| Type |
Details |
Score |
| Publication |
| First Author: |
Patel T |
| Year: |
2022 |
| Journal: |
Nat Commun |
| Title: |
Transcriptional dynamics of murine motor neuron maturation in vivo and in vitro. |
| Volume: |
13 |
| Issue: |
1 |
| Pages: |
5427 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Abernathy DG |
| Year: |
2017 |
| Journal: |
Cell Stem Cell |
| Title: |
MicroRNAs Induce a Permissive Chromatin Environment that Enables Neuronal Subtype-Specific Reprogramming of Adult Human Fibroblasts. |
| Volume: |
21 |
| Issue: |
3 |
| Pages: |
332-348.e9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Bondue A |
| Year: |
2011 |
| Journal: |
J Cell Biol |
| Title: |
Defining the earliest step of cardiovascular progenitor specification during embryonic stem cell differentiation. |
| Volume: |
192 |
| Issue: |
5 |
| Pages: |
751-65 |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
373
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
371
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Peng H |
| Year: |
2014 |
| Journal: |
Cancer Res |
| Title: |
LIMD2 is a small LIM-only protein overexpressed in metastatic lesions that regulates cell motility and tumor progression by directly binding to and activating the integrin-linked kinase. |
| Volume: |
74 |
| Issue: |
5 |
| Pages: |
1390-1403 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Matthews JM |
| Year: |
2013 |
| Journal: |
Nat Rev Cancer |
| Title: |
LIM-domain-only proteins in cancer. |
| Volume: |
13 |
| Issue: |
2 |
| Pages: |
111-22 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Domain |
| Description: |
In general, LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domain-containing proteins have diverse cellular roles such as regulators of gene expression, cyto-architecture, cell adhesion, cell motility, and signal transduction. LIM domain-containing proteins have been shown to be key molecules in a wide variety of human cancers [].LIMD2 binds directly to the kinase domain of integrin-linked kinase (ILK) near the active site and strongly activated ILK kinase activity. Its LIM-domain structure is highly related to LIM1 of PINCH1, a core component of the integrin-linked kinase-parvin-pinch complex []. |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Morcillo P |
| Year: |
1997 |
| Journal: |
Genes Dev |
| Title: |
Chip, a widely expressed chromosomal protein required for segmentation and activity of a remote wing margin enhancer in Drosophila. |
| Volume: |
11 |
| Issue: |
20 |
| Pages: |
2729-40 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Franks RG |
| Year: |
2002 |
| Journal: |
Development |
| Title: |
SEUSS, a member of a novel family of plant regulatory proteins, represses floral homeotic gene expression with LEUNIG. |
| Volume: |
129 |
| Issue: |
1 |
| Pages: |
253-63 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Dodgson J |
| Year: |
2009 |
| Journal: |
Eukaryot Cell |
| Title: |
Functional genomics of adhesion, invasion, and mycelial formation in Schizosaccharomyces pombe. |
| Volume: |
8 |
| Issue: |
8 |
| Pages: |
1298-306 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Lin CJ |
| Year: |
2015 |
| Journal: |
PLoS Pathog |
| Title: |
Transcription Factor SomA Is Required for Adhesion, Development and Virulence of the Human Pathogen Aspergillus fumigatus. |
| Volume: |
11 |
| Issue: |
11 |
| Pages: |
e1005205 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
This entry includes the LIM-domain binding proteins and similar proteins, such as protein Chip from Drosophila, SEUSS from Arabidopsis and Adn1 from fission yeasts. The LIM-domain binding protein, binds to the LIM domain of LIM homeodomain proteins which are transcriptional regulators of development. Nuclear LIM interactor (NLI) / LIM domain-binding protein 1 (LDB1) is located in the nuclei of neuronal cells during development, it is co-expressed with Isl1 in early motor neuron differentiation and has a suggested role in the Isl1 dependent development of motor neurons []. It is suggested that these proteins act synergistically to enhance transcriptional efficiency by acting as co-factors for LIM homeodomain and Otx class transcription factors, both of which have essential roles in development [].The Drosophila protein Chip () is required for segmentation and activity of a remote wing margin enhancer []. Chip is a ubiquitous chromosomal factor required for normal expression of diverse genes at many stages of development. It is suggested that Chip cooperates with different LIM domain proteins and other factors to structurally support remote enhancer-promoter interactions [].SEUSS is a transcriptional corepressor from Arabidopsis thaliana []. SEUSS contains two glutamine-rich domains and a highly conserved domain that shares sequence identity with the dimerisation domain of the LIM-domain-binding transcription co-regulators in animals [].Several proteins in this entry are transcriptional regulators in fungi. In fission yeasts, adhesion defective protein 1 (Adn1) is a probable transcriptional regulator involved in cell adhesion []. In Aspergillus fumigatus, the transcriptional activator ptaB forms a complex with somA to control biofilm formation []. In Candida albicans, MFG1 (morphogenetic regulator of filamentous growth protein 1) has a role in all morphogenetically distinct forms of filamentous growth, including invasive growth and biofilm formation, probably by forming a complex with FLO8 and MSS1 which binds the promoter of the FLO11 gene []. |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Schaffer AE |
| Year: |
2013 |
| Journal: |
PLoS Genet |
| Title: |
Nkx6.1 controls a gene regulatory network required for establishing and maintaining pancreatic Beta cell identity. |
| Volume: |
9 |
| Issue: |
1 |
| Pages: |
e1003274 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Wang Z |
| Year: |
2021 |
| Journal: |
Front Cell Dev Biol |
| Title: |
Smyd1 Orchestrates Early Heart Development Through Positive and Negative Gene Regulation. |
| Volume: |
9 |
|
| Pages: |
654682 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Al-Mosawie A |
| Year: |
2007 |
| Journal: |
Eur J Neurosci |
| Title: |
Heterogeneity of V2-derived interneurons in the adult mouse spinal cord. |
| Volume: |
26 |
| Issue: |
11 |
| Pages: |
3003-15 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
van Eif VWW |
| Year: |
2019 |
| Journal: |
Development |
| Title: |
Transcriptome analysis of mouse and human sinoatrial node cells reveals a conserved genetic program. |
| Volume: |
146 |
| Issue: |
8 |
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Nelander J |
| Year: |
2009 |
| Journal: |
Gene Expr Patterns |
| Title: |
Organization of the human embryonic ventral mesencephalon. |
| Volume: |
9 |
| Issue: |
8 |
| Pages: |
555-61 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Lee S |
| Year: |
2012 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Fusion protein Isl1-Lhx3 specifies motor neuron fate by inducing motor neuron genes and concomitantly suppressing the interneuron programs. |
| Volume: |
109 |
| Issue: |
9 |
| Pages: |
3383-8 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Heddad Masson M |
| Year: |
2014 |
| Journal: |
Endocrinology |
| Title: |
Foxa1 and Foxa2 regulate α-cell differentiation, glucagon biosynthesis, and secretion. |
| Volume: |
155 |
| Issue: |
10 |
| Pages: |
3781-92 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Schang AL |
| Year: |
2013 |
| Journal: |
Neuroendocrinology |
| Title: |
Identification and analysis of two novel sites of rat GnRH receptor gene promoter activity: the pineal gland and retina. |
| Volume: |
97 |
| Issue: |
2 |
| Pages: |
115-31 |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
411
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
373
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ryan O |
| Year: |
2012 |
| Journal: |
Science |
| Title: |
Global gene deletion analysis exploring yeast filamentous growth. |
| Volume: |
337 |
| Issue: |
6100 |
| Pages: |
1353-6 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Sridhar VV |
| Year: |
2004 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Transcriptional repression of target genes by LEUNIG and SEUSS, two interacting regulatory proteins for Arabidopsis flower development. |
| Volume: |
101 |
| Issue: |
31 |
| Pages: |
11494-9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Lewcock JW |
| Year: |
2007 |
| Journal: |
Neuron |
| Title: |
The ubiquitin ligase Phr1 regulates axon outgrowth through modulation of microtubule dynamics. |
| Volume: |
56 |
| Issue: |
4 |
| Pages: |
604-20 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Hummel D |
| Year: |
2022 |
| Journal: |
Development |
| Title: |
Celsr1 suppresses Wnt5a-mediated chemoattraction to prevent incorrect rostral migration of facial branchiomotor neurons. |
| Volume: |
149 |
| Issue: |
22 |
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Shirasaki R |
| Year: |
2006 |
| Journal: |
Neuron |
| Title: |
FGF as a target-derived chemoattractant for developing motor axons genetically programmed by the LIM code. |
| Volume: |
50 |
| Issue: |
6 |
| Pages: |
841-53 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Whitman MC |
| Year: |
2022 |
| Journal: |
Dev Biol |
| Title: |
TWIST1, a gene associated with Saethre-Chotzen syndrome, regulates extraocular muscle organization in mouse. |
| Volume: |
490 |
|
| Pages: |
126-133 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Lombardi R |
| Year: |
2009 |
| Journal: |
Circ Res |
| Title: |
Genetic fate mapping identifies second heart field progenitor cells as a source of adipocytes in arrhythmogenic right ventricular cardiomyopathy. |
| Volume: |
104 |
| Issue: |
9 |
| Pages: |
1076-84 |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
128
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Latremoliere A |
| Year: |
2018 |
| Journal: |
Cell Rep |
| Title: |
Neuronal-Specific TUBB3 Is Not Required for Normal Neuronal Function but Is Essential for Timely Axon Regeneration. |
| Volume: |
24 |
| Issue: |
7 |
| Pages: |
1865-1879.e9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Toren E |
| Year: |
2023 |
| Journal: |
Mol Metab |
| Title: |
The SSBP3 co-regulator is required for glucose homeostasis, pancreatic islet architecture, and beta-cell identity. |
| Volume: |
76 |
|
| Pages: |
101785 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Piccand J |
| Year: |
2019 |
| Journal: |
Mol Metab |
| Title: |
Rfx6 promotes the differentiation of peptide-secreting enteroendocrine cells while repressing genetic programs controlling serotonin production. |
| Volume: |
29 |
|
| Pages: |
24-39 |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
547
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
77
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
158
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
156
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
375
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
341
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
668
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
193
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
194
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
193
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
591
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
208
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
279
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
289
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
204
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
280
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
325
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
165
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
398
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
652
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
352
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
564
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
480
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
613
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
145
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
121
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
72
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
164
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
533
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
194
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
279
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
165
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
84
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
420
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
68
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
60
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
144
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
387
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
1062
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
193
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
279
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
84
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
292
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
151
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
156
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
228
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
238
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
112
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
65
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
485
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
234
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
323
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
898
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
325
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
216
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
205
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
290
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
309
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
280
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
60
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
927
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
591
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
81
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
478
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
564
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
137
 |
| Fragment?: |
true |
|
•
•
•
•
•
|