Type |
Details |
Score |
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2014 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-rat orthologs |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Magdaleno S |
Year: |
2006 |
Journal: |
PLoS Biol |
Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
Volume: |
4 |
Issue: |
4 |
Pages: |
e86 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Chromosome assignment of mouse genes using the Mouse Genome Sequencing Consortium (MGSC) assembly and the ENSEMBL Database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kawai J |
Year: |
2001 |
Journal: |
Nature |
Title: |
Functional annotation of a full-length mouse cDNA collection. |
Volume: |
409 |
Issue: |
6821 |
Pages: |
685-90 |
|
•
•
•
•
•
|
Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
|
Title: |
GemPharmatech Website. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Cyagen Biosciences Inc. |
Year: |
2022 |
|
Title: |
Cyagen Biosciences Website. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators |
Year: |
2011 |
|
Title: |
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GOA curators |
Year: |
2016 |
|
Title: |
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Okazaki Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
563-73 |
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Diez-Roux G |
Year: |
2011 |
Journal: |
PLoS Biol |
Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Volume: |
9 |
Issue: |
1 |
Pages: |
e1000582 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
MGI Genome Annotation Group and UniGene Staff |
Year: |
2015 |
Journal: |
Database Download |
Title: |
MGI-UniGene Interconnection Effort |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
|
Title: |
Annotation inferences using phylogenetic trees |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
|
|
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
GSE15748 |
Experiment Type: |
transcription profiling by array |
Study Type: |
Baseline |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
GSE15582 |
Experiment Type: |
transcription profiling by array |
Study Type: |
Baseline |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
Allele |
Name: |
transgene insertion, Christine E Seidman |
Allele Type: |
Transgenic |
Attribute String: |
Inserted expressed sequence |
|
•
•
•
•
•
|
Allele |
Name: |
transgene insertion, Evangelia G Kranias |
Allele Type: |
Transgenic |
Attribute String: |
Humanized sequence, Inserted expressed sequence |
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
GSE57237 |
Experiment Type: |
transcription profiling by array |
Study Type: |
Baseline |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
GSE15150 |
Experiment Type: |
transcription profiling by array |
Study Type: |
Baseline |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
Transgene |
Type: |
transgene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Tg(Myh6-Pln*R9C)#Ces/? |
Background: |
involves: FVB/N |
Zygosity: |
ot |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
DO Term |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Tg(Myh6-Pln*)#Egk/? |
Background: |
Not Specified |
Zygosity: |
ot |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
GSE66658 |
Experiment Type: |
transcription profiling by array |
Study Type: |
Baseline |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
Publication |
First Author: |
Abrami L |
Year: |
2017 |
Journal: |
Elife |
Title: |
Identification and dynamics of the human ZDHHC16-ZDHHC6 palmitoylation cascade. |
Volume: |
6 |
|
|
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
77
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
101
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
167
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
228
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Shi W |
Year: |
2016 |
Journal: |
Dev Neurobiol |
Title: |
ZDHHC16 modulates FGF/ERK dependent proliferation of neural stem/progenitor cells in the zebrafish telencephalon. |
Volume: |
76 |
Issue: |
9 |
Pages: |
1014-28 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
ZDHHC16 is a palmitoyl acyltransferase that mediates palmitoylation of proteins such as PLN and ZDHHC6 []. In zebrafish, there are two ZDHHC16 homologues, ZDHHC16A and ZDHHC16B. They are involved in the proliferation of neural stem cells by regulating the FGF/ERK pathway []. |
|
•
•
•
•
•
|
Publication |
First Author: |
Fajardo VA |
Year: |
2016 |
Journal: |
Brain Behav |
Title: |
Diaphragm assessment in mice overexpressing phospholamban in slow-twitch type I muscle fibers. |
Volume: |
6 |
Issue: |
6 |
Pages: |
e00470 |
|
•
•
•
•
•
|
Allele |
Name: |
phospholamban; targeted mutation 1.1, Francesca Stillitano |
Allele Type: |
Targeted |
Attribute String: |
Inserted expressed sequence, Null/knockout |
|
•
•
•
•
•
|
Allele |
Name: |
phospholamban; targeted mutation 2.1, Francesca Stillitano |
Allele Type: |
Targeted |
Attribute String: |
Humanized sequence, Inserted expressed sequence, Null/knockout |
|
•
•
•
•
•
|
Allele |
Name: |
transgene insertion 2, Evangelia G Kranias |
Allele Type: |
Transgenic |
Attribute String: |
Inserted expressed sequence |
|
•
•
•
•
•
|
Strain |
Attribute String: |
mutant strain, transgenic, coisogenic |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, mutant strain, transgenic |
|
•
•
•
•
•
|
Strain |
Attribute String: |
targeted mutation, mutant stock |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Tg(Myh7-Pln)2Egk/? |
Background: |
FVB/N-Tg(Myh7-Pln)2Egk |
Zygosity: |
ot |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Tg(Myh7-Pln)2Egk/? |
Background: |
involves: FVB/N |
Zygosity: |
ot |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
HT Experiment |
|
Experiment Type: |
RNA-Seq |
Study Type: |
Baseline |
Source: |
GEO |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
361
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
97
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Fukuyama S |
Year: |
2002 |
Journal: |
Immunity |
Title: |
Initiation of NALT organogenesis is independent of the IL-7R, LTbetaR, and NIK signaling pathways but requires the Id2 gene and CD3(-)CD4(+)CD45(+) cells. |
Volume: |
17 |
Issue: |
1 |
Pages: |
31-40 |
|
•
•
•
•
•
|
Publication |
First Author: |
Knop L |
Year: |
2020 |
Journal: |
Eur J Immunol |
Title: |
IL-7 derived from lymph node fibroblastic reticular cells is dispensable for naive TÂ cell homeostasis but crucial for central memory TÂ cell survival. |
Volume: |
50 |
Issue: |
6 |
Pages: |
846-857 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lax S |
Year: |
2010 |
Journal: |
Eur J Immunol |
Title: |
The pericyte and stromal cell marker CD248 (endosialin) is required for efficient lymph node expansion. |
Volume: |
40 |
Issue: |
7 |
Pages: |
1884-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Diacovo TG |
Year: |
1998 |
Journal: |
J Exp Med |
Title: |
Circulating activated platelets reconstitute lymphocyte homing and immunity in L-selectin-deficient mice. |
Volume: |
187 |
Issue: |
2 |
Pages: |
197-204 |
|
•
•
•
•
•
|
Publication |
First Author: |
Georgiev H |
Year: |
2018 |
Journal: |
Front Immunol |
Title: |
Shared and Unique Features Distinguishing Follicular T Helper and Regulatory Cells of Peripheral Lymph Node and Peyer's Patches. |
Volume: |
9 |
|
Pages: |
714 |
|
•
•
•
•
•
|
Publication |
First Author: |
Naumov YN |
Year: |
2001 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Activation of CD1d-restricted T cells protects NOD mice from developing diabetes by regulating dendritic cell subsets. |
Volume: |
98 |
Issue: |
24 |
Pages: |
13838-43 |
|
•
•
•
•
•
|
Publication |
First Author: |
Maity R |
Year: |
1995 |
Journal: |
Immunopharmacology |
Title: |
Morphine inhibits the development of allogeneic immune responses in mouse lymph node. |
Volume: |
29 |
Issue: |
2 |
Pages: |
175-83 |
|
•
•
•
•
•
|
Publication |
First Author: |
Park J |
Year: |
2019 |
Journal: |
Biochem Biophys Res Commun |
Title: |
Adipogenic function of mouse tetranectin and identification of its functional domain. |
Volume: |
519 |
Issue: |
3 |
Pages: |
645-651 |
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
GSE13163 |
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
Publication |
First Author: |
Kaliman P |
Year: |
2005 |
Journal: |
J Biol Chem |
Title: |
Myotonic dystrophy protein kinase phosphorylates phospholamban and regulates calcium uptake in cardiomyocyte sarcoplasmic reticulum. |
Volume: |
280 |
Issue: |
9 |
Pages: |
8016-21 |
|
•
•
•
•
•
|
Publication |
First Author: |
Gauguet JM |
Year: |
2004 |
Journal: |
Blood |
Title: |
Core 2 branching beta1,6-N-acetylglucosaminyltransferase and high endothelial cell N-acetylglucosamine-6-sulfotransferase exert differential control over B- and T-lymphocyte homing to peripheral lymph nodes. |
Volume: |
104 |
Issue: |
13 |
Pages: |
4104-12 |
|
•
•
•
•
•
|
Publication |
First Author: |
Gala RR |
Year: |
1993 |
Journal: |
Proc Soc Exp Biol Med |
Title: |
Influence of prolactin and growth hormone on the activation of dwarf mouse lymphocytes in vivo. |
Volume: |
204 |
Issue: |
2 |
Pages: |
224-30 |
|
•
•
•
•
•
|
Publication |
First Author: |
Jeucken KCM |
Year: |
2021 |
Journal: |
Front Immunol |
Title: |
A Straightforward Method for 3D Visualization of B Cell Clusters and High Endothelial Venules in Lymph Nodes Highlights Differential Roles of TNFRI and -II. |
Volume: |
12 |
|
Pages: |
699336 |
|
•
•
•
•
•
|
Publication |
First Author: |
Creusot RJ |
Year: |
2008 |
Journal: |
Clin Immunol |
Title: |
Tissue-targeted therapy of autoimmune diabetes using dendritic cells transduced to express IL-4 in NOD mice. |
Volume: |
127 |
Issue: |
2 |
Pages: |
176-87 |
|
•
•
•
•
•
|
Publication |
First Author: |
Françozo MCS |
Year: |
2019 |
Journal: |
Sci Rep |
Title: |
Dendritic cells and regulatory T cells expressing CCR4 provide resistance to coxsackievirus B5-induced pancreatitis. |
Volume: |
9 |
Issue: |
1 |
Pages: |
14766 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wirsdörfer F |
Year: |
2016 |
Journal: |
PLoS One |
Title: |
Dendritic Cell-Like Cells Accumulate in Regenerating Murine Skeletal Muscle after Injury and Boost Adaptive Immune Responses Only upon a Microbial Challenge. |
Volume: |
11 |
Issue: |
5 |
Pages: |
e0155870 |
|
•
•
•
•
•
|
Publication |
First Author: |
Liao S |
Year: |
2006 |
Journal: |
J Immunol |
Title: |
Synchrony of high endothelial venules and lymphatic vessels revealed by immunization. |
Volume: |
177 |
Issue: |
5 |
Pages: |
3369-79 |
|
•
•
•
•
•
|
Publication |
First Author: |
Doisne JM |
Year: |
2009 |
Journal: |
J Immunol |
Title: |
Skin and peripheral lymph node invariant NKT cells are mainly retinoic acid receptor-related orphan receptor (gamma)t+ and respond preferentially under inflammatory conditions. |
Volume: |
183 |
Issue: |
3 |
Pages: |
2142-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Boscacci RT |
Year: |
2010 |
Journal: |
Blood |
Title: |
Comprehensive analysis of lymph node stroma-expressed Ig superfamily members reveals redundant and nonredundant roles for ICAM-1, ICAM-2, and VCAM-1 in lymphocyte homing. |
Volume: |
116 |
Issue: |
6 |
Pages: |
915-25 |
|
•
•
•
•
•
|
Publication |
First Author: |
Dessing MC |
Year: |
2009 |
Journal: |
PLoS One |
Title: |
Role of Toll-like receptors 2 and 4 in pulmonary inflammation and injury induced by pneumolysin in mice. |
Volume: |
4 |
Issue: |
11 |
Pages: |
e7993 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kumar V |
Year: |
2010 |
Journal: |
Blood |
Title: |
Global lymphoid tissue remodeling during a viral infection is orchestrated by a B cell-lymphotoxin-dependent pathway. |
Volume: |
115 |
Issue: |
23 |
Pages: |
4725-33 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wu X |
Year: |
2015 |
Journal: |
J Immunol |
Title: |
T cell-extrinsic CD18 attenuates antigen-dependent CD4+ T cell activation in vivo. |
Volume: |
194 |
Issue: |
9 |
Pages: |
4122-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yadav D |
Year: |
2004 |
Journal: |
J Immunol |
Title: |
B7-2 (CD86) controls the priming of autoreactive CD4 T cell response against pancreatic islets. |
Volume: |
173 |
Issue: |
6 |
Pages: |
3631-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Galkina E |
Year: |
2007 |
Journal: |
Eur J Immunol |
Title: |
T lymphocyte rolling and recruitment into peripheral lymph nodes is regulated by a saturable density of L-selectin (CD62L). |
Volume: |
37 |
Issue: |
5 |
Pages: |
1243-53 |
|
•
•
•
•
•
|
Publication |
First Author: |
Venturi GM |
Year: |
2007 |
Journal: |
J Immunol |
Title: |
CD25+CD4+ regulatory T cell migration requires L-selectin expression: L-selectin transcriptional regulation balances constitutive receptor turnover. |
Volume: |
178 |
Issue: |
1 |
Pages: |
291-300 |
|
•
•
•
•
•
|
Publication |
First Author: |
Graham KL |
Year: |
2011 |
Journal: |
Am J Pathol |
Title: |
Autoreactive cytotoxic T lymphocytes acquire higher expression of cytotoxic effector markers in the islets of NOD mice after priming in pancreatic lymph nodes. |
Volume: |
178 |
Issue: |
6 |
Pages: |
2716-25 |
|
•
•
•
•
•
|
Publication |
First Author: |
Jones BW |
Year: |
2012 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Cardiomyocytes from AKAP7 knockout mice respond normally to adrenergic stimulation. |
Volume: |
109 |
Issue: |
42 |
Pages: |
17099-104 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhang Y |
Year: |
2010 |
Journal: |
J Immunol |
Title: |
TLR9 blockade inhibits activation of diabetogenic CD8+ T cells and delays autoimmune diabetes. |
Volume: |
184 |
Issue: |
10 |
Pages: |
5645-53 |
|
•
•
•
•
•
|
Publication |
First Author: |
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J Immunol |
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Cutting edge: CD25+ regulatory T cells prevent expansion and induce apoptosis of B cells specific for tissue autoantigens. |
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Eur J Immunol |
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