| Type |
Details |
Score |
| Publication |
| First Author: |
Kalousova A |
| Year: |
2010 |
| Journal: |
Dev Biol |
| Title: |
Dachshund homologues play a conserved role in islet cell development. |
| Volume: |
348 |
| Issue: |
2 |
| Pages: |
143-52 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Zhang YH |
| Year: |
2021 |
| Journal: |
Cell Stem Cell |
| Title: |
Cascade diversification directs generation of neuronal diversity in the hypothalamus. |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mattiske T |
| Year: |
2016 |
| Journal: |
Hum Mol Genet |
| Title: |
Embryonic forebrain transcriptome of mice with polyalanine expansion mutations in the ARX homeobox gene. |
| Volume: |
25 |
| Issue: |
24 |
| Pages: |
5433-5443 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Dixit R |
| Year: |
2014 |
| Journal: |
Gene Expr Patterns |
| Title: |
Gene expression is dynamically regulated in retinal progenitor cells prior to and during overt cellular differentiation. |
| Volume: |
14 |
| Issue: |
1 |
| Pages: |
42-54 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Lavado A |
| Year: |
2008 |
| Journal: |
Development |
| Title: |
Six3 inactivation causes progressive caudalization and aberrant patterning of the mammalian diencephalon. |
| Volume: |
135 |
| Issue: |
3 |
| Pages: |
441-50 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Bando H |
| Year: |
2023 |
| Journal: |
Hum Mol Genet |
| Title: |
Heterozygous variants in SIX3 and POU1F1 cause pituitary hormone deficiency in mouse and man. |
| Volume: |
32 |
| Issue: |
3 |
| Pages: |
367-385 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ribes V |
| Year: |
2006 |
| Journal: |
Development |
| Title: |
Retinaldehyde dehydrogenase 2 (RALDH2)-mediated retinoic acid synthesis regulates early mouse embryonic forebrain development by controlling FGF and sonic hedgehog signaling. |
| Volume: |
133 |
| Issue: |
2 |
| Pages: |
351-61 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Hägglund AC |
| Year: |
2013 |
| Journal: |
PLoS One |
| Title: |
Canonical Wnt/β-catenin signalling is essential for optic cup formation. |
| Volume: |
8 |
| Issue: |
12 |
| Pages: |
e81158 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Sawai A |
| Year: |
2022 |
| Journal: |
Elife |
| Title: |
PRC1 sustains the integrity of neural fate in the absence of PRC2 function. |
| Volume: |
11 |
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Katoh K |
| Year: |
2012 |
| Journal: |
J Neurosci |
| Title: |
G9a histone methyltransferase activity in retinal progenitors is essential for proper differentiation and survival of mouse retinal cells. |
| Volume: |
32 |
| Issue: |
49 |
| Pages: |
17658-70 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Trowe MO |
| Year: |
2013 |
| Journal: |
Development |
| Title: |
Inhibition of Sox2-dependent activation of Shh in the ventral diencephalon by Tbx3 is required for formation of the neurohypophysis. |
| Volume: |
140 |
| Issue: |
11 |
| Pages: |
2299-309 |
|
•
•
•
•
•
|
| Gene |
| Type: |
gene |
| Organism: |
frog, African clawed |
|
•
•
•
•
•
|
| Gene |
| Type: |
gene |
| Organism: |
frog, African clawed |
|
•
•
•
•
•
|
| Publication |
| First Author: |
VanDunk C |
| Year: |
2011 |
| Journal: |
J Neurosci |
| Title: |
Development, maturation, and necessity of transcription factors in the mouse suprachiasmatic nucleus. |
| Volume: |
31 |
| Issue: |
17 |
| Pages: |
6457-67 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Tanahashi H |
| Year: |
2018 |
| Journal: |
Biochem Biophys Res Commun |
| Title: |
Deletion of Lrp4 increases the incidence of microphthalmia. |
| Volume: |
506 |
| Issue: |
3 |
| Pages: |
478-484 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Chung YC |
| Year: |
2011 |
| Journal: |
Gene Expr Patterns |
| Title: |
Screening large numbers of expression patterns of transcription factors in late stages of the mouse thymus. |
| Volume: |
11 |
| Issue: |
1-2 |
| Pages: |
84-92 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Wiese CB |
| Year: |
2012 |
| Journal: |
Front Neurosci |
| Title: |
A genome-wide screen to identify transcription factors expressed in pelvic Ganglia of the lower urinary tract. |
| Volume: |
6 |
|
| Pages: |
130 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Blackshaw S |
| Year: |
2004 |
| Journal: |
PLoS Biol |
| Title: |
Genomic analysis of mouse retinal development. |
| Volume: |
2 |
| Issue: |
9 |
| Pages: |
E247 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Yokoyama S |
| Year: |
2009 |
| Journal: |
Dev Cell |
| Title: |
A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. |
| Volume: |
17 |
| Issue: |
6 |
| Pages: |
836-48 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2001 |
|
| Title: |
Gene Ontology Annotation by the MGI Curatorial Staff |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
|
| Title: |
Mouse Synonym Curation |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Gray PA |
| Year: |
2004 |
| Journal: |
Science |
| Title: |
Mouse brain organization revealed through direct genome-scale TF expression analysis. |
| Volume: |
306 |
| Issue: |
5705 |
| Pages: |
2255-7 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Thompson CL |
| Year: |
2014 |
| Journal: |
Neuron |
| Title: |
A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. |
| Volume: |
83 |
| Issue: |
2 |
| Pages: |
309-323 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Velocigene |
| Year: |
2008 |
| Journal: |
MGI Direct Data Submission |
| Title: |
Alleles produced for the KOMP project by Velocigene (Regeneron Pharmaceuticals) |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
GUDMAP Consortium |
| Year: |
2004 |
| Journal: |
www.gudmap.org |
| Title: |
GUDMAP: the GenitoUrinary Development Molecular Anatomy Project |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
UniProt-GOA |
| Year: |
2012 |
|
| Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Magdaleno S |
| Year: |
2006 |
| Journal: |
PLoS Biol |
| Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
| Volume: |
4 |
| Issue: |
4 |
| Pages: |
e86 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
| Year: |
2004 |
| Journal: |
Database Release |
| Title: |
Mouse T31 Radiation Hybrid Data Load |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Okazaki Y |
| Year: |
2002 |
| Journal: |
Nature |
| Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
| Volume: |
420 |
| Issue: |
6915 |
| Pages: |
563-73 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
The Gene Ontology Consortium |
| Year: |
2010 |
|
| Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Diez-Roux G |
| Year: |
2011 |
| Journal: |
PLoS Biol |
| Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
| Volume: |
9 |
| Issue: |
1 |
| Pages: |
e1000582 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2002 |
|
| Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2010 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
MGI Genome Annotation Group and UniGene Staff |
| Year: |
2015 |
| Journal: |
Database Download |
| Title: |
MGI-UniGene Interconnection Effort |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
| Year: |
2010 |
|
| Title: |
Annotation inferences using phylogenetic trees |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
| Year: |
2000 |
| Journal: |
Database Release |
| Title: |
Entrez Gene Load |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Allen Institute for Brain Science |
| Year: |
2004 |
| Journal: |
Allen Institute |
| Title: |
Allen Brain Atlas: mouse riboprobes |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2009 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
| Year: |
2010 |
| Journal: |
Database Download |
| Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Group |
| Year: |
2003 |
| Journal: |
Database Procedure |
| Title: |
Automatic Encodes (AutoE) Reference |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Bairoch A |
| Year: |
1999 |
| Journal: |
Database Release |
| Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
|
| Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics |
| Year: |
2010 |
| Journal: |
Database Release |
| Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
|
| Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2009 |
| Journal: |
Database Download |
| Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ferrena A |
| Year: |
2023 |
| Journal: |
bioRxiv |
| Title: |
Six3 and Six6 jointly regulate the identities and developmental trajectories of multipotent retinal progenitor cells in the mouse retina. |
|
|
|
|
•
•
•
•
•
|
| HT Experiment |
|
| Experiment Type: |
RNA-Seq |
| Study Type: |
WT vs. Mutant |
| Source: |
GEO |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
203
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| DO Term |
|
•
•
•
•
•
|
| Allele |
| Name: |
transgene insertion IF290, GENSAT Project at Rockefeller University |
| Allele Type: |
Transgenic |
| Attribute String: |
Reporter |
|
•
•
•
•
•
|
| Allele |
| Name: |
transgene insertion TD40, GENSAT Project at Rockefeller University |
| Allele Type: |
Transgenic |
| Attribute String: |
Recombinase |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
mutant stock, transgenic |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
transgenic, mutant stock |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Slavotinek AM |
| Year: |
2011 |
| Journal: |
Mol Genet Metab |
| Title: |
Eye development genes and known syndromes. |
| Volume: |
104 |
| Issue: |
4 |
| Pages: |
448-56 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Lee EJ |
| Year: |
2019 |
| Journal: |
Cell Rep |
| Title: |
Global Analysis of Intercellular Homeodomain Protein Transfer. |
| Volume: |
28 |
| Issue: |
3 |
| Pages: |
712-722.e3 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ruf RG |
| Year: |
2004 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
SIX1 mutations cause branchio-oto-renal syndrome by disruption of EYA1-SIX1-DNA complexes. |
| Volume: |
101 |
| Issue: |
21 |
| Pages: |
8090-5 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Hoffmann HM |
| Year: |
2016 |
| Journal: |
J Neurosci |
| Title: |
Deletion of Vax1 from Gonadotropin-Releasing Hormone (GnRH) Neurons Abolishes GnRH Expression and Leads to Hypogonadism and Infertility. |
| Volume: |
36 |
| Issue: |
12 |
| Pages: |
3506-18 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Sanchez-Calderon H |
| Year: |
2010 |
| Journal: |
PLoS One |
| Title: |
RNA microarray analysis in prenatal mouse cochlea reveals novel IGF-I target genes: implication of MEF2 and FOXM1 transcription factors. |
| Volume: |
5 |
| Issue: |
1 |
| Pages: |
e8699 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Carninci P |
| Year: |
2005 |
| Journal: |
Science |
| Title: |
The transcriptional landscape of the mammalian genome. |
| Volume: |
309 |
| Issue: |
5740 |
| Pages: |
1559-63 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
The Gene Expression Nervous System Atlas (GENSAT) Project, The Rockefeller University (New York, NY) |
| Year: |
2005 |
| Journal: |
Database Download |
| Title: |
MGI download of GENSAT transgene data |
|
|
|
|
•
•
•
•
•
|