Type |
Details |
Score |
Publication |
First Author: |
Ishibashi M |
Year: |
1995 |
Journal: |
Genes Dev |
Title: |
Targeted disruption of mammalian hairy and Enhancer of split homolog-1 (HES-1) leads to up-regulation of neural helix-loop-helix factors, premature neurogenesis, and severe neural tube defects. |
Volume: |
9 |
Issue: |
24 |
Pages: |
3136-48 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mattar P |
Year: |
2008 |
Journal: |
Mol Cell Biol |
Title: |
Basic helix-loop-helix transcription factors cooperate to specify a cortical projection neuron identity. |
Volume: |
28 |
Issue: |
5 |
Pages: |
1456-69 |
|
•
•
•
•
•
|
Publication |
First Author: |
Żak M |
Year: |
2016 |
Journal: |
Front Cell Neurosci |
Title: |
LGR4 and LGR5 Regulate Hair Cell Differentiation in the Sensory Epithelium of the Developing Mouse Cochlea. |
Volume: |
10 |
|
Pages: |
186 |
|
•
•
•
•
•
|
Publication |
First Author: |
Filova I |
Year: |
2020 |
Journal: |
Mol Neurobiol |
Title: |
Combined Atoh1 and Neurod1 Deletion Reveals Autonomous Growth of Auditory Nerve Fibers. |
Volume: |
57 |
Issue: |
12 |
Pages: |
5307-5323 |
|
•
•
•
•
•
|
Publication |
First Author: |
Jahan I |
Year: |
2012 |
Journal: |
PLoS One |
Title: |
Expression of Neurog1 instead of Atoh1 can partially rescue organ of Corti cell survival. |
Volume: |
7 |
Issue: |
1 |
Pages: |
e30853 |
|
•
•
•
•
•
|
Publication |
First Author: |
Duncan JS |
Year: |
2013 |
Journal: |
PLoS One |
Title: |
Continued expression of GATA3 is necessary for cochlear neurosensory development. |
Volume: |
8 |
Issue: |
4 |
Pages: |
e62046 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bedogni F |
Year: |
2010 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
Tbr1 regulates regional and laminar identity of postmitotic neurons in developing neocortex. |
Volume: |
107 |
Issue: |
29 |
Pages: |
13129-34 |
|
•
•
•
•
•
|
Publication |
First Author: |
Makrides N |
Year: |
2018 |
Journal: |
Front Mol Neurosci |
Title: |
Sequential Role of SOXB2 Factors in GABAergic Neuron Specification of the Dorsal Midbrain. |
Volume: |
11 |
|
Pages: |
152 |
|
•
•
•
•
•
|
Publication |
First Author: |
Dixit R |
Year: |
2014 |
Journal: |
Gene Expr Patterns |
Title: |
Gene expression is dynamically regulated in retinal progenitor cells prior to and during overt cellular differentiation. |
Volume: |
14 |
Issue: |
1 |
Pages: |
42-54 |
|
•
•
•
•
•
|
Publication |
First Author: |
Eddleston J |
Year: |
1999 |
Journal: |
Genomics |
Title: |
Physical and transcriptional map of a 3-Mb region of mouse chromosome 1 containing the gene for the neural tube defect mutant loop-tail (Lp). |
Volume: |
56 |
Issue: |
2 |
Pages: |
149-59 |
|
•
•
•
•
•
|
Publication |
First Author: |
Butts JC |
Year: |
2024 |
Journal: |
Dev Cell |
Title: |
A single-cell transcriptomic map of the developing Atoh1 lineage identifies neural fate decisions and neuronal diversity in the hindbrain. |
Volume: |
59 |
Issue: |
16 |
Pages: |
2171-2188.e7 |
|
•
•
•
•
•
|
Publication |
First Author: |
El-Saafin F |
Year: |
2022 |
Journal: |
Cell Death Differ |
Title: |
Loss of TAF8 causes TFIID dysfunction and p53-mediated apoptotic neuronal cell death. |
Volume: |
29 |
Issue: |
5 |
Pages: |
1013-1027 |
|
•
•
•
•
•
|
Publication |
First Author: |
Gibson P |
Year: |
2010 |
Journal: |
Nature |
Title: |
Subtypes of medulloblastoma have distinct developmental origins. |
Volume: |
468 |
Issue: |
7327 |
Pages: |
1095-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ulmke PA |
Year: |
2021 |
Journal: |
Stem Cell Reports |
Title: |
Molecular Profiling Reveals Involvement of ESCO2 in Intermediate Progenitor Cell Maintenance in the Developing Mouse Cortex. |
Volume: |
16 |
Issue: |
4 |
Pages: |
968-984 |
|
•
•
•
•
•
|
Publication |
First Author: |
Osipovich AB |
Year: |
2014 |
Journal: |
Development |
Title: |
Insm1 promotes endocrine cell differentiation by modulating the expression of a network of genes that includes Neurog3 and Ripply3. |
Volume: |
141 |
Issue: |
15 |
Pages: |
2939-49 |
|
•
•
•
•
•
|
Publication |
First Author: |
Machold R |
Year: |
2011 |
Journal: |
Gene Expr Patterns |
Title: |
Genes expressed in Atoh1 neuronal lineages arising from the r1/isthmus rhombic lip. |
Volume: |
11 |
Issue: |
5-6 |
Pages: |
349-59 |
|
•
•
•
•
•
|
Publication |
First Author: |
Stevens JD |
Year: |
2008 |
Journal: |
Differentiation |
Title: |
Phylogenetic and expression analysis of the basic helix-loop-helix transcription factor gene family: genomic approach to cellular differentiation. |
Volume: |
76 |
Issue: |
9 |
Pages: |
1006-22 |
|
•
•
•
•
•
|
Publication |
First Author: |
Loo L |
Year: |
2019 |
Journal: |
Nat Commun |
Title: |
Single-cell transcriptomic analysis of mouse neocortical development. |
Volume: |
10 |
Issue: |
1 |
Pages: |
134 |
|
•
•
•
•
•
|
Publication |
First Author: |
Oeschger FM |
Year: |
2012 |
Journal: |
Cereb Cortex |
Title: |
Gene expression analysis of the embryonic subplate. |
Volume: |
22 |
Issue: |
6 |
Pages: |
1343-59 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shanghai Model Organisms Center |
Year: |
2017 |
Journal: |
MGI Direct Data Submission |
Title: |
Information obtained from the Shanghai Model Organisms Center (SMOC), Shanghai, China |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Willnow T |
Year: |
2005 |
Journal: |
Organogenesis |
Title: |
The European renal genome project: an integrated approach towards understanding the genetics of kidney development and disease. |
Volume: |
2 |
Issue: |
2 |
Pages: |
42-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Blackshaw S |
Year: |
2004 |
Journal: |
PLoS Biol |
Title: |
Genomic analysis of mouse retinal development. |
Volume: |
2 |
Issue: |
9 |
Pages: |
E247 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Mouse Synonym Curation |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Gray PA |
Year: |
2004 |
Journal: |
Science |
Title: |
Mouse brain organization revealed through direct genome-scale TF expression analysis. |
Volume: |
306 |
Issue: |
5705 |
Pages: |
2255-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Thompson CL |
Year: |
2014 |
Journal: |
Neuron |
Title: |
A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. |
Volume: |
83 |
Issue: |
2 |
Pages: |
309-323 |
|
•
•
•
•
•
|
Publication |
First Author: |
Bedogni F |
Year: |
2021 |
Journal: |
Front Mol Neurosci |
Title: |
Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. |
Volume: |
14 |
|
Pages: |
686034 |
|
•
•
•
•
•
|
Publication |
First Author: |
International Knockout Mouse Consortium |
Year: |
2014 |
Journal: |
Database Download |
Title: |
MGI download of modified allele data from IKMC and creation of new knockout alleles |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
International Mouse Strain Resource |
Year: |
2014 |
Journal: |
Database Download |
Title: |
MGI download of germline transmission data for alleles from IMSR strain data |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Wellcome Trust Sanger Institute |
Year: |
2009 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the KOMP project by the Wellcome Trust Sanger Institute |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GUDMAP Consortium |
Year: |
2004 |
Journal: |
www.gudmap.org |
Title: |
GUDMAP: the GenitoUrinary Development Molecular Anatomy Project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC) |
Year: |
2014 |
Journal: |
Database Release |
Title: |
Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
DDB, FB, MGI, GOA, ZFIN curators |
Year: |
2001 |
|
Title: |
Gene Ontology annotation through association of InterPro records with GO terms |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Magdaleno S |
Year: |
2006 |
Journal: |
PLoS Biol |
Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
Volume: |
4 |
Issue: |
4 |
Pages: |
e86 |
|
•
•
•
•
•
|
Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
Adams DJ |
Year: |
2024 |
Journal: |
Nature |
Title: |
Genetic determinants of micronucleus formation in vivo. |
Volume: |
627 |
Issue: |
8002 |
Pages: |
130-136 |
|
•
•
•
•
•
|
Publication |
First Author: |
MGD Nomenclature Committee |
Year: |
1995 |
|
Title: |
Nomenclature Committee Use |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
|
Title: |
GemPharmatech Website. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Skarnes WC |
Year: |
2011 |
Journal: |
Nature |
Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
Volume: |
474 |
Issue: |
7351 |
Pages: |
337-42 |
|
•
•
•
•
•
|
Publication |
First Author: |
Cyagen Biosciences Inc. |
Year: |
2022 |
|
Title: |
Cyagen Biosciences Website. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GOA curators |
Year: |
2016 |
|
Title: |
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Diez-Roux G |
Year: |
2011 |
Journal: |
PLoS Biol |
Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Volume: |
9 |
Issue: |
1 |
Pages: |
e1000582 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
MGI Genome Annotation Group and UniGene Staff |
Year: |
2015 |
Journal: |
Database Download |
Title: |
MGI-UniGene Interconnection Effort |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
|
Title: |
Annotation inferences using phylogenetic trees |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
|
|
|
•
•
•
•
•
|
Allele |
Name: |
nescient helix loop helix 1; endonuclease-mediated mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Null/knockout |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:2148090 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2020-09-02 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1616417 |
Pattern: |
Regionally restricted |
Stage: |
TS17 |
Assay Id: |
MGI:6452589 |
Age: |
embryonic day 10.5 |
|
Note: |
Strong expression in ventrolateral region of neural tube. Expression also in region of dorsal neural tube, marking subpopularion of dorsal sensory interneurons. Expression in a few cells more medially, within Nhlh1 expression domain, likely to represent motor neurons. |
Specimen Label: |
4F |
Detected: |
true |
Specimen Num: |
1 |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:2148090 |
Assay Type: |
Immunohistochemistry |
Annotation Date: |
2020-09-02 |
Strength: |
Strong |
Sex: |
Not Specified |
Emaps: |
EMAPS:1616417 |
Pattern: |
Regionally restricted |
Stage: |
TS17 |
Assay Id: |
MGI:6452589 |
Age: |
embryonic day 10.5 |
|
Note: |
Strong expression in ventrolateral region of neural tube. Expression also in region of dorsal neural tube, marking subpopularion of dorsal sensory interneurons. Expression in a few cells more medially, within Nhlh1 expression domain, likely to represent motor neurons. |
Specimen Label: |
4G |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
Publication |
First Author: |
Xia Y |
Year: |
1991 |
Journal: |
Proc Natl Acad Sci U S A |
Title: |
TAL2, a helix-loop-helix gene activated by the (7;9)(q34;q32) translocation in human T-cell leukemia. |
Volume: |
88 |
Issue: |
24 |
Pages: |
11416-20 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
146
 |
Fragment?: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Aplan PD |
Year: |
1992 |
Journal: |
EMBO J |
Title: |
The SCL gene product: a positive regulator of erythroid differentiation. |
Volume: |
11 |
Issue: |
11 |
Pages: |
4073-81 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mellentin JD |
Year: |
1989 |
Journal: |
Cell |
Title: |
lyl-1, a novel gene altered by chromosomal translocation in T cell leukemia, codes for a protein with a helix-loop-helix DNA binding motif. |
Volume: |
58 |
Issue: |
1 |
Pages: |
77-83 |
|
•
•
•
•
•
|
Publication |
First Author: |
Chiu SK |
Year: |
2018 |
Journal: |
Development |
Title: |
A novel role for Lyl1 in primitive erythropoiesis. |
Volume: |
145 |
Issue: |
19 |
|
|
•
•
•
•
•
|
Protein Domain |
Type: |
Family |
Description: |
This entry includes highly related proteins with a Myc-type, basic helix-loop-helix (bHLH) domain, including T-cell acute lymphocytic leukemia proteins 1 and 2 (TAL1 and TAL2), helix-loop-helix proteins 1 and 2 (NHLH1/HEN1 and NHLH2/HEN2), and protein lyl-1 (LYL1). The bHLH domain is required for protein dimerization and DNA binding []. TAL1 may be a positive regulator of erythroid differentiation []. The TAL1 and TAL2 genes are altered in T-cell acute lymphoblastic leukemia []. The NHLH1 and NHLH2 genes are expressed in the developing nervous system, especially cell lines derived from neuroblastoma, PNET, and small cell lung cancer [], and the proteins may have regulatory functions in the developing nervous system []. LYL1 has a role in primitive erythropoiesis []. A chromosomal aberration involving the LYL1 gene may be a cause of a form of T-cell acute lymphoblastic leukemia []. |
|
•
•
•
•
•
|
Publication |
First Author: |
Good DJ |
Year: |
1997 |
Journal: |
Nat Genet |
Title: |
Hypogonadism and obesity in mice with a targeted deletion of the Nhlh2 gene. |
Volume: |
15 |
Issue: |
4 |
Pages: |
397-401 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
135
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
133
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
278
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
329
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
108
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
205
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
329
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
329
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
108
 |
Fragment?: |
false |
|
•
•
•
•
•
|