| Type |
Details |
Score |
| Publication |
| First Author: |
McKinsey GL |
| Year: |
2013 |
| Journal: |
Neuron |
| Title: |
Dlx1&2-dependent expression of Zfhx1b (Sip1, Zeb2) regulates the fate switch between cortical and striatal interneurons. |
| Volume: |
77 |
| Issue: |
1 |
| Pages: |
83-98 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Zhao H |
| Year: |
2008 |
| Journal: |
Dev Biol |
| Title: |
TGF-beta type I receptor Alk5 regulates tooth initiation and mandible patterning in a type II receptor-independent manner. |
| Volume: |
320 |
| Issue: |
1 |
| Pages: |
19-29 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Funato N |
| Year: |
2016 |
| Journal: |
Sci Rep |
| Title: |
Specification of jaw identity by the Hand2 transcription factor. |
| Volume: |
6 |
|
| Pages: |
28405 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Jepsen K |
| Year: |
2007 |
| Journal: |
Nature |
| Title: |
SMRT-mediated repression of an H3K27 demethylase in progression from neural stem cell to neuron. |
| Volume: |
450 |
| Issue: |
7168 |
| Pages: |
415-9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Liu Z |
| Year: |
2019 |
| Journal: |
Cereb Cortex |
| Title: |
Sp9 Regulates Medial Ganglionic Eminence-Derived Cortical Interneuron Development. |
| Volume: |
29 |
| Issue: |
6 |
| Pages: |
2653-2667 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Colombo E |
| Year: |
2007 |
| Journal: |
J Neurosci |
| Title: |
Inactivation of Arx, the murine ortholog of the X-linked lissencephaly with ambiguous genitalia gene, leads to severe disorganization of the ventral telencephalon with impaired neuronal migration and differentiation. |
| Volume: |
27 |
| Issue: |
17 |
| Pages: |
4786-98 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Biswas S |
| Year: |
2023 |
| Journal: |
Dev Biol |
| Title: |
The transcription regulator Lmo3 is required for the development of medial ganglionic eminence derived neurons in the external globus pallidus. |
| Volume: |
503 |
|
| Pages: |
10-24 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Nishimura S |
| Year: |
2015 |
| Journal: |
PLoS One |
| Title: |
Functional synergy between cholecystokinin receptors CCKAR and CCKBR in mammalian brain development. |
| Volume: |
10 |
| Issue: |
4 |
| Pages: |
e0124295 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mi D |
| Year: |
2018 |
| Journal: |
Science |
| Title: |
Early emergence of cortical interneuron diversity in the mouse embryo. |
| Volume: |
360 |
| Issue: |
6384 |
| Pages: |
81-85 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Toyoda S |
| Year: |
2009 |
| Journal: |
Dev Biol |
| Title: |
Sohlh2 affects differentiation of KIT positive oocytes and spermatogonia. |
| Volume: |
325 |
| Issue: |
1 |
| Pages: |
238-48 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Wen Y |
| Year: |
2021 |
| Journal: |
Mol Neurobiol |
| Title: |
Transcription Factor VAX1 Regulates the Regional Specification of the Subpallium Through Repressing Gsx2. |
| Volume: |
58 |
| Issue: |
8 |
| Pages: |
3729-3744 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Xu J |
| Year: |
2019 |
| Journal: |
Elife |
| Title: |
Hedgehog signaling patterns the oral-aboral axis of the mandibular arch. |
| Volume: |
8 |
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Flandin P |
| Year: |
2010 |
| Journal: |
J Neurosci |
| Title: |
The progenitor zone of the ventral medial ganglionic eminence requires Nkx2-1 to generate most of the globus pallidus but few neocortical interneurons. |
| Volume: |
30 |
| Issue: |
8 |
| Pages: |
2812-23 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Li F |
| Year: |
2017 |
| Journal: |
Mol Cell Biol |
| Title: |
ISLET1-Dependent β-Catenin/Hedgehog Signaling Is Required for Outgrowth of the Lower Jaw. |
| Volume: |
37 |
| Issue: |
8 |
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Sawai A |
| Year: |
2022 |
| Journal: |
Elife |
| Title: |
PRC1 sustains the integrity of neural fate in the absence of PRC2 function. |
| Volume: |
11 |
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Asgarian Z |
| Year: |
2022 |
| Journal: |
Nat Commun |
| Title: |
MTG8 interacts with LHX6 to specify cortical interneuron subtype identity. |
| Volume: |
13 |
| Issue: |
1 |
| Pages: |
5217 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Sandberg M |
| Year: |
2016 |
| Journal: |
Neuron |
| Title: |
Transcriptional Networks Controlled by NKX2-1 in the Development of Forebrain GABAergic Neurons. |
| Volume: |
91 |
| Issue: |
6 |
| Pages: |
1260-1275 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Magnani D |
| Year: |
2015 |
| Journal: |
Hum Mol Genet |
| Title: |
The ciliogenic transcription factor Rfx3 is required for the formation of the thalamocortical tract by regulating the patterning of prethalamus and ventral telencephalon. |
| Volume: |
24 |
| Issue: |
9 |
| Pages: |
2578-93 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Maynard TM |
| Year: |
2003 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
A comprehensive analysis of 22q11 gene expression in the developing and adult brain. |
| Volume: |
100 |
| Issue: |
24 |
| Pages: |
14433-8 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Yu C |
| Year: |
2013 |
| Journal: |
Science |
| Title: |
CRL4 complex regulates mammalian oocyte survival and reprogramming by activation of TET proteins. |
| Volume: |
342 |
| Issue: |
6165 |
| Pages: |
1518-21 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Hunter CS |
| Year: |
2013 |
| Journal: |
Diabetes |
| Title: |
Islet α-, β-, and δ-cell development is controlled by the Ldb1 coregulator, acting primarily with the islet-1 transcription factor. |
| Volume: |
62 |
| Issue: |
3 |
| Pages: |
875-86 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mo Q |
| Year: |
2017 |
| Journal: |
JCI Insight |
| Title: |
Identification and characterization of a supraclavicular brown adipose tissue in mice. |
| Volume: |
2 |
| Issue: |
11 |
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
VanDunk C |
| Year: |
2011 |
| Journal: |
J Neurosci |
| Title: |
Development, maturation, and necessity of transcription factors in the mouse suprachiasmatic nucleus. |
| Volume: |
31 |
| Issue: |
17 |
| Pages: |
6457-67 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Lee DR |
| Year: |
2022 |
| Journal: |
Elife |
| Title: |
Transcriptional heterogeneity of ventricular zone cells in the ganglionic eminences of the mouse forebrain. |
| Volume: |
11 |
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Long JE |
| Year: |
2009 |
| Journal: |
Cereb Cortex |
| Title: |
Dlx1&2 and Mash1 transcription factors control MGE and CGE patterning and differentiation through parallel and overlapping pathways. |
| Volume: |
19 Suppl 1 |
|
| Pages: |
i96-106 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Fu H |
| Year: |
2009 |
| Journal: |
J Neurosci |
| Title: |
A genome-wide screen for spatially restricted expression patterns identifies transcription factors that regulate glial development. |
| Volume: |
29 |
| Issue: |
36 |
| Pages: |
11399-408 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mayer C |
| Year: |
2018 |
| Journal: |
Nature |
| Title: |
Developmental diversification of cortical inhibitory interneurons. |
| Volume: |
555 |
| Issue: |
7697 |
| Pages: |
457-462 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Carninci P |
| Year: |
2005 |
| Journal: |
Science |
| Title: |
The transcriptional landscape of the mammalian genome. |
| Volume: |
309 |
| Issue: |
5740 |
| Pages: |
1559-63 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Shimogori T |
| Year: |
2010 |
| Journal: |
Nat Neurosci |
| Title: |
A genomic atlas of mouse hypothalamic development. |
| Volume: |
13 |
| Issue: |
6 |
| Pages: |
767-75 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Shimizu H |
| Year: |
2013 |
| Journal: |
PLoS One |
| Title: |
The AERO system: a 3D-like approach for recording gene expression patterns in the whole mouse embryo. |
| Volume: |
8 |
| Issue: |
10 |
| Pages: |
e75754 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Chung YC |
| Year: |
2011 |
| Journal: |
Gene Expr Patterns |
| Title: |
Screening large numbers of expression patterns of transcription factors in late stages of the mouse thymus. |
| Volume: |
11 |
| Issue: |
1-2 |
| Pages: |
84-92 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Wiese CB |
| Year: |
2012 |
| Journal: |
Front Neurosci |
| Title: |
A genome-wide screen to identify transcription factors expressed in pelvic Ganglia of the lower urinary tract. |
| Volume: |
6 |
|
| Pages: |
130 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Guo G |
| Year: |
2010 |
| Journal: |
Dev Cell |
| Title: |
Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst. |
| Volume: |
18 |
| Issue: |
4 |
| Pages: |
675-85 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Yokoyama S |
| Year: |
2009 |
| Journal: |
Dev Cell |
| Title: |
A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. |
| Volume: |
17 |
| Issue: |
6 |
| Pages: |
836-48 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
The Gene Ontology Consortium |
| Year: |
2016 |
|
| Title: |
Automatic assignment of GO terms using logical inference, based on on inter-ontology links |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Gray PA |
| Year: |
2004 |
| Journal: |
Science |
| Title: |
Mouse brain organization revealed through direct genome-scale TF expression analysis. |
| Volume: |
306 |
| Issue: |
5705 |
| Pages: |
2255-7 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Thompson CL |
| Year: |
2014 |
| Journal: |
Neuron |
| Title: |
A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. |
| Volume: |
83 |
| Issue: |
2 |
| Pages: |
309-323 |
|
•
•
•
•
•
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| Publication |
| First Author: |
Visel A |
| Year: |
2004 |
| Journal: |
Nucleic Acids Res |
| Title: |
GenePaint.org: an atlas of gene expression patterns in the mouse embryo. |
| Volume: |
32 |
| Issue: |
Database issue |
| Pages: |
D552-6 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Wellcome Trust Sanger Institute |
| Year: |
2009 |
| Journal: |
MGI Direct Data Submission |
| Title: |
Alleles produced for the KOMP project by the Wellcome Trust Sanger Institute |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
GUDMAP Consortium |
| Year: |
2004 |
| Journal: |
www.gudmap.org |
| Title: |
GUDMAP: the GenitoUrinary Development Molecular Anatomy Project |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
DDB, FB, MGI, GOA, ZFIN curators |
| Year: |
2001 |
|
| Title: |
Gene Ontology annotation through association of InterPro records with GO terms |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Magdaleno S |
| Year: |
2006 |
| Journal: |
PLoS Biol |
| Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
| Volume: |
4 |
| Issue: |
4 |
| Pages: |
e86 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2003 |
|
| Title: |
MGI Sequence Curation Reference |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
GemPharmatech |
| Year: |
2020 |
|
| Title: |
GemPharmatech Website. |
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•
•
•
•
•
|
| Publication |
| First Author: |
Skarnes WC |
| Year: |
2011 |
| Journal: |
Nature |
| Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
| Volume: |
474 |
| Issue: |
7351 |
| Pages: |
337-42 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
UniProt-GOA |
| Year: |
2012 |
|
| Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
GOA curators |
| Year: |
2016 |
|
| Title: |
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
| Year: |
2004 |
| Journal: |
Database Release |
| Title: |
Mouse T31 Radiation Hybrid Data Load |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
The Gene Ontology Consortium |
| Year: |
2010 |
|
| Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2010 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
MGI Genome Annotation Group and UniGene Staff |
| Year: |
2015 |
| Journal: |
Database Download |
| Title: |
MGI-UniGene Interconnection Effort |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
| Year: |
2010 |
|
| Title: |
Annotation inferences using phylogenetic trees |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
| Year: |
2000 |
| Journal: |
Database Release |
| Title: |
Entrez Gene Load |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Allen Institute for Brain Science |
| Year: |
2004 |
| Journal: |
Allen Institute |
| Title: |
Allen Brain Atlas: mouse riboprobes |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2009 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
| Year: |
2010 |
| Journal: |
Database Download |
| Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Group |
| Year: |
2003 |
| Journal: |
Database Procedure |
| Title: |
Automatic Encodes (AutoE) Reference |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Bairoch A |
| Year: |
1999 |
| Journal: |
Database Release |
| Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
|
| Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics |
| Year: |
2010 |
| Journal: |
Database Release |
| Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
|
| Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2009 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
|
|
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
367
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
68
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
188
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
346
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| HT Experiment |
|
| Experiment Type: |
RNA-Seq |
| Study Type: |
WT vs. Mutant |
| Source: |
GEO |
|
•
•
•
•
•
|
| HT Experiment |
|
| Experiment Type: |
transcription profiling by array |
| Study Type: |
WT vs. Mutant |
| Source: |
GEO |
|
•
•
•
•
•
|
| Allele |
| Name: |
transgene insertion MJ80, GENSAT Project at Rockefeller University |
| Allele Type: |
Transgenic |
| Attribute String: |
Reporter |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
mutant stock, transgenic |
|
•
•
•
•
•
|
| Allele |
| Name: |
LIM homeobox protein 8; targeted mutation 1, Akio Wanaka |
| Allele Type: |
Targeted |
| Attribute String: |
Null/knockout, Reporter |
|
•
•
•
•
•
|
| Allele |
| Name: |
transgene insertion 1, Nicoletta Kessaris |
| Allele Type: |
Transgenic |
| Attribute String: |
Recombinase |
|
•
•
•
•
•
|
| Genotype |
| Symbol: |
Lhx8/Lhx8 |
| Background: |
involves: 129S2/SvPas * C57BL/6J |
| Zygosity: |
hm |
| Has Mutant Allele: |
true |
|
•
•
•
•
•
|
| HT Experiment |
| Series Id: |
GSE71285 |
| Experiment Type: |
transcription profiling by array |
| Study Type: |
WT vs. Mutant |
| Source: |
ArrayExpress |
|
•
•
•
•
•
|
| HT Experiment |
|
| Experiment Type: |
RNA-Seq |
| Study Type: |
WT vs. Mutant |
| Source: |
GEO |
|
•
•
•
•
•
|
| Genotype |
| Symbol: |
Gt(ROSA)26Sor/Gt(ROSA)26Sor<+> Tg(Lhx8-icre)1Kess/? |
| Background: |
involves: 129S6/SvEvTac * C57BL/6NCrl |
| Zygosity: |
cn |
| Has Mutant Allele: |
true |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Waldén TB |
| Year: |
2010 |
| Journal: |
Biochem Biophys Res Commun |
| Title: |
PPARalpha does not suppress muscle-associated gene expression in brown adipocytes but does influence expression of factors that fingerprint the brown adipocyte. |
| Volume: |
397 |
| Issue: |
2 |
| Pages: |
146-51 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Feng J |
| Year: |
2017 |
| Journal: |
Development |
| Title: |
BMP signaling orchestrates a transcriptional network to control the fate of mesenchymal stem cells in mice. |
| Volume: |
144 |
| Issue: |
14 |
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Front Cell Dev Biol |
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