| Type |
Details |
Score |
| GXD Expression |
| Probe: |
MGI:7788255 |
| Assay Type: |
Western blot |
| Annotation Date: |
2024-12-18 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1735719 |
|
| Stage: |
TS19 |
| Assay Id: |
MGI:7788335 |
| Age: |
embryonic day 11.5 |
| Image: |
S3 |
|
| Specimen Label: |
Mes |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7788255 |
| Assay Type: |
Western blot |
| Annotation Date: |
2024-12-18 |
| Strength: |
Absent |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:3818419 |
|
| Stage: |
TS19 |
| Assay Id: |
MGI:7788335 |
| Age: |
embryonic day 11.5 |
| Image: |
S3 |
|
| Specimen Label: |
Epi |
| Detected: |
false |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:1447853 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-26 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:3271122 |
| Pattern: |
Not Specified |
| Stage: |
TS22 |
| Assay Id: |
MGI:7530844 |
| Age: |
embryonic day 14.5 |
|
|
| Specimen Label: |
Supplementary table 2 |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:1447853 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2010-09-14 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1603923 |
| Pattern: |
Ubiquitous |
| Stage: |
TS23 |
| Assay Id: |
MGI:4827580 |
| Age: |
embryonic day 14.5 |
| Image: |
euxassay_006549_15 |
|
| Specimen Label: |
euxassay_006549_15 |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7788247 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2024-12-18 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1735719 |
| Pattern: |
Not Specified |
| Stage: |
TS19 |
| Assay Id: |
MGI:7788329 |
| Age: |
embryonic day 11.5 |
| Image: |
3D' |
| Note: |
Expression restricted to mesenchyme. |
| Specimen Label: |
3D' |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:1447853 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2023-09-26 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1754722 |
| Pattern: |
Not Specified |
| Stage: |
TS22 |
| Assay Id: |
MGI:7530844 |
| Age: |
embryonic day 14.5 |
|
|
| Specimen Label: |
Supplementary table 2 |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GO Term |
|
•
•
•
•
•
|
| Allele |
| Name: |
RAB3A interacting protein; gene trap Ayu21-W142, Institute of Molecular Embryology and Genetics |
| Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
| Allele |
| Name: |
RAB3A interacting protein (rabin3)-like 1; targeted mutation 2e, Wellcome Trust Sanger Institute |
| Allele Type: |
Targeted |
| Attribute String: |
Null/knockout, Reporter |
|
•
•
•
•
•
|
| Allele |
| Name: |
RAB3A interacting protein (rabin3)-like 1; targeted mutation 2a, Wellcome Trust Sanger Institute |
| Allele Type: |
Targeted |
| Attribute String: |
Conditional ready, Null/knockout, Reporter |
|
•
•
•
•
•
|
| Allele |
| Name: |
RAB3A interacting protein (rabin3)-like 1; gene trap 372H9, Centre for Modeling Human Disease |
| Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
| Allele |
| Name: |
RAB3A interacting protein; gene trap IST13513C11, Texas A&M Institute for Genomic Medicine |
| Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
| Allele |
| Name: |
RAB3A interacting protein; gene trap IST13640F7, Texas A&M Institute for Genomic Medicine |
| Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
| Allele |
| Name: |
RAB3A interacting protein; gene trap IST13778C5, Texas A&M Institute for Genomic Medicine |
| Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
| Allele |
| Name: |
RAB3A interacting protein; gene trap IST14248H8, Texas A&M Institute for Genomic Medicine |
| Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
| Allele |
| Name: |
RAB3A interacting protein; gene trap IST14383C5, Texas A&M Institute for Genomic Medicine |
| Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
| Allele |
| Name: |
RAB3A interacting protein; gene trap IST14502B2, Texas A&M Institute for Genomic Medicine |
| Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
| Allele |
| Name: |
RAB3A interacting protein; gene trap IST14994B12, Texas A&M Institute for Genomic Medicine |
| Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
|
•
•
•
•
•
|
| Allele |
| Name: |
RAB3A interacting protein (rabin3)-like 1; endonuclease-mediated mutation 1, GemPharmatech Co., Ltd |
| Allele Type: |
Endonuclease-mediated |
| Attribute String: |
Conditional ready, No functional change |
|
•
•
•
•
•
|
| Allele |
| Name: |
RAB3A interacting protein (rabin3)-like 1; endonuclease-mediated mutation 2, GemPharmatech Co., Ltd |
| Allele Type: |
Endonuclease-mediated |
| Attribute String: |
Null/knockout |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
|
•
•
•
•
•
|
| Genotype |
| Symbol: |
Rab3ip/Rab3ip |
| Background: |
involves: C57BL/6 * CBA |
| Zygosity: |
hm |
| Has Mutant Allele: |
true |
|
•
•
•
•
•
|
| Genotype |
| Symbol: |
Rab3il1/Rab3il1 |
| Background: |
C57BL/6NJ-Rab3il1/Mmjax |
| Zygosity: |
hm |
| Has Mutant Allele: |
true |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Dalfó E |
| Year: |
2004 |
| Journal: |
Neurobiol Dis |
| Title: |
Abnormal alpha-synuclein interactions with rab3a and rabphilin in diffuse Lewy body disease. |
| Volume: |
16 |
| Issue: |
1 |
| Pages: |
92-7 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Wang J |
| Year: |
2015 |
| Journal: |
J Cell Sci |
| Title: |
The Arf and Rab11 effector FIP3 acts synergistically with ASAP1 to direct Rabin8 in ciliary receptor targeting. |
| Volume: |
128 |
| Issue: |
7 |
| Pages: |
1375-85 |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
|
•
•
•
•
•
|
| Genotype |
| Symbol: |
Rab3ip/Rab3ip<+> |
| Background: |
involves: C57BL/6 * CBA |
| Zygosity: |
ht |
| Has Mutant Allele: |
true |
|
•
•
•
•
•
|
| Genotype |
| Symbol: |
Rab3ip/Rab3ip<+> |
| Background: |
C57BL/6N-Rab3ip/J |
| Zygosity: |
ht |
| Has Mutant Allele: |
true |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Fukuda M |
| Year: |
2004 |
| Journal: |
Genes Cells |
| Title: |
Alternative splicing in the first alpha-helical region of the Rab-binding domain of Rim regulates Rab3A binding activity: is Rim a Rab3 effector protein during evolution? |
| Volume: |
9 |
| Issue: |
9 |
| Pages: |
831-42 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Elliott KH |
| Year: |
2023 |
| Journal: |
Development |
| Title: |
Identification of a heterogeneous and dynamic ciliome during embryonic development and cell differentiation. |
| Volume: |
150 |
| Issue: |
8 |
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Li L |
| Year: |
2023 |
| Journal: |
Acta Biochim Biophys Sin (Shanghai) |
| Title: |
A direct interaction between CENTLEIN and RABIN8 is required for primary cilium formation. |
| Volume: |
55 |
| Issue: |
9 |
| Pages: |
1434-1444 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Andres DA |
| Year: |
1993 |
| Journal: |
Cell |
| Title: |
cDNA cloning of component A of Rab geranylgeranyl transferase and demonstration of its role as a Rab escort protein. |
| Volume: |
73 |
| Issue: |
6 |
| Pages: |
1091-9 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
This entry includes Rabphilin and Doc2. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: Rabphilin contains an N-terminal Rab-binding domain (RBD), whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID) []. This entry also includes Noc2 (also known as Rabphilin-3A-like protein), which is a potential effector of Ras-associated binding proteins Rab3A and Rab27A. Noc2 contains an N-terminal Rab3A effector domain which harbors a conserved zinc finger, but lacks tandem C2 domains []. |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Millar AL |
| Year: |
2002 |
| Journal: |
Histol Histopathol |
| Title: |
Rab3D: a regulator of exocytosis in non-neuronal cells. |
| Volume: |
17 |
| Issue: |
3 |
| Pages: |
929-36 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules []. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process []. |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Kotake K |
| Year: |
1997 |
| Journal: |
J Biol Chem |
| Title: |
Noc2, a putative zinc finger protein involved in exocytosis in endocrine cells. |
| Volume: |
272 |
| Issue: |
47 |
| Pages: |
29407-10 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Shanmugam C |
| Year: |
2009 |
| Journal: |
Biotech Histochem |
| Title: |
Immunohistochemical expression of rabphilin-3A-like (Noc2) in normal and tumor tissues of human endocrine pancreas. |
| Volume: |
84 |
| Issue: |
2 |
| Pages: |
39-45 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Manabe S |
| Year: |
2004 |
| Journal: |
Biochem Biophys Res Commun |
| Title: |
Identification and characterization of Noc2 as a potential Rab3B effector protein in epithelial cells. |
| Volume: |
316 |
| Issue: |
1 |
| Pages: |
218-25 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
Noc2, also known as Rabphilin-3A-like protein, is a potential effector of Ras-associated binding proteins Rab3A and Rab27A [, ]that is involved in the regulation of exocytosis in endocrine and exocrine cells [, , ]. Noc2 may regulate insulin secretion from pancreatic beta-cells and amylase secretion from pancreatic acini []. |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
49
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Imai A |
| Year: |
2006 |
| Journal: |
Arch Biochem Biophys |
| Title: |
Functional involvement of Noc2, a Rab27 effector, in rat parotid acinar cells. |
| Volume: |
455 |
| Issue: |
2 |
| Pages: |
127-35 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Olkkonen VM |
| Year: |
1994 |
| Journal: |
Gene |
| Title: |
Isolation of a mouse cDNA encoding Rab23, a small novel GTPase expressed predominantly in the brain. |
| Volume: |
138 |
| Issue: |
1-2 |
| Pages: |
207-11 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Yamaguchi K |
| Year: |
2002 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
A GDP/GTP exchange protein for the Rab3 small G protein family up-regulates a postdocking step of synaptic exocytosis in central synapses. |
| Volume: |
99 |
| Issue: |
22 |
| Pages: |
14536-41 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ishizaki H |
| Year: |
2000 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Role of rab GDP dissociation inhibitor alpha in regulating plasticity of hippocampal neurotransmission. |
| Volume: |
97 |
| Issue: |
21 |
| Pages: |
11587-92 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Fukuda M |
| Year: |
2005 |
| Journal: |
Methods Enzymol |
| Title: |
Assay of the Rab-binding specificity of rabphilin and Noc2: target molecules for Rab27. |
| Volume: |
403 |
|
| Pages: |
469-81 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Domain |
| Description: |
Rab effector Noc2 (also known as RPH3AL) is a Rab3 effector that mediates the regulation of secretory vesicle exocytosis in neurons and certain endocrine cells []. It also functions as a Rab27 effector and is involved in isoproterenol (IPR)-stimulated amylase release from acinar cells [, ]. Noc2 contains an N-terminal Rab3A effector domain which harbors a conserved zinc finger, but lacks tandem C2 domains. The FYVE domain of Noc2 resembles a FYVE-related domain that is structurally similar to the canonical FYVE domains but lacks the three signature sequences: an N-terminal WxxD motif (x for any residue), the central basic R(R/K)HHCRxCG patch, and a C-terminal RVC motif []. |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Bhartur SG |
| Year: |
2000 |
| Journal: |
Biochem Biophys Res Commun |
| Title: |
Genomic structure of murine Rab11 family members. |
| Volume: |
269 |
| Issue: |
2 |
| Pages: |
611-7 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Kukimoto-Niino M |
| Year: |
2008 |
| Journal: |
Structure |
| Title: |
Structural basis for the exclusive specificity of Slac2-a/melanophilin for the Rab27 GTPases. |
| Volume: |
16 |
| Issue: |
10 |
| Pages: |
1478-90 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Yasuda T |
| Year: |
2010 |
| Journal: |
Cell Metab |
| Title: |
Rim2alpha determines docking and priming states in insulin granule exocytosis. |
| Volume: |
12 |
| Issue: |
2 |
| Pages: |
117-29 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Adachi R |
| Year: |
2000 |
| Journal: |
Biochem Biophys Res Commun |
| Title: |
Genomic organization, chromosomal localization, and expression of the murine RAB3D gene. |
| Volume: |
273 |
| Issue: |
3 |
| Pages: |
877-83 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Encarnação M |
| Year: |
2016 |
| Journal: |
J Cell Biol |
| Title: |
A Rab3a-dependent complex essential for lysosome positioning and plasma membrane repair. |
| Volume: |
213 |
| Issue: |
6 |
| Pages: |
631-40 |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
1960
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Publication |
| First Author: |
van Bokhoven H |
| Year: |
1994 |
| Journal: |
Hum Mol Genet |
| Title: |
Cloning and characterization of the human choroideremia gene. |
| Volume: |
3 |
| Issue: |
7 |
| Pages: |
1041-6 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Cremers FP |
| Year: |
1990 |
| Journal: |
Nature |
| Title: |
Cloning of a gene that is rearranged in patients with choroideraemia. |
| Volume: |
347 |
| Issue: |
6294 |
| Pages: |
674-7 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Merry DE |
| Year: |
1992 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Isolation of a candidate gene for choroideremia. |
| Volume: |
89 |
| Issue: |
6 |
| Pages: |
2135-9 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Domain |
| Description: |
This entry represents the Rab-binding domain.Rab are small GTPases implicated in vesicle trafficking. Like the other smallGTPases, Rab proteins act as molecular switches, with an active GTP-bound formthat interacts with its target or effector protein and an inactive GDP-boundform. A subgroup of Rab effectors contain in their N-terminal part a conservedregion of around 70 amino acid residues, the Rab-binding domain (RabBD). Insome Rab effector domains an atypical FYVE-type zinc finger is inserted in thecentral part [].The crystal structure of the Rab effector domain of Rabphilin-3A in complexwith Rab3A has been solved []. The structure consists of twolong helices separated by an atypical FYVE-type zinc finger which adopts aconformation similar to classical ones. The central zincfinger does not directly interact with Rab3A. The amino acids important forthis interaction are located around a short C-terminal motif (SGAWFF) and anacidic cluster in the N-terminal area. |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 [, ]. REP-1 presents newly-synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction.cDNA cloning of component A of rat Rab geranylgeranyl transferase (REP) confirms its resemblance to Rab3A guanine nucleotide dissociation inhibitor (GDI) and its identity with the human choroideremia gene product []. A genetic defect in REP underlies human choroideremia. Choroideraemia (or tapetochoroidal dystrophy) is a common form of X-linked blindness characterised by progressive dystrophy of the choroid, retinal pigment epithelium and retina [, , ]. |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
83
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Nakayama T |
| Year: |
1999 |
| Journal: |
J Neurochem |
| Title: |
Localization and subcellular distribution of N-copine in mouse brain. |
| Volume: |
72 |
| Issue: |
1 |
| Pages: |
373-9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Merrins MJ |
| Year: |
2008 |
| Journal: |
J Physiol |
| Title: |
Kinetics of Rab27a-dependent actions on vesicle docking and priming in pancreatic beta-cells. |
| Volume: |
586 |
| Issue: |
22 |
| Pages: |
5367-81 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Spencer B |
| Year: |
2016 |
| Journal: |
J Neurosci |
| Title: |
Reducing Endogenous α-Synuclein Mitigates the Degeneration of Selective Neuronal Populations in an Alzheimer's Disease Transgenic Mouse Model. |
| Volume: |
36 |
| Issue: |
30 |
| Pages: |
7971-84 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Castillo PE |
| Year: |
2002 |
| Journal: |
Nature |
| Title: |
RIM1alpha is required for presynaptic long-term potentiation. |
| Volume: |
415 |
| Issue: |
6869 |
| Pages: |
327-30 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Paulmann N |
| Year: |
2009 |
| Journal: |
PLoS Biol |
| Title: |
Intracellular serotonin modulates insulin secretion from pancreatic beta-cells by protein serotonylation. |
| Volume: |
7 |
| Issue: |
10 |
| Pages: |
e1000229 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Smith GA |
| Year: |
2014 |
| Journal: |
Hum Mol Genet |
| Title: |
Progressive axonal transport and synaptic protein changes correlate with behavioral and neuropathological abnormalities in the heterozygous Q175 KI mouse model of Huntington's disease. |
| Volume: |
23 |
| Issue: |
17 |
| Pages: |
4510-27 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Tsetsenis T |
| Year: |
2011 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Rab3B protein is required for long-term depression of hippocampal inhibitory synapses and for normal reversal learning. |
| Volume: |
108 |
| Issue: |
34 |
| Pages: |
14300-5 |
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| Publication |
| First Author: |
Kang S |
| Year: |
2018 |
| Journal: |
Front Behav Neurosci |
| Title: |
Effects of a Dehydroevodiamine-Derivative on Synaptic Destabilization and Memory Impairment in the 5xFAD, Alzheimer's Disease Mouse Model. |
| Volume: |
12 |
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| Pages: |
273 |
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| Publication |
| First Author: |
Yi Z |
| Year: |
2002 |
| Journal: |
Mol Cell Biol |
| Title: |
The Rab27a/granuphilin complex regulates the exocytosis of insulin-containing dense-core granules. |
| Volume: |
22 |
| Issue: |
6 |
| Pages: |
1858-67 |
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
99
 |
| Fragment?: |
true |
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•
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
302
 |
| Fragment?: |
false |
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| Publication |
| First Author: |
Mitra S |
| Year: |
2018 |
| Journal: |
Front Mol Neurosci |
| Title: |
Absence of Wdr13 Gene Predisposes Mice to Mild Social Isolation - Chronic Stress, Leading to Depression-Like Phenotype Associated With Differential Expression of Synaptic Proteins. |
| Volume: |
11 |
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| Pages: |
133 |
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
196
 |
| Fragment?: |
true |
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•
•
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
133
 |
| Fragment?: |
true |
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| Publication |
| First Author: |
tom Dieck S |
| Year: |
1998 |
| Journal: |
J Cell Biol |
| Title: |
Bassoon, a novel zinc-finger CAG/glutamine-repeat protein selectively localized at the active zone of presynaptic nerve terminals. |
| Volume: |
142 |
| Issue: |
2 |
| Pages: |
499-509 |
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| Publication |
| First Author: |
Takao-Rikitsu E |
| Year: |
2004 |
| Journal: |
J Cell Biol |
| Title: |
Physical and functional interaction of the active zone proteins, CAST, RIM1, and Bassoon, in neurotransmitter release. |
| Volume: |
164 |
| Issue: |
2 |
| Pages: |
301-11 |
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| Protein Domain |
| Type: |
Domain |
| Description: |
Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding propertiesdepend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. |
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| Publication |
| First Author: |
Hong Y |
| Year: |
2016 |
| Journal: |
J Neurosci |
| Title: |
Mutant Huntingtin Impairs BDNF Release from Astrocytes by Disrupting Conversion of Rab3a-GTP into Rab3a-GDP. |
| Volume: |
36 |
| Issue: |
34 |
| Pages: |
8790-801 |
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
529
 |
| Fragment?: |
false |
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•
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
534
 |
| Fragment?: |
true |
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•
•
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
211
 |
| Fragment?: |
true |
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•
•
•
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
533
 |
| Fragment?: |
true |
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•
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| Publication |
| First Author: |
Alexandrov K |
| Year: |
1994 |
| Journal: |
EMBO J |
| Title: |
Rab escort protein-1 is a multifunctional protein that accompanies newly prenylated rab proteins to their target membranes. |
| Volume: |
13 |
| Issue: |
22 |
| Pages: |
5262-73 |
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
220
 |
| Fragment?: |
false |
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•
•
•
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
219
 |
| Fragment?: |
false |
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•
•
•
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
227
 |
| Fragment?: |
false |
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•
•
•
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
219
 |
| Fragment?: |
false |
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•
•
•
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
405
 |
| Fragment?: |
false |
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•
•
•
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
412
 |
| Fragment?: |
false |
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•
•
•
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| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
387
 |
| Fragment?: |
false |
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•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
211
 |
| Fragment?: |
true |
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•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
225
 |
| Fragment?: |
false |
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•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
227
 |
| Fragment?: |
false |
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•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
219
 |
| Fragment?: |
false |
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•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
262
 |
| Fragment?: |
true |
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•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
405
 |
| Fragment?: |
true |
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•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
225
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
219
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
387
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
177
 |
| Fragment?: |
true |
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•
•
•
•
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