TRF1 and TRF2 are major components of vertebrate telomeres required for regulation of telomere stability. TRF1 and TRF2 bind to telomeric DNA as homodimers. Dimerisation involves the TRF homology (TRFH) subdomain contained within the dimerisation domain. The TRFH subdomain is important not only for dimerisation, but for DNA binding, telomere localisation, and interactions with other telomeric proteins. The dimerisation domains of TRF1 and TRF2 show the same multi-helical structure, arranged in a solenoid conformation similar to TPR repeats, which can be divided into an α-α superhelix and a long alpha hairpin [].The two related human TRF proteins hTRF1 and hTRF2 form homodimers and bind directly to telomeric TTAGGG repeats via the myb DNA binding domain at the carboxy terminus []. TRF1 is implicated in telomere length regulation and TRF2 in telomere protection []. Other telomere complex associated proteins are recruited through their interaction with either TRF1 or TRF2. The fission yeast protein Taz1p (telomere-associated in Schizosaccharomyces pombe (Fission yeast) has similarity to both hTRF1 and hTRF2 and may perform the dual functions of TRF1 and TRF2 at fission yeast telomeres [].
Protein Domain
Type: Family
Description: This entry represents telomeric repeat-binding factor 2 (TERF2, also known as TRF2).Telomeres function to shield chromosome ends from degradation and end-to-end fusions, as well as preventing the activation of DNA damage checkpoints. Telomeric repeat binding factor (TRF) proteins TRF1 and TRF2 are major components of vertebrate telomeres required for regulation of telomere stability. TRF1 and TRF2 bind to telomeric DNA as homodimers. Dimerisation involves the TRF homology (TRFH) subdomain contained within the dimerisation domain. The TRFH subdomain is important not only for dimerisation, but for DNA binding, telomere localisation, and interactions with other telomeric proteins. The dimerisation domains of TRF1 and TRF2 show the same multi-helical structure, arranged in a solenoid conformation similar to TPR repeats, which can be divided into an α-α superhelix and a long alpha hairpin [].The two related human TRF proteins hTRF1 and hTRF2 form homodimers and bind directly to telomeric TTAGGG repeats via the myb DNA binding domain at the carboxy terminus []. TRF1 is implicated in telomere length regulation and TRF2 in telomere protection []. Other telomere complex associated proteins are recruited through their interaction with either TRF1 or TRF2. The fission yeast protein Taz1p (telomere-associated in Schizosaccharomyces pombe (Fission yeast) has similarity to both hTRF1 and hTRF2 and may perform the dual functions of TRF1 and TRF2 at fission yeast telomeres [].
Protein Domain
Type: Domain
Description: Telomeres function to shield chromosome ends from degradation and end-to-end fusions, as well as preventing the activation of DNA damage checkpoints. Telomeric repeat binding factor (TRF) proteins TRF1 and TRF2 are major components of vertebrate telomeres required for regulation of telomere stability. TRF1 and TRF2 bind to telomeric DNA as homodimers. Dimerisation involves the TRF homology (TRFH) subdomain contained within the dimerisation domain. The TRFH subdomain is important not only for dimerisation, but for DNA binding, telomere localisation, and interactions with other telomeric proteins. The dimerisation domains of TRF1 and TRF2 show the same multi-helical structure, arranged in a solenoid conformation similar to TPR repeats, which can be divided into an α-α superhelix and a long alpha hairpin [].The two related human TRF proteins hTRF1 and hTRF2 form homodimers and bind directly to telomeric TTAGGG repeats via the myb DNA binding domain at the carboxy terminus []. TRF1 is implicated in telomere length regulation and TRF2 in telomere protection []. Other telomere complex associated proteins are recruited through their interaction with either TRF1 or TRF2. The fission yeast protein Taz1p (telomere-associated in Schizosaccharomyces pombe (Fission yeast) has similarity to both hTRF1 and hTRF2 and may perform the dual functions of TRF1 and TRF2 at fission yeast telomeres []. This entry represents the dimerisation domain.
Publication
First Author: Sanan DA
Year: 1998
Journal: Proc Natl Acad Sci U S A
Title: Low density lipoprotein receptor-negative mice expressing human apolipoprotein B-100 develop complex atherosclerotic lesions on a chow diet: no accentuation by apolipoprotein(a).
Volume: 95
Issue: 8
Pages: 4544-9
Publication
First Author: Patel KM
Year: 2015
Journal: Circ Res
Title: Macrophage sortilin promotes LDL uptake, foam cell formation, and atherosclerosis.
Volume: 116
Issue: 5
Pages: 789-96
Publication
First Author: Kassim SH
Year: 2010
Journal: PLoS One
Title: Gene therapy in a humanized mouse model of familial hypercholesterolemia leads to marked regression of atherosclerosis.
Volume: 5
Issue: 10
Pages: e13424
HT Experiment  
Experiment Type: RNA-Seq
Study Type: Baseline
Source: GEO
Publication
First Author: Crowley TE
Year: 1993
Journal: Nature
Title: A new factor related to TATA-binding protein has highly restricted expression patterns in Drosophila.
Volume: 361
Issue: 6412
Pages: 557-61
Publication
First Author: Marsh TL
Year: 1994
Journal: Proc Natl Acad Sci U S A
Title: Transcription factor IID in the Archaea: sequences in the Thermococcus celer genome would encode a product closely related to the TATA-binding protein of eukaryotes.
Volume: 91
Issue: 10
Pages: 4180-4
Publication
First Author: Sbodio JI
Year: 2002
Journal: J Biol Chem
Title: Identification of a tankyrase-binding motif shared by IRAP, TAB182, and human TRF1 but not mouse TRF1. NuMA contains this RXXPDG motif and is a novel tankyrase partner.
Volume: 277
Issue: 35
Pages: 31887-92
Protein Domain
Type: Conserved_site
Description: Transcription factor TFIID (or TATA-binding protein, TBP) []is a generalfactor that plays a major role in the activation of eukaryotic genestranscribed by RNA polymerase II. TFIID binds specifically to the TATA boxpromoter element which lies close to the position of transcription initiation.There is a remarkable degree of sequence conservation of a C-terminal domainof about 180 residues in TFIID from various eukaryotic sources. This region isnecessary and sufficient for TATA box binding. The most significant structuralfeature of this domain is the presence of two conserved repeats of a 77 amino-acid region. The intramolecular symmetry generates a saddle-shaped structurethat sits astride the DNA [].Drosophila TRF (TBP-related factor) []is a sequence-specific transcriptionfactor that also binds to the TATA box and is highly similar to TFIID. Archaebacteria also possess a TBP homologue [].This entry represents a conserved site that spans the last 50 residues of therepeated region.
Publication
First Author: Chaix A
Year: 2019
Journal: Cell Metab
Title: Time-Restricted Feeding Prevents Obesity and Metabolic Syndrome in Mice Lacking a Circadian Clock.
Volume: 29
Issue: 2
Pages: 303-319.e4
Publication
First Author: Williams AS
Year: 2024
Journal: Cell Metab
Title: Ketone flux through BDH1 supports metabolic remodeling of skeletal and cardiac muscles in response to intermittent time-restricted feeding.
Volume: 36
Issue: 2
Pages: 422-437.e8
Publication
First Author: Whittaker DS
Year: 2023
Journal: Cell Metab
Title: Circadian modulation by time-restricted feeding rescues brain pathology and improves memory in mouse models of Alzheimer's disease.
Volume: 35
Issue: 10
Pages: 1704-1721.e6
Publication
First Author: Wan Nasri WN
Year: 2019
Journal: J Alzheimers Dis
Title: Tocotrienol Rich Fraction Supplementation Modulate Brain Hippocampal Gene Expression in APPswe/PS1dE9 Alzheimer's Disease Mouse Model.
Volume: 70
Issue: s1
Pages: S239-S254
Publication
First Author: Hopp K
Year: 2022
Journal: iScience
Title: Weight loss and cystic disease progression in autosomal dominant polycystic kidney disease.
Volume: 25
Issue: 1
Pages: 103697
Publication
First Author: Zhai Q
Year: 2022
Journal: iScience
Title: Time-restricted feeding entrains long-term behavioral changes through the IGF2-KCC2 pathway.
Volume: 25
Issue: 5
Pages: 104267
Publication
First Author: Maccarone P
Year: 1992
Journal: Genomics
Title: The evolution of human chromosome 21: evidence from in situ hybridization in marsupials and a monotreme.
Volume: 13
Issue: 4
Pages: 1119-24
Publication
First Author: Duregon E
Year: 2023
Journal: Cell Metab
Title: Prolonged fasting times reap greater geroprotective effects when combined with caloric restriction in adult female mice.
Volume: 35
Issue: 7
Pages: 1179-1194.e5
Publication      
First Author: Levy JE
Year: 1998
Journal: MGI Direct Data Submission
Title: The Transferrin Receptor (Trfr) maps to mouse Chromosome 16
Protein
Organism: Mus musculus/domesticus
Length: 194  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 142  
Fragment?: true
Publication
First Author: Ye JZ
Year: 2004
Journal: J Biol Chem
Title: TIN2 binds TRF1 and TRF2 simultaneously and stabilizes the TRF2 complex on telomeres.
Volume: 279
Issue: 45
Pages: 47264-71
Protein
Organism: Mus musculus/domesticus
Length: 421  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 476  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 421  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 392  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 541  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 540  
Fragment?: false
Publication
First Author: Ohbayashi T
Year: 1999
Journal: Nucleic Acids Res
Title: Identification of a mouse TBP-like protein (TLP) distantly related to the drosophila TBP-related factor.
Volume: 27
Issue: 3
Pages: 750-5
Publication
First Author: Kinashi T
Year: 1986
Journal: Nature
Title: Cloning of complementary DNA encoding T-cell replacing factor and identity with B-cell growth factor II.
Volume: 324
Issue: 6092
Pages: 70-3
Publication
First Author: Persengiev SP
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: TRF3, a TATA-box-binding protein-related factor, is vertebrate-specific and widely expressed.
Volume: 100
Issue: 25
Pages: 14887-91
Publication
First Author: Levy JE
Year: 1999
Journal: Nat Genet
Title: Transferrin receptor is necessary for development of erythrocytes and the nervous system.
Volume: 21
Issue: 4
Pages: 396-9
Publication  
First Author: Hou T
Year: 2021
Journal: Proc Natl Acad Sci U S A
Title: Time-restricted feeding protects the blood pressure circadian rhythm in diabetic mice.
Volume: 118
Issue: 25
Publication
First Author: Zhang Z
Year: 2020
Journal: Sci Bull (Beijing)
Title: Impaired function of the suprachiasmatic nucleus rescues the loss of body temperature homeostasis caused by time-restricted feeding.
Volume: 65
Issue: 15
Pages: 1268-1280
Publication
First Author: Hua L
Year: 2023
Journal: FASEB J
Title: Liver-derived FGF21 is required for the effect of time-restricted feeding on high-fat diet-induced fatty liver in mice.
Volume: 37
Issue: 5
Pages: e22898
Publication
First Author: Hua L
Year: 2020
Journal: Clin Transl Med
Title: Time-restricted feeding improves the reproductive function of female mice via liver fibroblast growth factor 21.
Volume: 10
Issue: 6
Pages: e195
Publication  
First Author: Jung IR
Year: 2024
Journal: Int J Mol Sci
Title: Time-Restricted Feeding Ameliorates Methionine-Choline Deficient Diet-Induced Steatohepatitis in Mice.
Volume: 25
Issue: 3
Publication  
First Author: Shu YY
Year: 2022
Journal: Oxid Med Cell Longev
Title: Attenuation by Time-Restricted Feeding of High-Fat and High-Fructose Diet-Induced NASH in Mice Is Related to Per2 and Ferroptosis.
Volume: 2022
Pages: 8063897
Publication
First Author: Takatsu K
Year: 1981
Journal: Immunol Lett
Title: X-linked recessive inheritance of a defective responsiveness to T-cell-replacing factor in DBA/2Ha mice.
Volume: 3
Issue: 3
Pages: 137-43
Publication
First Author: Krzanowska H
Year: 1994
Journal: Mol Reprod Dev
Title: Frequency of X-Y chromosome dissociation in mouse spermatocytes from interstrain crosses, recombinant inbred strains, and chimeras: possible involvement of paternal genome imprinting.
Volume: 39
Issue: 4
Pages: 347-54
Publication
First Author: Kiyozuka Y
Year: 1998
Journal: Int J Mol Med
Title: Telomere length, telomerase activity and telomerase RNA expression during mouse mammary tumor progression.
Volume: 2
Issue: 4
Pages: 437-44
Publication
First Author: Zhang S
Year: 2019
Journal: Aging (Albany NY)
Title: Identification of functional tRNA-derived fragments in senescence-accelerated mouse prone 8 brain.
Volume: 11
Issue: 22
Pages: 10485-10498
Publication
First Author: Falconi M
Year: 2019
Journal: FASEB J
Title: A novel 3'-tRNAGlu-derived fragment acts as a tumor suppressor in breast cancer by targeting nucleolin.
Volume: 33
Issue: 12
Pages: 13228-13240
Publication
First Author: Das M
Year: 2021
Journal: Nat Commun
Title: Time-restricted feeding normalizes hyperinsulinemia to inhibit breast cancer in obese postmenopausal mouse models.
Volume: 12
Issue: 1
Pages: 565
Publication
First Author: Hoffman A
Year: 1990
Journal: Nature
Title: Highly conserved core domain and unique N terminus with presumptive regulatory motifs in a human TATA factor (TFIID).
Volume: 346
Issue: 6282
Pages: 387-90
Publication
First Author: Wang W
Year: 2022
Journal: Neuroendocrinology
Title: Time-Restricted Feeding Restored Insulin-Growth Hormone Balance and Improved Substrate and Energy Metabolism in MC4RKO Obese Mice.
Volume: 112
Issue: 2
Pages: 174-185
Publication  
First Author: Sabbir MG
Year: 2018
Journal: Front Mol Biosci
Title: Loss of Ca2+/Calmodulin Dependent Protein Kinase Kinase 2 Leads to Aberrant Transferrin Phosphorylation and Trafficking: A Potential Biomarker for Alzheimer's Disease.
Volume: 5
Pages: 99
Protein
Organism: Mus musculus/domesticus
Length: 212  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 152  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 64  
Fragment?: true
Protein
Organism: Mus musculus/domesticus
Length: 260  
Fragment?: false
Publication
First Author: Xiao H
Year: 1999
Journal: J Biol Chem
Title: The human homologue of Drosophila TRF-proximal protein is associated with an RNA polymerase II-SRB complex.
Volume: 274
Issue: 7
Pages: 3937-40
Protein Domain
Type: Family
Description: The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation.The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directlywith MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP.Proteins in this entry are subunit Med20 of the Mediator complex, and is found in the non-essential part of the head []. and related to the TATA-binding protein (TBP). TBP is a highly conserved RNA polymerase II general transcription factor that binds to the core promoter and initiates assembly of the pre-initiation complex. Human TRF has been shown to associate with an RNA polymerase II-SRB complex [].
Protein
Organism: Mus musculus/domesticus
Length: 350  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 316  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 348  
Fragment?: true
Protein
Organism: Mus musculus/domesticus
Length: 349  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 316  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 250  
Fragment?: true
Publication
First Author: Nikolov DB
Year: 1992
Journal: Nature
Title: Crystal structure of TFIID TATA-box binding protein.
Volume: 360
Issue: 6399
Pages: 40-6
Publication  
First Author: Hilgers J
Year: 1976
Journal: Mouse News Lett
Title: Inbred strains and markers.
Volume: 54
Pages: 30-1
Publication
First Author: Bourbon HM
Year: 2004
Journal: Mol Cell
Title: A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II.
Volume: 14
Issue: 5
Pages: 553-7
Publication      
First Author: The Gene Expression Nervous System Atlas (GENSAT) Project, The Rockefeller University (New York, NY)
Year: 2005
Journal: Database Download
Title: MGI download of GENSAT transgene data