Type |
Details |
Score |
Publication |
First Author: |
Man SM |
Year: |
2015 |
Journal: |
Nat Immunol |
Title: |
The transcription factor IRF1 and guanylate-binding proteins target activation of the AIM2 inflammasome by Francisella infection. |
Volume: |
16 |
Issue: |
5 |
Pages: |
467-75 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mandal P |
Year: |
2018 |
Journal: |
Immunity |
Title: |
Caspase-8 Collaborates with Caspase-11 to Drive Tissue Damage and Execution of Endotoxic Shock. |
Volume: |
49 |
Issue: |
1 |
Pages: |
42-55.e6 |
|
•
•
•
•
•
|
Publication |
First Author: |
Vince JE |
Year: |
2012 |
Journal: |
Immunity |
Title: |
Inhibitor of apoptosis proteins limit RIP3 kinase-dependent interleukin-1 activation. |
Volume: |
36 |
Issue: |
2 |
Pages: |
215-27 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lawlor KE |
Year: |
2015 |
Journal: |
Nat Commun |
Title: |
RIPK3 promotes cell death and NLRP3 inflammasome activation in the absence of MLKL. |
Volume: |
6 |
|
Pages: |
6282 |
|
•
•
•
•
•
|
Publication |
First Author: |
Roth KA |
Year: |
2000 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Epistatic and independent functions of caspase-3 and Bcl-X(L) in developmental programmed cell death. |
Volume: |
97 |
Issue: |
1 |
Pages: |
466-71 |
|
•
•
•
•
•
|
Publication |
First Author: |
Exley GE |
Year: |
1999 |
Journal: |
Biol Reprod |
Title: |
Expression of caspase and BCL-2 apoptotic family members in mouse preimplantation embryos. |
Volume: |
61 |
Issue: |
1 |
Pages: |
231-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ikeda T |
Year: |
2009 |
Journal: |
J Vet Med Sci |
Title: |
Expression of caspase family and muscle- and apoptosis-specific genes during skeletal myogenesis in mouse embryo. |
Volume: |
71 |
Issue: |
9 |
Pages: |
1161-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kuriakose T |
Year: |
2016 |
Journal: |
Sci Immunol |
Title: |
ZBP1/DAI is an innate sensor of influenza virus triggering the NLRP3 inflammasome and programmed cell death pathways. |
Volume: |
1 |
Issue: |
2 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Svandova EB |
Year: |
2017 |
Journal: |
Histochem Cell Biol |
Title: |
Expression of Fas, FasL, caspase-8 and other factors of the extrinsic apoptotic pathway during the onset of interdigital tissue elimination. |
Volume: |
147 |
Issue: |
4 |
Pages: |
497-510 |
|
•
•
•
•
•
|
Publication |
First Author: |
Simpson DS |
Year: |
2022 |
Journal: |
Immunity |
Title: |
Interferon-γ primes macrophages for pathogen ligand-induced killing via a caspase-8 and mitochondrial cell death pathway. |
Volume: |
55 |
Issue: |
3 |
Pages: |
423-441.e9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Karki R |
Year: |
2018 |
Journal: |
Cell |
Title: |
IRF8 Regulates Transcription of Naips for NLRC4 Inflammasome Activation. |
Volume: |
173 |
Issue: |
4 |
Pages: |
920-933.e13 |
|
•
•
•
•
•
|
Publication |
First Author: |
Karki R |
Year: |
2021 |
Journal: |
Cell |
Title: |
Synergism of TNF-α and IFN-γ Triggers Inflammatory Cell Death, Tissue Damage, and Mortality in SARS-CoV-2 Infection and Cytokine Shock Syndromes. |
Volume: |
184 |
Issue: |
1 |
Pages: |
149-168.e17 |
|
•
•
•
•
•
|
Publication |
First Author: |
Han JH |
Year: |
2024 |
Journal: |
Nat Commun |
Title: |
NINJ1 mediates inflammatory cell death, PANoptosis, and lethality during infection conditions and heat stress. |
Volume: |
15 |
Issue: |
1 |
Pages: |
1739 |
|
•
•
•
•
•
|
Publication |
First Author: |
McCoy AM |
Year: |
2017 |
Journal: |
Am J Pathol |
Title: |
IKKβ Activation in the Fetal Lung Mesenchyme Alters Lung Vascular Development but Not Airway Morphogenesis. |
Volume: |
187 |
Issue: |
12 |
Pages: |
2635-2644 |
|
•
•
•
•
•
|
Publication |
First Author: |
Nishikii H |
Year: |
2016 |
Journal: |
Blood |
Title: |
DR3 signaling modulates the function of Foxp3+ regulatory T cells and the severity of acute graft-versus-host disease. |
Volume: |
128 |
Issue: |
24 |
Pages: |
2846-2858 |
|
•
•
•
•
•
|
Publication |
First Author: |
Stauber M |
Year: |
2017 |
Journal: |
Dev Biol |
Title: |
Identification of FOXJ1 effectors during ciliogenesis in the foetal respiratory epithelium and embryonic left-right organiser of the mouse. |
Volume: |
423 |
Issue: |
2 |
Pages: |
170-188 |
|
•
•
•
•
•
|
Publication |
First Author: |
Soma S |
Year: |
2024 |
Journal: |
Stem Cells |
Title: |
O-Linked N-Acetylglucosamine Transferase Ensures Survival of Mouse Fetal Liver Hematopoietic Progenitors Partly by Regulating Bcl-xL and Oxidative Phosphorylation. |
Volume: |
42 |
Issue: |
1 |
Pages: |
55-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
Reed JC |
Year: |
2003 |
Journal: |
Genome Res |
Title: |
Comparative analysis of apoptosis and inflammation genes of mice and humans. |
Volume: |
13 |
Issue: |
6B |
Pages: |
1376-88 |
|
•
•
•
•
•
|
Publication |
First Author: |
Thiagarajan RD |
Year: |
2011 |
Journal: |
PLoS One |
Title: |
Identification of anchor genes during kidney development defines ontological relationships, molecular subcompartments and regulatory pathways. |
Volume: |
6 |
Issue: |
2 |
Pages: |
e17286 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shanghai Model Organisms Center |
Year: |
2017 |
Journal: |
MGI Direct Data Submission |
Title: |
Information obtained from the Shanghai Model Organisms Center (SMOC), Shanghai, China |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Dickinson ME |
Year: |
2016 |
Journal: |
Nature |
Title: |
High-throughput discovery of novel developmental phenotypes. |
Volume: |
537 |
Issue: |
7621 |
Pages: |
508-514 |
|
•
•
•
•
•
|
Publication |
First Author: |
Koscielny G |
Year: |
2014 |
Journal: |
Nucleic Acids Res |
Title: |
The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. |
Volume: |
42 |
Issue: |
Database issue |
Pages: |
D802-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
International Knockout Mouse Consortium |
Year: |
2014 |
Journal: |
Database Download |
Title: |
MGI download of modified allele data from IKMC and creation of new knockout alleles |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
International Mouse Strain Resource |
Year: |
2014 |
Journal: |
Database Download |
Title: |
MGI download of germline transmission data for alleles from IMSR strain data |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Wellcome Trust Sanger Institute |
Year: |
2009 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the KOMP project by the Wellcome Trust Sanger Institute |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GUDMAP Consortium |
Year: |
2004 |
Journal: |
www.gudmap.org |
Title: |
GUDMAP: the GenitoUrinary Development Molecular Anatomy Project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC) |
Year: |
2014 |
Journal: |
Database Release |
Title: |
Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2014 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-rat orthologs |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
DDB, FB, MGI, GOA, ZFIN curators |
Year: |
2001 |
|
Title: |
Gene Ontology annotation through association of InterPro records with GO terms |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Chromosome assignment of mouse genes using the Mouse Genome Sequencing Consortium (MGSC) assembly and the ENSEMBL Database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kawai J |
Year: |
2001 |
Journal: |
Nature |
Title: |
Functional annotation of a full-length mouse cDNA collection. |
Volume: |
409 |
Issue: |
6821 |
Pages: |
685-90 |
|
•
•
•
•
•
|
Publication |
First Author: |
Adams DJ |
Year: |
2024 |
Journal: |
Nature |
Title: |
Genetic determinants of micronucleus formation in vivo. |
Volume: |
627 |
Issue: |
8002 |
Pages: |
130-136 |
|
•
•
•
•
•
|
Publication |
First Author: |
MGD Nomenclature Committee |
Year: |
1995 |
|
Title: |
Nomenclature Committee Use |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
|
Title: |
GemPharmatech Website. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Skarnes WC |
Year: |
2011 |
Journal: |
Nature |
Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
Volume: |
474 |
Issue: |
7351 |
Pages: |
337-42 |
|
•
•
•
•
•
|
Publication |
First Author: |
Cyagen Biosciences Inc. |
Year: |
2022 |
|
Title: |
Cyagen Biosciences Website. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators |
Year: |
2011 |
|
Title: |
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GOA curators |
Year: |
2016 |
|
Title: |
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Okazaki Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
563-73 |
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Diez-Roux G |
Year: |
2011 |
Journal: |
PLoS Biol |
Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Volume: |
9 |
Issue: |
1 |
Pages: |
e1000582 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
MGI Genome Annotation Group and UniGene Staff |
Year: |
2015 |
Journal: |
Database Download |
Title: |
MGI-UniGene Interconnection Effort |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
|
Title: |
Annotation inferences using phylogenetic trees |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
|
|
|
•
•
•
•
•
|
Allele |
Name: |
caspase 4, apoptosis-related cysteine peptidase; endonuclease-mediated mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Null/knockout |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, mutant strain, endonuclease-mediated mutation |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
687
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
642
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Li C |
Year: |
2013 |
Journal: |
J Biol Chem |
Title: |
Transmembrane Protein 214 (TMEM214) mediates endoplasmic reticulum stress-induced caspase 4 enzyme activation and apoptosis. |
Volume: |
288 |
Issue: |
24 |
Pages: |
17908-17 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
TMEM214 is a critical mediator, in cooperation with CASP4, of endoplasmic reticulum-stress induced apoptosis. It is required or the activation of CASP4 following endoplasmic reticulum stress []. |
|
•
•
•
•
•
|
Allele |
Name: |
caspase 12; targeted mutation 1, Donald W Nicholson |
Allele Type: |
Targeted |
Attribute String: |
Null/knockout |
|
•
•
•
•
•
|
Publication |
First Author: |
Saleh M |
Year: |
2006 |
Journal: |
Nature |
Title: |
Enhanced bacterial clearance and sepsis resistance in caspase-12-deficient mice. |
Volume: |
440 |
Issue: |
7087 |
Pages: |
1064-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bhootada Y |
Year: |
2015 |
Journal: |
Invest Ophthalmol Vis Sci |
Title: |
Targeting Caspase-12 to Preserve Vision in Mice With Inherited Retinal Degeneration. |
Volume: |
56 |
Issue: |
8 |
Pages: |
4725-33 |
|
•
•
•
•
•
|
Allele |
Name: |
transgene insertion 1, Joseph Buxbaum |
Allele Type: |
Transgenic |
Attribute String: |
Humanized sequence, Inserted expressed sequence |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Casp12/Casp12 |
Background: |
involves: 129S1/SvImJ * C57BL/6 |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Wang P |
Year: |
2010 |
Journal: |
Nat Immunol |
Title: |
Caspase-12 controls West Nile virus infection via the viral RNA receptor RIG-I. |
Volume: |
11 |
Issue: |
10 |
Pages: |
912-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Labbé K |
Year: |
2010 |
Journal: |
J Immunol |
Title: |
Caspase-12 dampens the immune response to malaria independently of the inflammasome by targeting NF-kappaB signaling. |
Volume: |
185 |
Issue: |
9 |
Pages: |
5495-502 |
|
•
•
•
•
•
|
Publication |
First Author: |
Jenkins D |
Year: |
2010 |
Journal: |
Nephrol Dial Transplant |
Title: |
Analysis of TSHZ2 and TSHZ3 genes in congenital pelvi-ureteric junction obstruction. |
Volume: |
25 |
Issue: |
1 |
Pages: |
54-60 |
|
•
•
•
•
•
|
Publication |
First Author: |
Caubit X |
Year: |
2008 |
Journal: |
Development |
Title: |
Teashirt 3 is necessary for ureteral smooth muscle differentiation downstream of SHH and BMP4. |
Volume: |
135 |
Issue: |
19 |
Pages: |
3301-10 |
|
•
•
•
•
•
|
Publication |
First Author: |
Caubit X |
Year: |
2010 |
Journal: |
J Neurosci |
Title: |
Teashirt 3 regulates development of neurons involved in both respiratory rhythm and airflow control. |
Volume: |
30 |
Issue: |
28 |
Pages: |
9465-76 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
Teashirt 3 is a transcriptional regulator involved in developmental processes []. It has function in association with APBB1, SET and HDAC factors as a transcriptional repressor, that inhibits the expression of CASP4. TSHZ3-mediated transcription repression involves the recruitment of histone deacetylases HDAC1 and HDAC2. It associates with chromatin in a region surrounding the CASP4 transcriptional start site(s). It regulates the development of neurons involved in both respiratory rhythm and airflow control []. It promotes maintenance of nucleus ambiguus (nA) motoneurons, which govern upper airway function, and establishes a respiratory rhythm generator (RRG) activity compatible with survival at birth. It is involved in the differentiation of the proximal uretic smooth muscle cells during developmental processes []. It is involved in the up-regulation of myocardin, that directs the expression of smooth muscle cells in the proximal ureter []. |
|
•
•
•
•
•
|
Publication |
First Author: |
Dupaul-Chicoine J |
Year: |
2010 |
Journal: |
Immunity |
Title: |
Control of intestinal homeostasis, colitis, and colitis-associated colorectal cancer by the inflammatory caspases. |
Volume: |
32 |
Issue: |
3 |
Pages: |
367-78 |
|
•
•
•
•
•
|
Strain |
Attribute String: |
mutant strain, transgenic, targeted mutation, variant allele |
|
•
•
•
•
•
|
Publication |
First Author: |
Basova LV |
Year: |
2017 |
Journal: |
Invest Ophthalmol Vis Sci |
Title: |
Manipulation of Panx1 Activity Increases the Engraftment of Transplanted Lacrimal Gland Epithelial Progenitor Cells. |
Volume: |
58 |
Issue: |
13 |
Pages: |
5654-5665 |
|
•
•
•
•
•
|
Publication |
First Author: |
Manfroid I |
Year: |
2004 |
Journal: |
Development |
Title: |
Three putative murine Teashirt orthologues specify trunk structures in Drosophila in the same way as the Drosophila teashirt gene. |
Volume: |
131 |
Issue: |
5 |
Pages: |
1065-73 |
|
•
•
•
•
•
|
Publication |
First Author: |
Diamanti MA |
Year: |
2017 |
Journal: |
J Exp Med |
Title: |
IKKα controls ATG16L1 degradation to prevent ER stress during inflammation. |
Volume: |
214 |
Issue: |
2 |
Pages: |
423-437 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1081
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
232
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1081
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
523
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
753
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1081
 |
Fragment?: |
false |
|
•
•
•
•
•
|