Type |
Details |
Score |
Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
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Title: |
GemPharmatech Website. |
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Publication |
First Author: |
Skarnes WC |
Year: |
2011 |
Journal: |
Nature |
Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
Volume: |
474 |
Issue: |
7351 |
Pages: |
337-42 |
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•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI) |
Year: |
2008 |
Journal: |
Database Download |
Title: |
Mouse Gene Trap Data Load from dbGSS |
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Publication |
First Author: |
Cyagen Biosciences Inc. |
Year: |
2022 |
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Title: |
Cyagen Biosciences Website. |
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Publication |
First Author: |
AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators |
Year: |
2011 |
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Title: |
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity |
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Publication |
First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
Year: |
2004 |
Journal: |
Database Release |
Title: |
Mouse T31 Radiation Hybrid Data Load |
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•
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Publication |
First Author: |
Okazaki Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
563-73 |
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•
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Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
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Publication |
First Author: |
Diez-Roux G |
Year: |
2011 |
Journal: |
PLoS Biol |
Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Volume: |
9 |
Issue: |
1 |
Pages: |
e1000582 |
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•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
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•
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Publication |
First Author: |
MGI Genome Annotation Group and UniGene Staff |
Year: |
2015 |
Journal: |
Database Download |
Title: |
MGI-UniGene Interconnection Effort |
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•
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Protein Coding Gene |
Type: |
protein_coding_gene |
Organism: |
mouse, laboratory |
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•
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Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
|
Title: |
Annotation inferences using phylogenetic trees |
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•
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•
•
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Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
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•
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Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
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•
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•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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•
•
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•
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
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•
•
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•
•
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Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
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Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
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•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
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•
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•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
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•
•
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•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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•
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•
|
GXD Expression |
Probe: |
MGI:6711096 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2021-05-17 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1783926 |
Pattern: |
Not Specified |
Stage: |
TS26 |
Assay Id: |
MGI:6711104 |
Age: |
embryonic day 18.5 |
|
Note: |
Expressed apically with respect to Cdh1 expression. |
Specimen Label: |
5A/A'/C/C' |
Detected: |
true |
Specimen Num: |
6 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3812108 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2024-10-02 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1607311 |
Pattern: |
Regionally restricted |
Stage: |
TS11 |
Assay Id: |
MGI:7734725 |
Age: |
embryonic day 7.5 |
|
Note: |
Significant basolateral colocalization with Cdh1 expression. |
Specimen Label: |
7f |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5635606 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2020-06-22 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3684028 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:6435773 |
Age: |
postnatal adult |
Image: |
4C |
Note: |
Co-expression with Cdh1 in cholangiocyte progenitors. |
Specimen Label: |
4C |
Detected: |
true |
Specimen Num: |
23 |
|
•
•
•
•
•
|
Pathway |
|
•
•
•
•
•
|
Interaction Experiment |
Description: |
The anaphase-promoting complex/cyclosome activator Cdh1 modulates Rho GTPase by targeting p190 RhoGAP for degradation. |
|
•
•
•
•
•
|
DO Term |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7333233 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2022-09-06 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1736321 |
Pattern: |
Regionally restricted |
Stage: |
TS21 |
Assay Id: |
MGI:7334715 |
Age: |
embryonic day 13.5 |
|
Note: |
Coexpressed with Cdh1 at the medial edge epithelium. |
Specimen Label: |
4Ci |
Detected: |
true |
Specimen Num: |
7 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:2681585 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2025-01-22 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3287326 |
Pattern: |
Regionally restricted |
Stage: |
TS26 |
Assay Id: |
MGI:7855376 |
Age: |
embryonic day 18.5 |
Image: |
4C/E Prkcz |
Note: |
Expression predominantly at apical membrane domain, co-localized with Cdh1 expression. |
Specimen Label: |
4C/E Prkcz |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
Allele |
Name: |
cadherin 1; endonuclease-mediated mutation 3, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Inducible, Recombinase |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3812108 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2024-10-02 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1607311 |
Pattern: |
Regionally restricted |
Stage: |
TS11 |
Assay Id: |
MGI:7734725 |
Age: |
embryonic day 7.5 |
|
Note: |
Apical expression in microvilli of neuroepithelium. Minimal overlap with Cdh1 expression. |
Specimen Label: |
7e |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6448440 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2020-08-06 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1607210 |
Pattern: |
Not Specified |
Stage: |
TS10 |
Assay Id: |
MGI:6448451 |
Age: |
embryonic day 7.5 |
|
Note: |
Cytosolic levels of Ctnnb1 rise after mesodermal cells downregulate Cdh1 and traverse the primitive streak. |
Specimen Label: |
2B |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6448440 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2020-08-06 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1607210 |
Pattern: |
Regionally restricted |
Stage: |
TS10 |
Assay Id: |
MGI:6448451 |
Age: |
embryonic day 7.5 |
|
Note: |
Ctnnb1 colocalized with Cdh1 at the cell membrane in the primitive streak of the mutant. |
Specimen Label: |
2E |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6866964 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2022-02-10 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:160403 |
Pattern: |
Regionally restricted |
Stage: |
TS03 |
Assay Id: |
MGI:6866990 |
Age: |
embryonic day 3.0 |
|
Note: |
Double staining revealed co-localization of Tjp2 and Cdh1 in the apicolateral junctional complex. |
Specimen Label: |
4A |
Detected: |
true |
Specimen Num: |
17 |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, mutant strain, endonuclease-mediated mutation |
|
•
•
•
•
•
|
Allele |
Name: |
cadherin 1; targeted mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Targeted |
Attribute String: |
Conditional ready, No functional change |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3839327 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2009-04-09 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:3148228 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:3839434 |
Age: |
postnatal week 10 |
Image: |
S5A,C |
Note: |
Expression was detected in type A single spermatogonia. Co-localization was seen with Cdh1 but not all Cdh1+ spermatogonia expressed Sohlh2. |
Specimen Label: |
S5A,C |
Detected: |
true |
Specimen Num: |
12 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3839327 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2009-04-09 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:3148228 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:3839434 |
Age: |
postnatal week 10 |
Image: |
S5D,F |
Note: |
Expression was detected in type A paired spermatogonia. Co-localization was seen with Cdh1 but not all Cdh1+ spermatogonia expressed Sohlh2. |
Specimen Label: |
S5D,F |
Detected: |
true |
Specimen Num: |
13 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3839327 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2009-04-09 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:3148228 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:3839434 |
Age: |
postnatal week 10 |
Image: |
S5G,I |
Note: |
Expression was detected in type A aligned spermatogonia. Co-localization was seen with Cdh1 but not all Cdh1+ spermatogonia expressed Sohlh2. |
Specimen Label: |
S5G,I |
Detected: |
true |
Specimen Num: |
14 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6324575 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2019-08-13 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3295228 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:6343210 |
Age: |
postnatal day 5 |
Image: |
3C |
Note: |
Expression was detected in the lumen of the ductal pancreatic epithelium, which was demarcated by Cdh1 staining. |
Specimen Label: |
3C |
Detected: |
true |
Specimen Num: |
5 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:2158661 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2005-07-06 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1750328 |
Pattern: |
Non-Uniform |
Stage: |
TS28 |
Assay Id: |
MGI:3580817 |
Age: |
postnatal adult |
Image: |
5J, 5L |
Note: |
Expression was detected in the cytoplasm. Expression did not colocalize with Cdh1 (E-Cadherin) in the islets of Langerhans. |
Specimen Label: |
5J, 5L |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:2158661 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2005-07-06 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1750328 |
Pattern: |
Non-Uniform |
Stage: |
TS28 |
Assay Id: |
MGI:3580824 |
Age: |
postnatal adult |
Image: |
5J, 5L |
Note: |
Expression was detected in the cytoplasm. Expression did not colocalize with Cdh1 (E-Cadherin) in the islets of Langerhans. |
Specimen Label: |
5J, 5L |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tran K |
Year: |
2008 |
Journal: |
J Virol |
Title: |
Accumulation of substrates of the anaphase-promoting complex (APC) during human cytomegalovirus infection is associated with the phosphorylation of Cdh1 and the dissociation and relocalization of APC subunits. |
Volume: |
82 |
Issue: |
1 |
Pages: |
529-37 |
|
•
•
•
•
•
|
Allele |
Name: |
cadherin 1; targeted mutation 3.1, Marc P Stemmler |
Allele Type: |
Targeted |
Attribute String: |
Inserted expressed sequence |
|
•
•
•
•
•
|
Allele |
Name: |
transgene insertion NIDA158, Nathaniel Heintz |
Allele Type: |
Transgenic |
Attribute String: |
Inducible, Recombinase |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3839327 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2009-04-09 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:3148228 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:3839434 |
Age: |
postnatal week 10 |
Image: |
S4I,K |
Note: |
Expression was detected in type A undifferentiated spermatogonia. Co-localization was seen with Cdh1, but some Cdh1 positive cells did not express Sohlh2. |
Specimen Label: |
S4I,K |
Detected: |
true |
Specimen Num: |
11 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3839327 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2009-04-09 |
Strength: |
Present |
Sex: |
Male |
Emaps: |
EMAPS:3148228 |
Pattern: |
Regionally restricted |
Stage: |
TS28 |
Assay Id: |
MGI:3839434 |
Age: |
postnatal week 10 |
Image: |
S5J,L |
Note: |
Expression was detected in type A aligned spermatogonia at the 16-cell stage. Co-localization was seen with Cdh1 but not all Cdh1+ spermatogonia expressed Sohlh2. |
Specimen Label: |
S5J,L |
Detected: |
true |
Specimen Num: |
15 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:6202368 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2018-10-16 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1607511 |
Pattern: |
Regionally restricted |
Stage: |
TS11 |
Assay Id: |
MGI:6202410 |
Age: |
embryonic day 7.5-7.75 |
|
Note: |
In ventral node pit cells, Pifo is localized apically to the adherens junction marker Cdh1 and at the base of the primary cilium in a ciliary necklace-like pattern. |
Specimen Label: |
4E ventral node pit cells 3 |
Detected: |
true |
Specimen Num: |
16 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5792660 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2025-01-07 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3595723 |
Pattern: |
Regionally restricted |
Stage: |
TS23 |
Assay Id: |
MGI:7798838 |
Age: |
embryonic day 15.0 |
|
Note: |
Coexpressed with Cdh1 in the developing epithelia consisting of future Harderian gland, superficial glands of the third membrane, and the flanking epithelia of the nascent nictitating membrane. |
Specimen Label: |
3L |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3580790 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2005-07-06 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1750328 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:3580818 |
Age: |
postnatal adult |
Image: |
5D, 5F |
Note: |
Expression was predominantly localized to the outer cell membrane in both the endocrine and exocrine compartment. Expression colocalized with Cdh1 (E-cadherin). |
Specimen Label: |
5D, 5F |
Detected: |
true |
Specimen Num: |
15 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3580788 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2005-07-06 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3292728 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:3580815 |
Age: |
postnatal adult |
Image: |
5A, 5C |
Note: |
Expression was detected in both the cytoplasm and the outer cell membrane of adult islets. Expression colocalized with Cdh1 (E-Cadherin) in the outer cell membrane. |
Specimen Label: |
5A, 5C |
Detected: |
true |
Specimen Num: |
14 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:3580786 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2005-07-06 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3292728 |
Pattern: |
Not Specified |
Stage: |
TS28 |
Assay Id: |
MGI:3580820 |
Age: |
postnatal adult |
Image: |
5G, 5I |
Note: |
Expression was detected in the cell cytoplasm but was not detectable in the outer cell membrane of the islets. Expression did not colocalize with Cdh1 (E-Cadherin). |
Specimen Label: |
5G, 5I |
Detected: |
true |
Specimen Num: |
14 |
|
•
•
•
•
•
|
Allele |
Name: |
transgene insertion AR201, GENSAT Project at Rockefeller University |
Allele Type: |
Transgenic |
Attribute String: |
Reporter |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, mutant strain, transgenic |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, mutant strain, targeted mutation |
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Genotype |
Symbol: |
Cdh1/Cdh1 |
Background: |
involves: C57BL/6 * FVB/N |
Zygosity: |
hm |
Has Mutant Allele: |
true |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
110
 |
Fragment?: |
false |
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Allele |
Name: |
cadherin 1; targeted mutation 1.1, Marc P Stemmler |
Allele Type: |
Targeted |
Attribute String: |
Hypomorph, Reporter |
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Strain |
Attribute String: |
mutant stock, transgenic |
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Strain |
Attribute String: |
congenic, mutant strain, targeted mutation |
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Genotype |
Symbol: |
Cdh1/Cdh1 |
Background: |
B6.129P2-Cdh1 |
Zygosity: |
hm |
Has Mutant Allele: |
true |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
164
 |
Fragment?: |
true |
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•
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Publication |
First Author: |
Qin S |
Year: |
2014 |
Journal: |
Nat Commun |
Title: |
Structural basis for histone mimicry and hijacking of host proteins by influenza virus protein NS1. |
Volume: |
5 |
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Pages: |
3952 |
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•
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Publication |
First Author: |
Jae Yoo E |
Year: |
2002 |
Journal: |
Biochem Biophys Res Commun |
Title: |
Hrp3, a chromodomain helicase/ATPase DNA binding protein, is required for heterochromatin silencing in fission yeast. |
Volume: |
295 |
Issue: |
4 |
Pages: |
970-4 |
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•
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Protein Domain |
Type: |
Domain |
Description: |
This domain can be found in chromodomain helicase DNA-binding protein 1 (Chd1) present in Saccharomyces cerevisiae. Cdh1 proteins have been associated with the efficient assembly and spacing of nucleosomes []. Chd1 consists of a double chromodomain, an Snf2-related ATPase domain and a C-terminal DNA binding domain [, ].This domain comprises the first four helices of the Chd1 DNA binding domain, which can be divided into regions SANT, HL1 and the β-linker. The HL1 region comprises of some 40 residues specific to budding yeast that are unlikely to form such a prominent feature or perform a conserved function in other species. Basic residues on the alpha-1 helix are thought to be important for DNA interaction [].This domain is also found in the Hrp3 protein, another member of the Cdh1 family in Schizosaccharomyces pombe. Like Cdh1, Hrp3 also comprises two chromo-domains, SNF2-like ATPase/7 helicase domains, and a C-terminal DNA binding domain []. |
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Protein Domain |
Type: |
Domain |
Description: |
CDH1 is an ATP-dependent chromatin-remodelling factor and plays an important role in regulating nucleosome assembly and mobilization. CHD1 consists of double chromodomain, SNF2-related ATPase domain, and a C-terminal DNA-binding domain. The DNA-binding domain contains SANT (Swi3, Ada2, N-CoR, TFIIIB) and SLIDE (SANT-like ISWI) domains in its C-terminal region []. SANT domains are structurally related to Myb-like domains are common motifs found in chromatin interacting proteins. Deletion of individual SANT or SLIDE domains in CDH1 does not significantly affect nucleosome binding, but combined deletion of both domains severely compromise binding, suggesting that the SANT-SLIDE motif recognizes DNA/nucleosomes as a single cooperative unit. SANT sequences of Chd1 proteins are the most distantly relation group of sequences relation to other SANT/Myb sequences, and are more diverse than other SANT proteins []. The SANT and SLIDE regions are well conserved in both Chd1 and ISWI (imitation switch) remodelling enzymes []. This domain comprises the SANT region and the helical linker region 1 (HL1). |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
493
 |
Fragment?: |
false |
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Publication |
First Author: |
Ryan DP |
Year: |
2011 |
Journal: |
EMBO J |
Title: |
The DNA-binding domain of the Chd1 chromatin-remodelling enzyme contains SANT and SLIDE domains. |
Volume: |
30 |
Issue: |
13 |
Pages: |
2596-609 |
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HT Experiment |
Series Id: |
E-GEOD-64303 |
Experiment Type: |
transcription profiling by array |
Study Type: |
WT vs. Mutant |
Source: |
GEO |
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Publication |
First Author: |
Firl A |
Year: |
2015 |
Journal: |
J Neurosci |
Title: |
Elucidating the role of AII amacrine cells in glutamatergic retinal waves. |
Volume: |
35 |
Issue: |
4 |
Pages: |
1675-86 |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
32
 |
Fragment?: |
false |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
129
 |
Fragment?: |
false |
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Publication |
First Author: |
Bassermann F |
Year: |
2014 |
Journal: |
Biochim Biophys Acta |
Title: |
The ubiquitin proteasome system - implications for cell cycle control and the targeted treatment of cancer. |
Volume: |
1843 |
Issue: |
1 |
Pages: |
150-62 |
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Publication |
First Author: |
Kops GJ |
Year: |
2010 |
Journal: |
J Cell Sci |
Title: |
APC16 is a conserved subunit of the anaphase-promoting complex/cyclosome. |
Volume: |
123 |
Issue: |
Pt 10 |
Pages: |
1623-33 |
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Protein Domain |
Type: |
Family |
Description: |
The anaphase promoting complex/cyclosome (APC/C) is a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C consists of thirteen different subunits and, in somatic cells, has two co-activators: Cdc20 and Cdh1 (also known as Fzr1), which associate with the APC/C core at defined stages of the cell cycle. APC/C is only active between metaphase and the end of the next G1 phase. During this time, APC/CCdc20 initiates anaphase and mitotic exit,while APC/CCdh1 contributes to mitotic exit and establishment of a stable G1 state []. This entry represents the APC/C subunit 16 []. |
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Publication |
First Author: |
Yudkovsky Y |
Year: |
2000 |
Journal: |
Biochem Biophys Res Commun |
Title: |
Phosphorylation of Cdc20/fizzy negatively regulates the mammalian cyclosome/APC in the mitotic checkpoint. |
Volume: |
271 |
Issue: |
2 |
Pages: |
299-304 |
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Publication |
First Author: |
Okaz E |
Year: |
2012 |
Journal: |
Cell |
Title: |
Meiotic prophase requires proteolysis of M phase regulators mediated by the meiosis-specific APC/CAma1. |
Volume: |
151 |
Issue: |
3 |
Pages: |
603-18 |
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Publication |
First Author: |
de Boer HR |
Year: |
2016 |
Journal: |
Cell Mol Life Sci |
Title: |
Controlling the response to DNA damage by the APC/C-Cdh1. |
Volume: |
73 |
Issue: |
5 |
Pages: |
949-60 |
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Publication |
First Author: |
Swan A |
Year: |
2007 |
Journal: |
Development |
Title: |
The Cdc20 (Fzy)/Cdh1-related protein, Cort, cooperates with Fzy in cyclin destruction and anaphase progression in meiosis I and II in Drosophila. |
Volume: |
134 |
Issue: |
5 |
Pages: |
891-9 |
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Publication |
First Author: |
Pesin JA |
Year: |
2007 |
Journal: |
PLoS Genet |
Title: |
Developmental role and regulation of cortex, a meiosis-specific anaphase-promoting complex/cyclosome activator. |
Volume: |
3 |
Issue: |
11 |
Pages: |
e202 |
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Protein Domain |
Type: |
Family |
Description: |
The anaphase promoting complex/cyclosome (APC/C) is a multisubunit ubiquitin ligase that targets mitotic regulators for degradation in exit from mitosis. At the end of mitosis, APC/C is activated by phosphorylation and association with the WD-40 protein Cdc20/Fizzy []. The inhibitory phosphorylation of Cdc20/Fizzy may have a role as a safeguard to keep the cyclosome inactive in early mitosis and under conditions of mitotic checkpoint arrest []. This entry includes Cdc20/Fizzy homologues from fungi, plants and animals.Three characterised budding yeasts homologues are included in this entry: Cdc20, Cdh1 and Ama1. Cdc20 and Cdh1 have been shown to activate APC/C during mitosis, while Ama1 is a meiosis-specific activator of the APC/C []. The APC/C-Cdh1 is also found involved in the cellular response to DNA damage []. Protein cortex from Drosophila melanogasterwhich is a female meiosis-specific activator of the anaphase promoting complex/cyclosome (APC/C) required for the completion of meiosis in oocytes, is also included in this entry. Cortex activates the ubiquitin ligase activity and substrate specificity of APC/C and triggers the sequential degradation of mitotic cyclins in meiosis [, ]. |
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Publication |
First Author: |
Keeley PW |
Year: |
2023 |
Journal: |
J Anat |
Title: |
Cell numbers, cell ratios, and developmental plasticity in the rod pathway of the mouse retina. |
Volume: |
243 |
Issue: |
2 |
Pages: |
204-222 |
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Publication |
First Author: |
Gamlin CR |
Year: |
2020 |
Journal: |
Curr Biol |
Title: |
Distinct Developmental Mechanisms Act Independently to Shape Biased Synaptic Divergence from an Inhibitory Neuron. |
Volume: |
30 |
Issue: |
7 |
Pages: |
1258-1268.e2 |
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Publication |
First Author: |
Schrock MS |
Year: |
2020 |
Journal: |
Semin Cancer Biol |
Title: |
APC/C ubiquitin ligase: Functions and mechanisms in tumorigenesis. |
Volume: |
67 |
Issue: |
Pt 2 |
Pages: |
80-91 |
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Publication |
First Author: |
Mohanty B |
Year: |
2016 |
Journal: |
J Mol Biol |
Title: |
The Chromatin Remodelling Protein CHD1 Contains a Previously Unrecognised C-Terminal Helical Domain. |
Volume: |
428 |
Issue: |
21 |
Pages: |
4298-4314 |
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Protein |
Organism: |
Mus musculus/domesticus |
Length: |
220
 |
Fragment?: |
true |
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Publication |
First Author: |
Delgado-Esteban M |
Year: |
2013 |
Journal: |
Nat Commun |
Title: |
APC/C-Cdh1 coordinates neurogenesis and cortical size during development. |
Volume: |
4 |
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Pages: |
2879 |
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Publication |
First Author: |
Valdez-Sinon AN |
Year: |
2020 |
Journal: |
iScience |
Title: |
Cdh1-APC Regulates Protein Synthesis and Stress Granules in Neurons through an FMRP-Dependent Mechanism. |
Volume: |
23 |
Issue: |
5 |
Pages: |
101132 |
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Publication |
First Author: |
Aibara D |
Year: |
2022 |
Journal: |
iScience |
Title: |
Gene repression through epigenetic modulation by PPARA enhances hepatocellular proliferation. |
Volume: |
25 |
Issue: |
5 |
Pages: |
104196 |
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Publication |
First Author: |
Gao D |
Year: |
2009 |
Journal: |
Nat Cell Biol |
Title: |
Phosphorylation by Akt1 promotes cytoplasmic localization of Skp2 and impairs APCCdh1-mediated Skp2 destruction. |
Volume: |
11 |
Issue: |
4 |
Pages: |
397-408 |
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Publication |
First Author: |
Wirth KG |
Year: |
2004 |
Journal: |
Genes Dev |
Title: |
Loss of the anaphase-promoting complex in quiescent cells causes unscheduled hepatocyte proliferation. |
Volume: |
18 |
Issue: |
1 |
Pages: |
88-98 |
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Publication |
First Author: |
GarcÃa-Higuera I |
Year: |
2008 |
Journal: |
Nat Cell Biol |
Title: |
Genomic stability and tumour suppression by the APC/C cofactor Cdh1. |
Volume: |
10 |
Issue: |
7 |
Pages: |
802-11 |
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Publication |
First Author: |
Rattani A |
Year: |
2017 |
Journal: |
Curr Biol |
Title: |
APC/CCdh1 Enables Removal of Shugoshin-2 from the Arms of Bivalent Chromosomes by Moderating Cyclin-Dependent Kinase Activity. |
Volume: |
27 |
Issue: |
10 |
Pages: |
1462-1476.e5 |
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Publication |
First Author: |
Bobo-Jiménez V |
Year: |
2017 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
APC/CCdh1-Rock2 pathway controls dendritic integrity and memory. |
Volume: |
114 |
Issue: |
17 |
Pages: |
4513-4518 |
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Publication |
First Author: |
Chen Z |
Year: |
2020 |
Journal: |
Cell Death Dis |
Title: |
A Cdh1-FoxM1-Apc axis controls muscle development and regeneration. |
Volume: |
11 |
Issue: |
3 |
Pages: |
180 |
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Publication |
First Author: |
Lee SB |
Year: |
2015 |
Journal: |
Mol Cell |
Title: |
Parkin Regulates Mitosis and Genomic Stability through Cdc20/Cdh1. |
Volume: |
60 |
Issue: |
1 |
Pages: |
21-34 |
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Publication |
First Author: |
Huang J |
Year: |
2015 |
Journal: |
Neuron |
Title: |
A Cdh1-APC/FMRP Ubiquitin Signaling Link Drives mGluR-Dependent Synaptic Plasticity in the Mammalian Brain. |
Volume: |
86 |
Issue: |
3 |
Pages: |
726-39 |
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