Type |
Details |
Score |
Allele |
Name: |
VCP nuclear cofactor family member 2; gene trap IST13136G8, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
VCP nuclear cofactor family member 1; gene trap IST13352D8, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
VCP nuclear cofactor family member 1; gene trap IST13352E8, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
VCP nuclear cofactor family member 1; gene trap IST13808A11, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
VCP nuclear cofactor family member 2; gene trap IST13865A3, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
VCP nuclear cofactor family member 1; gene trap IST14095D2, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
VCP nuclear cofactor family member 2; gene trap IST14173G6, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
VCP nuclear cofactor family member 2; gene trap IST14246C4, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
VCP nuclear cofactor family member 1; gene trap IST14564C6, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Allele |
Name: |
VCP nuclear cofactor family member 2; gene trap IST14514F4, Texas A&M Institute for Genomic Medicine |
Allele Type: |
Gene trapped |
|
|
•
•
•
•
•
|
Genotype |
Symbol: |
Vcf1/Vcf1 |
Background: |
B6JTyr;B6N-Vcf1/Wtsi |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Madsen L |
Year: |
2011 |
Journal: |
PLoS One |
Title: |
The tissue-specific Rep8/UBXD6 tethers p97 to the endoplasmic reticulum membrane for degradation of misfolded proteins. |
Volume: |
6 |
Issue: |
9 |
Pages: |
e25061 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
UBX domain-containing protein 8 is involved in endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins, possibly by tethering VCP to the endoplasmic reticulum membrane []. |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, mutant strain, transgenic |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Tg(Thy1-VCP*A232E)BMaki/? |
Background: |
involves: C57BL/6J |
Zygosity: |
ot |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Strain |
Attribute String: |
mutant strain, targeted mutation, spontaneous mutation |
|
•
•
•
•
•
|
Publication |
First Author: |
Fröhlich KU |
Year: |
1991 |
Journal: |
J Cell Biol |
Title: |
Yeast cell cycle protein CDC48p shows full-length homology to the mammalian protein VCP and is a member of a protein family involved in secretion, peroxisome formation, and gene expression. |
Volume: |
114 |
Issue: |
3 |
Pages: |
443-53 |
|
•
•
•
•
•
|
Publication |
First Author: |
Cloutier JF |
Year: |
1996 |
Journal: |
EMBO J |
Title: |
Association of inhibitory tyrosine protein kinase p50csk with protein tyrosine phosphatase PEP in T cells and other hemopoietic cells. |
Volume: |
15 |
Issue: |
18 |
Pages: |
4909-18 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kyogoku C |
Year: |
2004 |
Journal: |
Am J Hum Genet |
Title: |
Genetic association of the R620W polymorphism of protein tyrosine phosphatase PTPN22 with human SLE. |
Volume: |
75 |
Issue: |
3 |
Pages: |
504-7 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
Tyrosine-protein phosphatase non-receptor type 22 (PTPN22) acts as negative regulator of T-cell receptor (TCR) signalling by direct dephosphorylation of the Src family kinases LCK and FYN, ITAMs of the TCRz/CD3 complex, as well as ZAP70, VAV, VCP and other key signalling molecules [].Variations of the PTPN22 gene affects the susceptibility of systemic lupus erythematosus (SLE) []. |
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
GSE34896 |
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
277
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
277
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Berger BS |
Year: |
2017 |
Journal: |
EMBO Rep |
Title: |
Parkinson's disease-associated receptor GPR37 is an ER chaperone for LRP6. |
Volume: |
18 |
Issue: |
5 |
Pages: |
712-725 |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
Mus caroli |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
Mus caroli |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
Mus pahari |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
Mus pahari |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
Mus spretus |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
Mus spretus |
|
•
•
•
•
•
|
Publication |
First Author: |
Dolan PJ |
Year: |
2011 |
Journal: |
FEBS Lett |
Title: |
Decreases in valosin-containing protein result in increased levels of tau phosphorylated at Ser262/356. |
Volume: |
585 |
Issue: |
21 |
Pages: |
3424-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Luisier R |
Year: |
2018 |
Journal: |
Nat Commun |
Title: |
Intron retention and nuclear loss of SFPQ are molecular hallmarks of ALS. |
Volume: |
9 |
Issue: |
1 |
Pages: |
2010 |
|
•
•
•
•
•
|
Publication |
First Author: |
McGoldrick P |
Year: |
2013 |
Journal: |
Biochim Biophys Acta |
Title: |
Rodent models of amyotrophic lateral sclerosis. |
Volume: |
1832 |
Issue: |
9 |
Pages: |
1421-36 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tang X |
Year: |
2023 |
Journal: |
iScience |
Title: |
EMC3 regulates mesenchymal cell survival via control of the mitotic spindle assembly. |
Volume: |
26 |
Issue: |
1 |
Pages: |
105667 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ahmed M |
Year: |
2016 |
Journal: |
Sci Transl Med |
Title: |
Targeting protein homeostasis in sporadic inclusion body myositis. |
Volume: |
8 |
Issue: |
331 |
Pages: |
331ra41 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhang H |
Year: |
2000 |
Journal: |
DNA Cell Biol |
Title: |
VCP, a weak ATPase involved in multiple cellular events, interacts physically with BRCA1 in the nucleus of living cells. |
Volume: |
19 |
Issue: |
5 |
Pages: |
253-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kina S |
Year: |
2007 |
Journal: |
Eur J Neurosci |
Title: |
Involvement of protein-tyrosine phosphatase PTPMEG in motor learning and cerebellar long-term depression. |
Volume: |
26 |
Issue: |
8 |
Pages: |
2269-78 |
|
•
•
•
•
•
|
Publication |
First Author: |
Jing M |
Year: |
2007 |
Journal: |
J Virol |
Title: |
Degradation of tyrosine phosphatase PTPN3 (PTPH1) by association with oncogenic human papillomavirus E6 proteins. |
Volume: |
81 |
Issue: |
5 |
Pages: |
2231-9 |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
Tyrosine-protein phosphatase non-receptor type-4 (PTPN4, also known as PTPMEG) is a cytoplasmic protein-tyrosine phosphatase (PTP) thought to play a role in cerebellar function. PTPMEG-knockout mice have impaired memory formation and cerebellar long-term depression []. Tyrosine-protein phosphatase non-receptor type-3 (PTPN3/PTPH1) is a membrane-associated PTP implicated in regulating tyrosine phosphorylation of growth factor receptors, p97 VCP (valosin-containing protein, or Cdc48 in Saccharomyces cerevisiae), and HBV (Hepatitis B Virus) gene expression; it is mutated in a subset of colon cancers []. PTPN3 and PTPN4 contain an N-terminal FERM domain, a middle PDZ domain, and a C-terminal phosphatase domain. Tyrosine-protein phosphatase 1/PTP1 from nematodes is also included in this entry. The FERM domain has a cloverleaf tripart structure composed of: (1) FERM_N (A-lobe or F1); (2) FERM_M (B-lobe, or F2); and (3) FERM_C (C-lobe or F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. Like most other ERM members they have a phosphoinositide-binding site in their FERM domain. The FERM C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites [, ]. |
|
•
•
•
•
•
|
Publication |
First Author: |
Humphrey J |
Year: |
2020 |
Journal: |
Nucleic Acids Res |
Title: |
FUS ALS-causative mutations impair FUS autoregulation and splicing factor networks through intron retention. |
Volume: |
48 |
Issue: |
12 |
Pages: |
6889-6905 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zoabi M |
Year: |
2020 |
Journal: |
J Biol Chem |
Title: |
Methyltransferase-like 21C (METTL21C) methylates alanine tRNA synthetase at Lys-943 in muscle tissue. |
Volume: |
295 |
Issue: |
33 |
Pages: |
11822-11832 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhou N |
Year: |
2020 |
Journal: |
Sci Rep |
Title: |
Novel genomic targets of valosin-containing protein in protecting pathological cardiac hypertrophy. |
Volume: |
10 |
Issue: |
1 |
Pages: |
18098 |
|
•
•
•
•
•
|
Publication |
First Author: |
Sun X |
Year: |
2021 |
Journal: |
Cells |
Title: |
Functional Inhibition of Valosin-Containing Protein Induces Cardiac Dilation and Dysfunction in a New Dominant-Negative Transgenic Mouse Model. |
Volume: |
10 |
Issue: |
11 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Nalbandian A |
Year: |
2017 |
Journal: |
Inflammation |
Title: |
Activation of the NLRP3 Inflammasome Is Associated with Valosin-Containing Protein Myopathy. |
Volume: |
40 |
Issue: |
1 |
Pages: |
21-41 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhou N |
Year: |
2020 |
Journal: |
Redox Biol |
Title: |
Genomic characterization reveals novel mechanisms underlying the valosin-containing protein-mediated cardiac protection against heart failure. |
Volume: |
36 |
|
Pages: |
101662 |
|
•
•
•
•
•
|
Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
|
•
•
•
•
•
|
Publication |
First Author: |
Miller CG |
Year: |
1995 |
Journal: |
Cell Immunol |
Title: |
Severe and prolonged inflammatory response to localized cowpox virus infection in footpads of C5-deficient mice: investigation of the role of host complement in poxvirus pathogenesis. |
Volume: |
162 |
Issue: |
2 |
Pages: |
326-32 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics and the Wellcome Trust Sanger Institute Mouse Genetics Project (MGP) |
Year: |
2011 |
Journal: |
Database Release |
Title: |
Obtaining and Loading Phenotype Annotations from the Wellcome Trust Sanger Institute (WTSI) Mouse Resources Portal |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Ko MS |
Year: |
1998 |
Journal: |
Hum Mol Genet |
Title: |
Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. |
Volume: |
7 |
Issue: |
12 |
Pages: |
1967-78 |
|
•
•
•
•
•
|
Publication |
First Author: |
The Jackson Laboratory DNA Panel Mapping Resource |
Year: |
1999 |
Journal: |
Database Release |
Title: |
JAX Interspecific Backcross BSS and BSB Public Mapping Data |
|
|
|
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
802
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Kitano K |
Year: |
2006 |
Journal: |
Acta Crystallogr Sect F Struct Biol Cryst Commun |
Title: |
Structure of dimerized radixin FERM domain suggests a novel masking motif in C-terminal residues 295-304. |
Volume: |
62 |
Issue: |
Pt 4 |
Pages: |
340-5 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tepass U |
Year: |
2009 |
Journal: |
Curr Opin Genet Dev |
Title: |
FERM proteins in animal morphogenesis. |
Volume: |
19 |
Issue: |
4 |
Pages: |
357-67 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
334
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
556
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
556
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Friedel RH |
Year: |
2007 |
Journal: |
Brief Funct Genomic Proteomic |
Title: |
EUCOMM--the European conditional mouse mutagenesis program. |
Volume: |
6 |
Issue: |
3 |
Pages: |
180-5 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
913
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
926
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Velocigene |
Year: |
2008 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the KOMP project by Velocigene (Regeneron Pharmaceuticals) |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Ingham NJ |
Year: |
2019 |
Journal: |
PLoS Biol |
Title: |
Mouse screen reveals multiple new genes underlying mouse and human hearing loss. |
Volume: |
17 |
Issue: |
4 |
Pages: |
e3000194 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wellcome Trust Sanger Institute |
Year: |
2010 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the EUCOMM and EUCOMMTools projects by the Wellcome Trust Sanger Institute |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Ko MS |
Year: |
2000 |
Journal: |
Development |
Title: |
Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. |
Volume: |
127 |
Issue: |
8 |
Pages: |
1737-49 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2003 |
Journal: |
Database Download |
Title: |
Integrating Computational Gene Models into the Mouse Genome Informatics (MGI) Database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Adams DJ |
Year: |
2024 |
Journal: |
Nature |
Title: |
Genetic determinants of micronucleus formation in vivo. |
Volume: |
627 |
Issue: |
8002 |
Pages: |
130-136 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Function or Process or Component Unknown following Literature Review |
|
|
|
|
•
•
•
•
•
|