Type |
Details |
Score |
Publication |
First Author: |
Min KW |
Year: |
2023 |
Journal: |
Exp Mol Med |
Title: |
Visuomotor anomalies in achiasmatic mice expressing a transfer-defective Vax1 mutant. |
Volume: |
55 |
Issue: |
2 |
Pages: |
385-400 |
|
•
•
•
•
•
|
Publication |
First Author: |
Maheshwari U |
Year: |
2020 |
Journal: |
Cell Rep |
Title: |
Postmitotic Hoxa5 Expression Specifies Pontine Neuron Positional Identity and Input Connectivity of Cortical Afferent Subsets. |
Volume: |
31 |
Issue: |
11 |
Pages: |
107767 |
|
•
•
•
•
•
|
Publication |
First Author: |
Leone DP |
Year: |
2017 |
Journal: |
Cereb Cortex |
Title: |
Compensatory Actions of Ldb Adaptor Proteins During Corticospinal Motor Neuron Differentiation. |
Volume: |
27 |
Issue: |
2 |
Pages: |
1686-1699 |
|
•
•
•
•
•
|
Publication |
First Author: |
Choe Y |
Year: |
2012 |
Journal: |
Neuron |
Title: |
A cascade of morphogenic signaling initiated by the meninges controls corpus callosum formation. |
Volume: |
73 |
Issue: |
4 |
Pages: |
698-712 |
|
•
•
•
•
•
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Publication |
First Author: |
Zirzow S |
Year: |
2009 |
Journal: |
Dev Biol |
Title: |
Expression and requirement of T-box transcription factors Tbx2 and Tbx3 during secondary palate development in the mouse. |
Volume: |
336 |
Issue: |
2 |
Pages: |
145-55 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yan K |
Year: |
2023 |
Journal: |
Cereb Cortex |
Title: |
TrkB-dependent EphrinA reverse signaling regulates callosal axon fasciculate growth downstream of Neurod2/6. |
Volume: |
33 |
Issue: |
5 |
Pages: |
1752-1767 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wilkerson BA |
Year: |
2021 |
Journal: |
Elife |
Title: |
Novel cell types and developmental lineages revealed by single-cell RNA-seq analysis of the mouse crista ampullaris. |
Volume: |
10 |
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|
•
•
•
•
•
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Publication |
First Author: |
Saulnier A |
Year: |
2013 |
Journal: |
Cereb Cortex |
Title: |
The doublesex homolog Dmrt5 is required for the development of the caudomedial cerebral cortex in mammals. |
Volume: |
23 |
Issue: |
11 |
Pages: |
2552-67 |
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•
•
•
•
•
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Publication |
First Author: |
Soleilhavoup C |
Year: |
2020 |
Journal: |
Nat Commun |
Title: |
Nolz1 expression is required in dopaminergic axon guidance and striatal innervation. |
Volume: |
11 |
Issue: |
1 |
Pages: |
3111 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bibollet-Bahena O |
Year: |
2017 |
Journal: |
PLoS One |
Title: |
A dual-strategy expression screen for candidate connectivity labels in the developing thalamus. |
Volume: |
12 |
Issue: |
5 |
Pages: |
e0177977 |
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•
•
•
•
•
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Publication |
First Author: |
Telley L |
Year: |
2019 |
Journal: |
Science |
Title: |
Temporal patterning of apical progenitors and their daughter neurons in the developing neocortex. |
Volume: |
364 |
Issue: |
6440 |
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•
•
•
•
•
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Publication |
First Author: |
Robinson DR |
Year: |
2000 |
Journal: |
Oncogene |
Title: |
The protein tyrosine kinase family of the human genome. |
Volume: |
19 |
Issue: |
49 |
Pages: |
5548-57 |
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•
•
•
•
•
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Publication |
First Author: |
Copeland NG |
Year: |
1999 |
Journal: |
Database Release |
Title: |
Copeland-Jenkins (Frederick) Interspecific Backcross Mapping Data |
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•
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Publication |
First Author: |
Centre for Modeling Human Disease |
Year: |
2010 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the NorCOMM project by the Centre for Modeling Human Disease (Cmhd), Institute of Biomaterials & Biomedical Engineering, University of Toronto |
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•
•
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•
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Publication |
First Author: |
GOA curators, MGI curators |
Year: |
2001 |
|
Title: |
Gene Ontology annotation based on Enzyme Commission mapping |
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•
•
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•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Mouse Synonym Curation |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2003 |
|
Title: |
Data Curation Using Mouse Genome Assembly |
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•
•
•
•
•
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Publication |
First Author: |
MGI and IMPC |
Year: |
2018 |
Journal: |
Database Release |
Title: |
MGI Load of Endonuclease-Mediated Alleles (CRISPR) from the International Mouse Phenotyping Consortium (IMPC) |
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•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2016 |
|
Title: |
Automatic assignment of GO terms using logical inference, based on on inter-ontology links |
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Publication |
First Author: |
Thompson CL |
Year: |
2014 |
Journal: |
Neuron |
Title: |
A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. |
Volume: |
83 |
Issue: |
2 |
Pages: |
309-323 |
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Publication |
First Author: |
Visel A |
Year: |
2004 |
Journal: |
Nucleic Acids Res |
Title: |
GenePaint.org: an atlas of gene expression patterns in the mouse embryo. |
Volume: |
32 |
Issue: |
Database issue |
Pages: |
D552-6 |
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Publication |
First Author: |
Bedogni F |
Year: |
2021 |
Journal: |
Front Mol Neurosci |
Title: |
Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. |
Volume: |
14 |
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Pages: |
686034 |
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Publication |
First Author: |
Lennon G |
Year: |
1999 |
Journal: |
Database Download |
Title: |
WashU-HHMI Mouse EST Project |
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•
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Publication |
First Author: |
Wellcome Trust Sanger Institute |
Year: |
2010 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the EUCOMM and EUCOMMTools projects by the Wellcome Trust Sanger Institute |
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•
•
•
•
•
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Publication |
First Author: |
GUDMAP Consortium |
Year: |
2004 |
Journal: |
www.gudmap.org |
Title: |
GUDMAP: the GenitoUrinary Development Molecular Anatomy Project |
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•
•
•
•
•
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Publication |
First Author: |
Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC) |
Year: |
2014 |
Journal: |
Database Release |
Title: |
Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database |
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•
•
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•
•
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Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2014 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-rat orthologs |
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•
•
•
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•
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Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt |
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•
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Publication |
First Author: |
Magdaleno S |
Year: |
2006 |
Journal: |
PLoS Biol |
Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
Volume: |
4 |
Issue: |
4 |
Pages: |
e86 |
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•
•
•
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•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2003 |
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Title: |
MGI Sequence Curation Reference |
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•
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Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
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Publication |
First Author: |
Adams DJ |
Year: |
2024 |
Journal: |
Nature |
Title: |
Genetic determinants of micronucleus formation in vivo. |
Volume: |
627 |
Issue: |
8002 |
Pages: |
130-136 |
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Publication |
First Author: |
MGD Nomenclature Committee |
Year: |
1995 |
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Title: |
Nomenclature Committee Use |
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Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
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Title: |
GemPharmatech Website. |
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Publication |
First Author: |
Skarnes WC |
Year: |
2011 |
Journal: |
Nature |
Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
Volume: |
474 |
Issue: |
7351 |
Pages: |
337-42 |
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•
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI) |
Year: |
2008 |
Journal: |
Database Download |
Title: |
Mouse Gene Trap Data Load from dbGSS |
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Publication |
First Author: |
Cyagen Biosciences Inc. |
Year: |
2022 |
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Title: |
Cyagen Biosciences Website. |
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Publication |
First Author: |
AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators |
Year: |
2011 |
|
Title: |
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity |
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Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
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Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping |
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Publication |
First Author: |
GOA curators |
Year: |
2016 |
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Title: |
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara |
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Publication |
First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
Year: |
2004 |
Journal: |
Database Release |
Title: |
Mouse T31 Radiation Hybrid Data Load |
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Publication |
First Author: |
Okazaki Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
Volume: |
420 |
Issue: |
6915 |
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563-73 |
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Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
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Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
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Publication |
First Author: |
Diez-Roux G |
Year: |
2011 |
Journal: |
PLoS Biol |
Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Volume: |
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Issue: |
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e1000582 |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
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Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
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•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
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Publication |
First Author: |
MGI Genome Annotation Group and UniGene Staff |
Year: |
2015 |
Journal: |
Database Download |
Title: |
MGI-UniGene Interconnection Effort |
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Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
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Title: |
Annotation inferences using phylogenetic trees |
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Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
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Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
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Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
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Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
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Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
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•
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Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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Publication |
First Author: |
Dong Y |
Year: |
2011 |
Journal: |
Neurosci Lett |
Title: |
Involvement of EphB1 receptor/ephrinB1 ligand in bone cancer pain. |
Volume: |
496 |
Issue: |
3 |
Pages: |
163-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wang JD |
Year: |
2007 |
Journal: |
Oncology |
Title: |
Loss of expression of EphB1 protein in gastric carcinoma associated with invasion and metastasis. |
Volume: |
73 |
Issue: |
3-4 |
Pages: |
238-45 |
|
•
•
•
•
•
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Publication |
First Author: |
Han DC |
Year: |
2002 |
Journal: |
J Biol Chem |
Title: |
EphB1 associates with Grb7 and regulates cell migration. |
Volume: |
277 |
Issue: |
47 |
Pages: |
45655-61 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:7711667 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2024-08-23 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:1691620 |
Pattern: |
Regionally restricted |
Stage: |
TS20 |
Assay Id: |
MGI:7711696 |
Age: |
embryonic day 12.5 |
|
Note: |
Expression in small number of cells in same region as Ephb1 was expressed. |
Specimen Label: |
3C |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5696828 |
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2018-04-16 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3514423 |
Pattern: |
Regionally restricted |
Stage: |
TS23 |
Assay Id: |
MGI:6150924 |
Age: |
embryonic day 15.5 |
Image: |
3C |
Note: |
Expressed in the arterial endothelial cells. No significant expression of Ephb1 in the lacZ-positive arterial vasculature. |
Specimen Label: |
3C |
Detected: |
true |
Specimen Num: |
3 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:5696828 |
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2018-04-16 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3514423 |
Pattern: |
Regionally restricted |
Stage: |
TS23 |
Assay Id: |
MGI:6150924 |
Age: |
embryonic day 15.5 |
Image: |
3K |
Note: |
Expressed in the arterial endothelial cells. No significant expression of Ephb1 in the lacZ-positive arterial vasculature. |
Specimen Label: |
3K |
Detected: |
true |
Specimen Num: |
6 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
984
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
This entry represents the ligand-binding domain found in ephrin type-B receptor 1 (EphB1). Using EphB1 knockout-mice, EphB1 has been shown to be essential to the development of long-term potentiation (LTP) [], a cellular model of synaptic plasticity, learning and memory formation [, , ].Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands [].Ephrin receptors (EphRs) comprise thelargest subfamily of receptor tyrosine kinases (RTKs). EphRs contain a ligand binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyrosine kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling) []. |
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•
•
•
•
•
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Publication |
First Author: |
Morenilla-Palao C |
Year: |
2020 |
Journal: |
Sci Adv |
Title: |
A Zic2-regulated switch in a noncanonical Wnt/βcatenin pathway is essential for the formation of bilateral circuits. |
Volume: |
6 |
Issue: |
46 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Pickles JO |
Year: |
2002 |
Journal: |
J Comp Neurol |
Title: |
Complementary and layered expression of Ephs and ephrins in developing mouse inner ear. |
Volume: |
449 |
Issue: |
3 |
Pages: |
207-16 |
|
•
•
•
•
•
|
Publication |
First Author: |
Anselmo A |
Year: |
2016 |
Journal: |
Cell Death Differ |
Title: |
Identification of a novel agrin-dependent pathway in cell signaling and adhesion within the erythroid niche. |
Volume: |
23 |
Issue: |
8 |
Pages: |
1322-30 |
|
•
•
•
•
•
|
Publication |
First Author: |
Arthur A |
Year: |
2019 |
Journal: |
Exp Hematol |
Title: |
Loss of EfnB1 in the osteogenic lineage compromises their capacity to support hematopoietic stem/progenitor cell maintenance. |
Volume: |
69 |
|
Pages: |
43-53 |
|
•
•
•
•
•
|
Publication |
First Author: |
Calò L |
Year: |
2005 |
Journal: |
J Neurosci |
Title: |
Interactions between ephrin-B and metabotropic glutamate 1 receptors in brain tissue and cultured neurons. |
Volume: |
25 |
Issue: |
9 |
Pages: |
2245-54 |
|
•
•
•
•
•
|
Publication |
First Author: |
Liu WT |
Year: |
2009 |
Journal: |
FASEB J |
Title: |
EphB receptor signaling in mouse spinal cord contributes to physical dependence on morphine. |
Volume: |
23 |
Issue: |
1 |
Pages: |
90-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Glendining KA |
Year: |
2017 |
Journal: |
BMC Neurosci |
Title: |
Downstream mediators of Ten-m3 signalling in the developing visual pathway. |
Volume: |
18 |
Issue: |
1 |
Pages: |
78 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
456
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Himanen JP |
Year: |
2003 |
Journal: |
Trends Neurosci |
Title: |
Eph signaling: a structural view. |
Volume: |
26 |
Issue: |
1 |
Pages: |
46-51 |
|
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•
•
•
•
|