Type |
Details |
Score |
Publication |
First Author: |
Uchida A |
Year: |
2022 |
Journal: |
Nat Commun |
Title: |
SOX17-positive rete testis epithelium is required for Sertoli valve formation and normal spermiogenesis in the male mouse. |
Volume: |
13 |
Issue: |
1 |
Pages: |
7860 |
|
•
•
•
•
•
|
Publication |
First Author: |
Santos R |
Year: |
2016 |
Journal: |
PLoS Biol |
Title: |
Conditional Creation and Rescue of Nipbl-Deficiency in Mice Reveals Multiple Determinants of Risk for Congenital Heart Defects. |
Volume: |
14 |
Issue: |
9 |
Pages: |
e2000197 |
|
•
•
•
•
•
|
Publication |
First Author: |
The Jackson Laboratory |
Year: |
2005 |
Journal: |
Unpublished |
Title: |
Information obtained from The Jackson Laboratory, Bar Harbor, ME |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Yoshikawa T |
Year: |
2006 |
Journal: |
Gene Expr Patterns |
Title: |
High-throughput screen for genes predominantly expressed in the ICM of mouse blastocysts by whole mount in situ hybridization. |
Volume: |
6 |
Issue: |
2 |
Pages: |
213-24 |
|
•
•
•
•
•
|
Publication |
First Author: |
Nishiyama A |
Year: |
2009 |
Journal: |
Cell Stem Cell |
Title: |
Uncovering early response of gene regulatory networks in ESCs by systematic induction of transcription factors. |
Volume: |
5 |
Issue: |
4 |
Pages: |
420-33 |
|
•
•
•
•
•
|
Publication |
First Author: |
Boroviak T |
Year: |
2014 |
Journal: |
Nat Cell Biol |
Title: |
The ability of inner-cell-mass cells to self-renew as embryonic stem cells is acquired following epiblast specification. |
Volume: |
16 |
Issue: |
6 |
Pages: |
516-28 |
|
•
•
•
•
•
|
Publication |
First Author: |
Telley L |
Year: |
2019 |
Journal: |
Science |
Title: |
Temporal patterning of apical progenitors and their daughter neurons in the developing neocortex. |
Volume: |
364 |
Issue: |
6440 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Lewandowski JP |
Year: |
2015 |
Journal: |
Dev Biol |
Title: |
Spatiotemporal regulation of GLI target genes in the mammalian limb bud. |
Volume: |
406 |
Issue: |
1 |
Pages: |
92-103 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shimizu H |
Year: |
2013 |
Journal: |
PLoS One |
Title: |
The AERO system: a 3D-like approach for recording gene expression patterns in the whole mouse embryo. |
Volume: |
8 |
Issue: |
10 |
Pages: |
e75754 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tang F |
Year: |
2011 |
Journal: |
PLoS One |
Title: |
Deterministic and stochastic allele specific gene expression in single mouse blastomeres. |
Volume: |
6 |
Issue: |
6 |
Pages: |
e21208 |
|
•
•
•
•
•
|
Publication |
First Author: |
Guo G |
Year: |
2010 |
Journal: |
Dev Cell |
Title: |
Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst. |
Volume: |
18 |
Issue: |
4 |
Pages: |
675-85 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2001 |
|
Title: |
RIKEN Data Curation in Mouse Genome Informatics |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Ko MS |
Year: |
2000 |
Journal: |
Development |
Title: |
Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. |
Volume: |
127 |
Issue: |
8 |
Pages: |
1737-49 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yokoyama S |
Year: |
2009 |
Journal: |
Dev Cell |
Title: |
A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. |
Volume: |
17 |
Issue: |
6 |
Pages: |
836-48 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hansen J |
Year: |
2003 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. |
Volume: |
100 |
Issue: |
17 |
Pages: |
9918-22 |
|
•
•
•
•
•
|
Publication |
First Author: |
Friedel RH |
Year: |
2007 |
Journal: |
Brief Funct Genomic Proteomic |
Title: |
EUCOMM--the European conditional mouse mutagenesis program. |
Volume: |
6 |
Issue: |
3 |
Pages: |
180-5 |
|
•
•
•
•
•
|
Publication |
First Author: |
Gray PA |
Year: |
2004 |
Journal: |
Science |
Title: |
Mouse brain organization revealed through direct genome-scale TF expression analysis. |
Volume: |
306 |
Issue: |
5705 |
Pages: |
2255-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations for FANTOM2 data |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Stryke D |
Year: |
2003 |
Journal: |
Nucleic Acids Res |
Title: |
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. |
Volume: |
31 |
Issue: |
1 |
Pages: |
278-81 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wellcome Trust Sanger Institute |
Year: |
2009 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the KOMP project by the Wellcome Trust Sanger Institute |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GUDMAP Consortium |
Year: |
2004 |
Journal: |
www.gudmap.org |
Title: |
GUDMAP: the GenitoUrinary Development Molecular Anatomy Project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Hansen GM |
Year: |
2008 |
Journal: |
Genome Res |
Title: |
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. |
Volume: |
18 |
Issue: |
10 |
Pages: |
1670-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Magdaleno S |
Year: |
2006 |
Journal: |
PLoS Biol |
Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
Volume: |
4 |
Issue: |
4 |
Pages: |
e86 |
|
•
•
•
•
•
|
Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kawai J |
Year: |
2001 |
Journal: |
Nature |
Title: |
Functional annotation of a full-length mouse cDNA collection. |
Volume: |
409 |
Issue: |
6821 |
Pages: |
685-90 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zambrowicz BP |
Year: |
2003 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. |
Volume: |
100 |
Issue: |
24 |
Pages: |
14109-14 |
|
•
•
•
•
•
|
Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
|
Title: |
GemPharmatech Website. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Skarnes WC |
Year: |
2011 |
Journal: |
Nature |
Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
Volume: |
474 |
Issue: |
7351 |
Pages: |
337-42 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI) |
Year: |
2008 |
Journal: |
Database Download |
Title: |
Mouse Gene Trap Data Load from dbGSS |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GOA curators |
Year: |
2016 |
|
Title: |
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara |
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|
|
|
•
•
•
•
•
|
Publication |
First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
Year: |
2004 |
Journal: |
Database Release |
Title: |
Mouse T31 Radiation Hybrid Data Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Okazaki Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
563-73 |
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Diez-Roux G |
Year: |
2011 |
Journal: |
PLoS Biol |
Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Volume: |
9 |
Issue: |
1 |
Pages: |
e1000582 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
|
Title: |
Annotation inferences using phylogenetic trees |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
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|
|
•
•
•
•
•
|
Strain |
Attribute String: |
mutant stock, targeted mutation |
|
•
•
•
•
•
|
Strain |
Attribute String: |
mutant stock, targeted mutation |
|
•
•
•
•
•
|
Allele |
Name: |
spalt like transcription factor 4; endonuclease-mediated mutation 1, Adrian Bird |
Allele Type: |
Endonuclease-mediated |
|
|
•
•
•
•
•
|
HT Experiment |
|
Experiment Type: |
RNA-Seq |
Study Type: |
WT vs. Mutant |
Source: |
GEO |
|
•
•
•
•
•
|
Publication |
First Author: |
Ueno S |
Year: |
2014 |
Journal: |
Exp Hematol |
Title: |
Aberrant expression of SALL4 in acute B cell lymphoblastic leukemia: mechanism, function, and implication for a potential novel therapeutic target. |
Volume: |
42 |
Issue: |
4 |
Pages: |
307-316.e8 |
|
•
•
•
•
•
|
Allele |
Name: |
spalt like transcription factor 4; targeted mutation 1, Ryuichi Nishinakamura |
Allele Type: |
Targeted |
Attribute String: |
Null/knockout |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
1067
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
623
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
278
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Sall4/Sall4<+> |
Background: |
involves: 129P2/OlaHsd * C57BL/6J |
Zygosity: |
ht |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Interaction Experiment |
Description: |
Sall4 interacts with Nanog and co-occupies Nanog genomic sites in embryonic stem cells. |
|
•
•
•
•
•
|
Interaction Experiment |
Description: |
Cooperative and antagonistic interactions between Sall4 and Tbx5 pattern the mouse limb and heart. |
|
•
•
•
•
•
|
Interaction Experiment |
Description: |
Stemness-related factor Sall4 interacts with transcription factors Oct-3/4 and Sox2 and occupies Oct-Sox elements in mouse embryonic stem cells. |
|
•
•
•
•
•
|
Allele |
Name: |
spalt like transcription factor 4; gene trap XE027, BayGenomics |
Allele Type: |
Gene trapped |
Attribute String: |
Reporter |
|
•
•
•
•
•
|
Allele |
Name: |
spalt like transcription factor 4; targeted mutation 1, Allan Bradley |
Allele Type: |
Targeted |
Attribute String: |
Null/knockout |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Sall4/Sall4<+> |
Background: |
involves: 129P2/OlaHsd * Black Swiss * C57BL/6 |
Zygosity: |
ht |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Sall4/Sall4<+> |
Background: |
B6;129P2-Sall4 |
Zygosity: |
ht |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
DO Term |
|
•
•
•
•
•
|
Allele |
Name: |
gene trap ROSA 26, Philippe Soriano; targeted mutation 1, Yasuhiko Kawakami |
Allele Type: |
Targeted |
Attribute String: |
Conditional ready, Epitope tag, Inserted expressed sequence, Reporter |
|
•
•
•
•
•
|
Publication |
First Author: |
Chen KQ |
Year: |
2022 |
Journal: |
PLoS One |
Title: |
Normal embryonic development and neonatal digit regeneration in mice overexpressing a stem cell factor, Sall4. |
Volume: |
17 |
Issue: |
4 |
Pages: |
e0267273 |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Sall4/Sall4<+> |
Background: |
involves: 129S7/SvEvBrd * C57BL/6J |
Zygosity: |
ht |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
DO Term |
|
•
•
•
•
•
|
Strain |
Attribute String: |
mutant strain, targeted mutation |
|
•
•
•
•
•
|
Strain |
Attribute String: |
congenic, mutant strain, targeted mutation |
|
•
•
•
•
•
|
Strain |
Attribute String: |
congenic, mutant strain, targeted mutation |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Sall4/Sall4<+> |
Background: |
B6(C3H)-Sall4 |
Zygosity: |
ht |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Strain |
Attribute String: |
mutant stock, targeted mutation |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Sall4/Sall4 |
Background: |
involves: 129P2/OlaHsd * C57BL/6J |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Wang B |
Year: |
2019 |
Journal: |
Cell Rep |
Title: |
Induction of Pluripotent Stem Cells from Mouse Embryonic Fibroblasts by Jdp2-Jhdm1b-Mkk6-Glis1-Nanog-Essrb-Sall4. |
Volume: |
27 |
Issue: |
12 |
Pages: |
3473-3485.e5 |
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
GSE70194 |
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
ArrayExpress |
|
•
•
•
•
•
|
Publication |
First Author: |
Maezawa S |
Year: |
2017 |
Journal: |
Genes Dev |
Title: |
Polycomb directs timely activation of germline genes in spermatogenesis. |
Volume: |
31 |
Issue: |
16 |
Pages: |
1693-1703 |
|
•
•
•
•
•
|
Publication |
First Author: |
Parchem RJ |
Year: |
2014 |
Journal: |
Cell Stem Cell |
Title: |
Two miRNA clusters reveal alternative paths in late-stage reprogramming. |
Volume: |
14 |
Issue: |
5 |
Pages: |
617-31 |
|
•
•
•
•
•
|
HT Experiment |
Series Id: |
E-GEOD-7775 |
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
GEO |
|
•
•
•
•
•
|
Publication |
First Author: |
Choi Y |
Year: |
2007 |
Journal: |
Biol Reprod |
Title: |
Microarray analyses of newborn mouse ovaries lacking Nobox. |
Volume: |
77 |
Issue: |
2 |
Pages: |
312-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ye J |
Year: |
2016 |
Journal: |
Cell Res |
Title: |
Pluripotent stem cells induced from mouse neural stem cells and small intestinal epithelial cells by small molecule compounds. |
Volume: |
26 |
Issue: |
1 |
Pages: |
34-45 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shu J |
Year: |
2015 |
Journal: |
Cell Res |
Title: |
GATA family members as inducers for cellular reprogramming to pluripotency. |
Volume: |
25 |
Issue: |
2 |
Pages: |
169-80 |
|
•
•
•
•
•
|
Publication |
First Author: |
Li A |
Year: |
2013 |
Journal: |
J Clin Invest |
Title: |
A SALL4/MLL/HOXA9 pathway in murine and human myeloid leukemogenesis. |
Volume: |
123 |
Issue: |
10 |
Pages: |
4195-207 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhang X |
Year: |
2015 |
Journal: |
Cancer Lett |
Title: |
SALL4: an emerging cancer biomarker and target. |
Volume: |
357 |
Issue: |
1 |
Pages: |
55-62 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lu W |
Year: |
2015 |
Journal: |
Stem Cells |
Title: |
Actl6a protects embryonic stem cells from differentiating into primitive endoderm. |
Volume: |
33 |
Issue: |
6 |
Pages: |
1782-93 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lin L |
Year: |
2018 |
Journal: |
J Biol Chem |
Title: |
The homeobox transcription factor MSX2 partially mediates the effects of bone morphogenetic protein 4 (BMP4) on somatic cell reprogramming. |
Volume: |
293 |
Issue: |
38 |
Pages: |
14905-14915 |
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Publication |
First Author: |
Mansour AA |
Year: |
2012 |
Journal: |
Nature |
Title: |
The H3K27 demethylase Utx regulates somatic and germ cell epigenetic reprogramming. |
Volume: |
488 |
Issue: |
7411 |
Pages: |
409-13 |
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Publication |
First Author: |
Gerhard DS |
Year: |
2004 |
Journal: |
Genome Res |
Title: |
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |
Volume: |
14 |
Issue: |
10B |
Pages: |
2121-7 |
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