Type |
Details |
Score |
GXD Expression |
Probe: |
MGI:4884918 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757728 |
Pattern: |
Widespread |
Stage: |
TS28 |
Assay Id: |
MGI:4945557 |
Age: |
postnatal day 7 |
Image: |
g01088 P7 |
|
Specimen Label: |
g01088 P7 |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4884918 |
Assay Type: |
RNA in situ |
Annotation Date: |
2011-04-11 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757728 |
Pattern: |
Widespread |
Stage: |
TS28 |
Assay Id: |
MGI:4945557 |
Age: |
postnatal day 42 |
Image: |
g01088 Adult |
|
Specimen Label: |
g01088 Adult |
Detected: |
true |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5633926 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2015-04-28 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757525 |
Pattern: |
Regionally restricted |
Stage: |
TS25 |
Assay Id: |
MGI:5633927 |
Age: |
embryonic day 17.5 |
Image: |
6A |
Note: |
Expression is in the meninges of the optic nerve. |
Specimen Label: |
6A |
Detected: |
true |
Specimen Num: |
6 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5633926 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2015-04-28 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757528 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:5633927 |
Age: |
postnatal adult |
|
Note: |
Expression is in the meninges surrounding the optic nerve. |
Specimen Label: |
not shown, A |
Detected: |
true |
Specimen Num: |
8 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:1095394 |
Assay Type: |
RNA in situ |
Annotation Date: |
2015-04-29 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1757521 |
Pattern: |
Regionally restricted |
Stage: |
TS21 |
Assay Id: |
MGI:5633975 |
Age: |
embryonic day 13.5 |
Image: |
10D |
Note: |
Expression is in the meninges of the optic nerve. |
Specimen Label: |
10D |
Detected: |
true |
Specimen Num: |
11 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:32204 |
Assay Type: |
RNA in situ |
Annotation Date: |
2022-02-15 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3567624 |
Pattern: |
Regionally restricted |
Stage: |
TS24 |
Assay Id: |
MGI:6867832 |
Age: |
embryonic day 16.5 |
|
Note: |
Expression was restricted to very limited concentric zones of the hindlimb perichondrium. |
Specimen Label: |
3C |
Detected: |
true |
Specimen Num: |
8 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:32204 |
Assay Type: |
RNA in situ |
Annotation Date: |
2022-02-15 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3567624 |
Pattern: |
Regionally restricted |
Stage: |
TS24 |
Assay Id: |
MGI:6867832 |
Age: |
embryonic day 16.5 |
|
Note: |
Expression was restricted to very limited concentric zones of the femur perichondrium. The labeled areas were located slightly distally to the front of hypertrophic chondrocytes and overlying the cartilage 'elongation zone'. |
Specimen Label: |
3D |
Detected: |
true |
Specimen Num: |
9 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:32204 |
Assay Type: |
RNA in situ |
Annotation Date: |
2022-02-15 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:3567621 |
Pattern: |
Not Specified |
Stage: |
TS21 |
Assay Id: |
MGI:6867832 |
Age: |
embryonic day 13.5 |
|
Note: |
Proximal regions showed strong expression in the limb perichondrium. |
Specimen Label: |
3A |
Detected: |
true |
Specimen Num: |
6 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:32204 |
Assay Type: |
RNA in situ |
Annotation Date: |
2022-02-15 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:3567621 |
Pattern: |
Not Specified |
Stage: |
TS21 |
Assay Id: |
MGI:6867832 |
Age: |
embryonic day 13.5 |
|
Note: |
Proximal regions showed strong expression in the limb perichondrium. Rib perichondrium also showed expression. |
Specimen Label: |
3B |
Detected: |
true |
Specimen Num: |
7 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:1095394 |
Assay Type: |
RNA in situ |
Annotation Date: |
2015-04-29 |
Strength: |
Strong |
Sex: |
Female |
Emaps: |
EMAPS:2991528 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:5633975 |
Age: |
postnatal adult |
Image: |
8A/B mother |
Note: |
Expression is in the innermost cells of the wall encircling the entire implantation site. |
Specimen Label: |
8A/B mother |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:1095394 |
Assay Type: |
RNA in situ |
Annotation Date: |
2015-04-29 |
Strength: |
Strong |
Sex: |
Female |
Emaps: |
EMAPS:2991528 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:5633975 |
Age: |
postnatal adult |
|
Note: |
Expression is in the innermost cells of the wall encircling the entire implantation site. Weak labeling up to day E13.5. |
Specimen Label: |
not shown, mother |
Detected: |
true |
Specimen Num: |
14 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:1095394 |
Assay Type: |
RNA in situ |
Annotation Date: |
2015-04-29 |
Strength: |
Present |
Sex: |
Female |
Emaps: |
EMAPS:2991528 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:5633975 |
Age: |
postnatal adult |
Image: |
8C/D mother |
Note: |
Expression is in the antimesometrial and mesometrial poles. |
Specimen Label: |
8C/D mother |
Detected: |
true |
Specimen Num: |
5 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5633926 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2015-04-28 |
Strength: |
Strong |
Sex: |
Male |
Emaps: |
EMAPS:3576128 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:5633927 |
Age: |
postnatal adult |
Image: |
4A |
Note: |
Expression is in the basal layer. The intensity varied between different tubules. |
Specimen Label: |
4A |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5633926 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2015-04-28 |
Strength: |
Strong |
Sex: |
Male |
Emaps: |
EMAPS:3576128 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:5633927 |
Age: |
postnatal adult |
Image: |
4C |
Note: |
Expression in this mutant is the same as in wild-type. |
Specimen Label: |
4C |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5633926 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2015-04-28 |
Strength: |
Strong |
Sex: |
Male |
Emaps: |
EMAPS:3576128 |
Pattern: |
Widespread |
Stage: |
TS28 |
Assay Id: |
MGI:5633927 |
Age: |
postnatal adult |
Image: |
4E |
Note: |
Expression is in almost all the tubules. |
Specimen Label: |
4E |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:1095394 |
Assay Type: |
RNA in situ |
Annotation Date: |
2015-04-29 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1707419 |
Pattern: |
Not Specified |
Stage: |
TS19 |
Assay Id: |
MGI:5633975 |
Age: |
embryonic day 11.5 |
|
Note: |
Transcripts were seen in the cerbellum from E11.5-16.5. |
Specimen Label: |
not shown, E11.5 |
Detected: |
true |
Specimen Num: |
15 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:1095394 |
Assay Type: |
RNA in situ |
Annotation Date: |
2013-11-29 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:3187621 |
|
Stage: |
TS21 |
Assay Id: |
MGI:5520193 |
Age: |
embryonic day 13.5 |
|
|
Specimen Label: |
Table 1 13.5 |
Detected: |
false |
Specimen Num: |
4 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:1095394 |
Assay Type: |
RNA in situ |
Annotation Date: |
2013-11-29 |
Strength: |
Absent |
Sex: |
Not Specified |
Emaps: |
EMAPS:3187625 |
|
Stage: |
TS25 |
Assay Id: |
MGI:5520193 |
Age: |
embryonic day 17.5 |
|
|
Specimen Label: |
Table 1 17.5 |
Detected: |
false |
Specimen Num: |
5 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:1095394 |
Assay Type: |
RNA in situ |
Annotation Date: |
2015-04-29 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1796224 |
Pattern: |
Patchy |
Stage: |
TS24 |
Assay Id: |
MGI:5633975 |
Age: |
embryonic day 16.5 |
|
|
Specimen Label: |
not shown, E16.5 |
Detected: |
true |
Specimen Num: |
16 |
|
•
•
•
•
•
|
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|
Title: |
Annotation inferences using phylogenetic trees |
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Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
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Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
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Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
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Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
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Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
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Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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UniProt Feature |
Begin: |
1 |
Description: |
Receptor for retinol uptake STRA6 |
Type: |
chain |
End: |
670 |
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Gene |
Type: |
gene |
Organism: |
frog, African clawed |
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Gene |
Type: |
gene |
Organism: |
frog, African clawed |
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Publication |
First Author: |
Zhou C |
Year: |
2023 |
Journal: |
Cardiovasc Res |
Title: |
STRA6 is essential for induction of vascular smooth muscle lineages in human embryonic cardiac outflow tract development. |
Volume: |
119 |
Issue: |
5 |
Pages: |
1202-1217 |
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Publication |
First Author: |
Taneja R |
Year: |
1995 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Reexpression of retinoic acid receptor (RAR) gamma or overexpression of RAR alpha or RAR beta in RAR gamma-null F9 cells reveals a partial functional redundancy between the three RAR types. |
Volume: |
92 |
Issue: |
17 |
Pages: |
7854-8 |
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Publication |
First Author: |
Tice DA |
Year: |
2002 |
Journal: |
J Biol Chem |
Title: |
Synergistic induction of tumor antigens by Wnt-1 signaling and retinoic acid revealed by gene expression profiling. |
Volume: |
277 |
Issue: |
16 |
Pages: |
14329-35 |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
63
 |
Fragment?: |
true |
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HT Experiment |
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Experiment Type: |
RNA-Seq |
Study Type: |
WT vs. Mutant |
Source: |
GEO |
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Allele |
Name: |
stimulated by retinoic acid gene 6; gene trap OST353837, Lexicon Genetics |
Allele Type: |
Gene trapped |
Attribute String: |
Null/knockout, Reporter |
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DO Term |
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Strain |
Attribute String: |
mutant stock, gene trap |
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Strain |
Attribute String: |
mutant stock, gene trap |
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Genotype |
Symbol: |
Stra6/Stra6 |
Background: |
involves: 129S5/SvEvBrd * C57BL/6J |
Zygosity: |
hm |
Has Mutant Allele: |
true |
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Publication |
First Author: |
Slavotinek AM |
Year: |
2011 |
Journal: |
Mol Genet Metab |
Title: |
Eye development genes and known syndromes. |
Volume: |
104 |
Issue: |
4 |
Pages: |
448-56 |
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•
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•
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Publication |
First Author: |
Berry DC |
Year: |
2012 |
Journal: |
Mol Cell Biol |
Title: |
Cross talk between signaling and vitamin A transport by the retinol-binding protein receptor STRA6. |
Volume: |
32 |
Issue: |
15 |
Pages: |
3164-75 |
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•
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•
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Publication |
First Author: |
Amengual J |
Year: |
2012 |
Journal: |
J Biol Chem |
Title: |
Lecithin:retinol acyltransferase is critical for cellular uptake of vitamin A from serum retinol-binding protein. |
Volume: |
287 |
Issue: |
29 |
Pages: |
24216-27 |
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•
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Publication |
First Author: |
Guo H |
Year: |
2016 |
Journal: |
J Biol Chem |
Title: |
Lipocalin 2, a Regulator of Retinoid Homeostasis and Retinoid-mediated Thermogenic Activation in Adipose Tissue. |
Volume: |
291 |
Issue: |
21 |
Pages: |
11216-29 |
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•
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•
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Publication |
First Author: |
Moon J |
Year: |
2023 |
Journal: |
PNAS Nexus |
Title: |
Vitamin A deficiency compromises the barrier function of the retinal pigment epithelium. |
Volume: |
2 |
Issue: |
6 |
Pages: |
pgad167 |
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•
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Publication |
First Author: |
Nichol PF |
Year: |
2012 |
Journal: |
J Surg Res |
Title: |
Retinaldehyde dehydrogenase 2 is down-regulated during duodenal atresia formation in Fgfr2IIIb-/- mice. |
Volume: |
175 |
Issue: |
1 |
Pages: |
82-7 |
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•
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Publication |
First Author: |
Radhakrishnan R |
Year: |
2022 |
Journal: |
Nutrients |
Title: |
Mice Lacking the Systemic Vitamin A Receptor RBPR2 Show Decreased Ocular Retinoids and Loss of Visual Function. |
Volume: |
14 |
Issue: |
12 |
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•
•
•
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•
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Publication |
First Author: |
Kawai J |
Year: |
2001 |
Journal: |
Nature |
Title: |
Functional annotation of a full-length mouse cDNA collection. |
Volume: |
409 |
Issue: |
6821 |
Pages: |
685-90 |
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•
•
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•
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Publication |
First Author: |
Carninci P |
Year: |
2000 |
Journal: |
Genome Res |
Title: |
Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. |
Volume: |
10 |
Issue: |
10 |
Pages: |
1617-30 |
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•
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Publication |
First Author: |
Carninci P |
Year: |
1999 |
Journal: |
Methods Enzymol |
Title: |
High-efficiency full-length cDNA cloning. |
Volume: |
303 |
|
Pages: |
19-44 |
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•
•
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•
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Publication |
First Author: |
Shibata K |
Year: |
2000 |
Journal: |
Genome Res |
Title: |
RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. |
Volume: |
10 |
Issue: |
11 |
Pages: |
1757-71 |
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•
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Publication |
First Author: |
Katayama S |
Year: |
2005 |
Journal: |
Science |
Title: |
Antisense transcription in the mammalian transcriptome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1564-6 |
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•
•
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•
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Publication |
First Author: |
Gerhard DS |
Year: |
2004 |
Journal: |
Genome Res |
Title: |
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |
Volume: |
14 |
Issue: |
10B |
Pages: |
2121-7 |
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•
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Publication |
First Author: |
Church DM |
Year: |
2009 |
Journal: |
PLoS Biol |
Title: |
Lineage-specific biology revealed by a finished genome assembly of the mouse. |
Volume: |
7 |
Issue: |
5 |
Pages: |
e1000112 |
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