Type |
Details |
Score |
Publication |
First Author: |
Moreau MX |
Year: |
2023 |
Journal: |
Dev Cell |
Title: |
Repurposing of the multiciliation gene regulatory network in fate specification of Cajal-Retzius neurons. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Brignani S |
Year: |
2020 |
Journal: |
Neuron |
Title: |
Remotely Produced and Axon-Derived Netrin-1 Instructs GABAergic Neuron Migration and Dopaminergic Substantia Nigra Development. |
Volume: |
107 |
Issue: |
4 |
Pages: |
684-702.e9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Escalante A |
Year: |
2013 |
Journal: |
Neuron |
Title: |
Zic2-dependent axon midline avoidance controls the formation of major ipsilateral tracts in the CNS. |
Volume: |
80 |
Issue: |
6 |
Pages: |
1392-406 |
|
•
•
•
•
•
|
Publication |
First Author: |
Luo PM |
Year: |
2023 |
Journal: |
Development |
Title: |
Stromal netrin 1 coordinates renal arteriogenesis and mural cell differentiation. |
Volume: |
150 |
Issue: |
22 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Ji S |
Year: |
2021 |
Journal: |
PLoS One |
Title: |
Distinct expression of select and transcriptome-wide isolated 3'UTRs suggests critical roles in development and transition states. |
Volume: |
16 |
Issue: |
5 |
Pages: |
e0250669 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yang KY |
Year: |
2022 |
Journal: |
Cell Death Dis |
Title: |
Ca2+ homeostasis maintained by TMCO1 underlies corpus callosum development via ERK signaling. |
Volume: |
13 |
Issue: |
8 |
Pages: |
674 |
|
•
•
•
•
•
|
Publication |
First Author: |
Honeycutt SE |
Year: |
2023 |
Journal: |
Development |
Title: |
Netrin 1 directs vascular patterning and maturity in the developing kidney. |
Volume: |
150 |
Issue: |
22 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Prakash N |
Year: |
2009 |
Journal: |
Development |
Title: |
Nkx6-1 controls the identity and fate of red nucleus and oculomotor neurons in the mouse midbrain. |
Volume: |
136 |
Issue: |
15 |
Pages: |
2545-55 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zhang Y |
Year: |
2008 |
Journal: |
Development |
Title: |
Activation of beta-catenin signaling programs embryonic epidermis to hair follicle fate. |
Volume: |
135 |
Issue: |
12 |
Pages: |
2161-72 |
|
•
•
•
•
•
|
Publication |
First Author: |
Moreau MX |
Year: |
2021 |
Journal: |
Development |
Title: |
Single-cell transcriptomics of the early developing mouse cerebral cortex disentangle the spatial and temporal components of neuronal fate acquisition. |
Volume: |
148 |
Issue: |
14 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Dasgupta K |
Year: |
2019 |
Journal: |
Dev Biol |
Title: |
Molecular patterning of the embryonic cranial mesenchyme revealed by genome-wide transcriptional profiling. |
Volume: |
455 |
Issue: |
2 |
Pages: |
434-448 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hanley O |
Year: |
2016 |
Journal: |
Neuron |
Title: |
Parallel Pbx-Dependent Pathways Govern the Coalescence and Fate of Motor Columns. |
Volume: |
91 |
Issue: |
5 |
Pages: |
1005-1020 |
|
•
•
•
•
•
|
Publication |
First Author: |
Gibson P |
Year: |
2010 |
Journal: |
Nature |
Title: |
Subtypes of medulloblastoma have distinct developmental origins. |
Volume: |
468 |
Issue: |
7327 |
Pages: |
1095-9 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ye Q |
Year: |
2022 |
Journal: |
Development |
Title: |
Understanding the development of oral epithelial organs through single cell transcriptomic analysis. |
Volume: |
149 |
Issue: |
16 |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Carninci P |
Year: |
2005 |
Journal: |
Science |
Title: |
The transcriptional landscape of the mammalian genome. |
Volume: |
309 |
Issue: |
5740 |
Pages: |
1559-63 |
|
•
•
•
•
•
|
Publication |
First Author: |
Oeschger FM |
Year: |
2012 |
Journal: |
Cereb Cortex |
Title: |
Gene expression analysis of the embryonic subplate. |
Volume: |
22 |
Issue: |
6 |
Pages: |
1343-59 |
|
•
•
•
•
•
|
Publication |
First Author: |
Ackerman SL |
Year: |
1998 |
Journal: |
Genomics |
Title: |
Cloning and mapping of the UNC5C gene to human chromosome 4q21-q23. |
Volume: |
52 |
Issue: |
2 |
Pages: |
205-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Desai J |
Year: |
2006 |
Journal: |
Hum Mol Genet |
Title: |
Nell1-deficient mice have reduced expression of extracellular matrix proteins causing cranial and vertebral defects. |
Volume: |
15 |
Issue: |
8 |
Pages: |
1329-41 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shanghai Model Organisms Center |
Year: |
2017 |
Journal: |
MGI Direct Data Submission |
Title: |
Information obtained from the Shanghai Model Organisms Center (SMOC), Shanghai, China |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Miller JA |
Year: |
2013 |
Journal: |
Development |
Title: |
Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates. |
Volume: |
140 |
Issue: |
22 |
Pages: |
4633-44 |
|
•
•
•
•
•
|
Publication |
First Author: |
Blackshaw S |
Year: |
2004 |
Journal: |
PLoS Biol |
Title: |
Genomic analysis of mouse retinal development. |
Volume: |
2 |
Issue: |
9 |
Pages: |
E247 |
|
•
•
•
•
•
|
Publication |
First Author: |
MGI and IMPC |
Year: |
2017 |
Journal: |
MGI Direct Data Submission |
Title: |
MGI Curation of Endonuclease-Mediated Alleles (CRISPR) from the International Mouse Phenotyping Consortium (IMPC) |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Thompson CL |
Year: |
2014 |
Journal: |
Neuron |
Title: |
A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. |
Volume: |
83 |
Issue: |
2 |
Pages: |
309-323 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lennon G |
Year: |
1999 |
Journal: |
Database Download |
Title: |
WashU-HHMI Mouse EST Project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
International Mouse Strain Resource |
Year: |
2014 |
Journal: |
Database Download |
Title: |
MGI download of germline transmission data for alleles from IMSR strain data |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Wellcome Trust Sanger Institute |
Year: |
2009 |
Journal: |
MGI Direct Data Submission |
Title: |
Alleles produced for the KOMP project by the Wellcome Trust Sanger Institute |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GUDMAP Consortium |
Year: |
2004 |
Journal: |
www.gudmap.org |
Title: |
GUDMAP: the GenitoUrinary Development Molecular Anatomy Project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics and the International Mouse Phenotyping Consortium (IMPC) |
Year: |
2014 |
Journal: |
Database Release |
Title: |
Obtaining and Loading Phenotype Annotations from the International Mouse Phenotyping Consortium (IMPC) Database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
UniProt-GOA |
Year: |
2012 |
|
Title: |
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Magdaleno S |
Year: |
2006 |
Journal: |
PLoS Biol |
Title: |
BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. |
Volume: |
4 |
Issue: |
4 |
Pages: |
e86 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2003 |
|
Title: |
MGI Sequence Curation Reference |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Adams DJ |
Year: |
2024 |
Journal: |
Nature |
Title: |
Genetic determinants of micronucleus formation in vivo. |
Volume: |
627 |
Issue: |
8002 |
Pages: |
130-136 |
|
•
•
•
•
•
|
Publication |
First Author: |
MGD Nomenclature Committee |
Year: |
1995 |
|
Title: |
Nomenclature Committee Use |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GemPharmatech |
Year: |
2020 |
|
Title: |
GemPharmatech Website. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Skarnes WC |
Year: |
2011 |
Journal: |
Nature |
Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
Volume: |
474 |
Issue: |
7351 |
Pages: |
337-42 |
|
•
•
•
•
•
|
Publication |
First Author: |
AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators |
Year: |
2011 |
|
Title: |
Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
GOA curators |
Year: |
2016 |
|
Title: |
Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
The Jackson Laboratory Mouse Radiation Hybrid Database |
Year: |
2004 |
Journal: |
Database Release |
Title: |
Mouse T31 Radiation Hybrid Data Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Okazaki Y |
Year: |
2002 |
Journal: |
Nature |
Title: |
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. |
Volume: |
420 |
Issue: |
6915 |
Pages: |
563-73 |
|
•
•
•
•
•
|
Publication |
First Author: |
The Gene Ontology Consortium |
Year: |
2010 |
|
Title: |
Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Diez-Roux G |
Year: |
2011 |
Journal: |
PLoS Biol |
Title: |
A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
Volume: |
9 |
Issue: |
1 |
Pages: |
e1000582 |
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2002 |
|
Title: |
Mouse Genome Informatics Computational Sequence to Gene Associations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
MGI Genome Annotation Group and UniGene Staff |
Year: |
2015 |
Journal: |
Database Download |
Title: |
MGI-UniGene Interconnection Effort |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas |
Year: |
2010 |
|
Title: |
Annotation inferences using phylogenetic trees |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Database and National Center for Biotechnology Information |
Year: |
2000 |
Journal: |
Database Release |
Title: |
Entrez Gene Load |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Allen Institute for Brain Science |
Year: |
2004 |
Journal: |
Allen Institute |
Title: |
Allen Brain Atlas: mouse riboprobes |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
Year: |
2010 |
Journal: |
Database Download |
Title: |
Consensus CDS project |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Group |
Year: |
2003 |
Journal: |
Database Procedure |
Title: |
Automatic Encodes (AutoE) Reference |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Bairoch A |
Year: |
1999 |
Journal: |
Database Release |
Title: |
SWISS-PROT Annotated protein sequence database |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics |
Year: |
2010 |
Journal: |
Database Release |
Title: |
Protein Ontology Association Load. |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2005 |
|
Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
|
|
|
|
•
•
•
•
•
|
Publication |
First Author: |
Mouse Genome Informatics Scientific Curators |
Year: |
2009 |
Journal: |
Database Download |
Title: |
Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
|
|
|
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
931
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
950
 |
Fragment?: |
false |
|
•
•
•
•
•
|
GXD Expression |
Probe: |
MGI:4830304 |
Assay Type: |
In situ reporter (knock in) |
Annotation Date: |
2018-12-04 |
Strength: |
Present |
Sex: |
Not Specified |
Emaps: |
EMAPS:3270323 |
Pattern: |
Not Specified |
Stage: |
TS23 |
Assay Id: |
MGI:6258913 |
Age: |
embryonic day 15.5 |
|
Note: |
There was no colocalization with Unc5c staining. |
Specimen Label: |
5e |
Detected: |
true |
Specimen Num: |
2 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tong J |
Year: |
2001 |
Journal: |
J Biol Chem |
Title: |
Netrin stimulates tyrosine phosphorylation of the UNC-5 family of netrin receptors and induces Shp2 binding to the RCM cytodomain. |
Volume: |
276 |
Issue: |
44 |
Pages: |
40917-25 |
|
•
•
•
•
•
|
Publication |
First Author: |
Hibi K |
Year: |
2009 |
Journal: |
Anticancer Res |
Title: |
Changes in UNC5C gene methylation during human gastric carcinogenesis. |
Volume: |
29 |
Issue: |
11 |
Pages: |
4397-9 |
|
•
•
•
•
•
|
Allele |
Name: |
unc-5 netrin receptor C; endonuclease-mediated mutation 2, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Null/knockout |
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
|
•
•
•
•
•
|
Allele |
Name: |
unc-5 netrin receptor C; endonuclease-mediated mutation 1, Shanghai Model Organisms Center |
Allele Type: |
Endonuclease-mediated |
Attribute String: |
Conditional ready, No functional change |
|
•
•
•
•
•
|
Allele |
Name: |
unc-5 netrin receptor C; rostral cerebellar malformation (Tg(Ucp)1.23Kz) |
Allele Type: |
Transgenic |
|
|
•
•
•
•
•
|
Allele |
Name: |
unc-5 netrin receptor C; transgene insertion 5, Han-Woong Lee |
Allele Type: |
Transgenic |
|
|
•
•
•
•
•
|
Strain |
Attribute String: |
coisogenic, endonuclease-mediated mutation, mutant strain |
|
•
•
•
•
•
|
Protein Domain |
Type: |
Domain |
Description: |
This entry represents the death domain (DD) found in Uncoordinated-5C (UNC5C), which is a receptor for the secreted netrin-1 and plays a role in axonal guidance, angiogenesis, and apoptosis. It belongs to the UNC-5 family. UNC5C plays a critical role in the development of spinal accessory motor neurons []. Methylation of the UNC5C gene is associated with early stages of colorectal carcinogenesis [, ].UNC5 proteins are transmembrane proteins with an extracellular domain consisting of two immunoglobulin repeats, two thrombospondin type-I modules and an intracellular region containing a ZU-5 domain, UPA domain and a DD [, , ].DDs (Death domains) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes [, ]. |
|
•
•
•
•
•
|
Publication |
First Author: |
O'Sullivan ML |
Year: |
2012 |
Journal: |
Neuron |
Title: |
FLRT proteins are endogenous latrophilin ligands and regulate excitatory synapse development. |
Volume: |
73 |
Issue: |
5 |
Pages: |
903-10 |
|
•
•
•
•
•
|
Strain |
Attribute String: |
transgenic, mutant strain, congenic |
|
•
•
•
•
•
|
Allele |
Name: |
fibronectin leucine rich transmembrane protein 2; endonuclease-mediated mutation 1, Jeremy Kay |
Allele Type: |
Endonuclease-mediated |
|
|
•
•
•
•
•
|
Genotype |
Symbol: |
Unc5c/Unc5c |
Background: |
involves: FVB/N |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Unc5c/Unc5c |
Background: |
B6.Cg-Unc5c |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Unc5c/Unc5c |
Background: |
involves: C57BL/6J * SJL/J |
Zygosity: |
hm |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Strain |
Attribute String: |
congenic, endonuclease-mediated mutation, mutant strain |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Dcc/Dcc<+> Unc5c/Unc5c<+> |
Background: |
involves: 129X1/SvJ * C57BL/6J * SJL/J |
Zygosity: |
cx |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Genotype |
Symbol: |
Dcc/Dcc<+> Unc5c/Unc5c |
Background: |
involves: 129X1/SvJ * C57BL/6J * SJL/J |
Zygosity: |
cx |
Has Mutant Allele: |
true |
|
•
•
•
•
•
|
Publication |
First Author: |
Heiliger KJ |
Year: |
2012 |
Journal: |
Endocr Relat Cancer |
Title: |
Novel candidate genes of thyroid tumourigenesis identified in Trk-T1 transgenic mice. |
Volume: |
19 |
Issue: |
3 |
Pages: |
409-21 |
|
•
•
•
•
•
|
Publication |
First Author: |
Leonardo ED |
Year: |
1997 |
Journal: |
Nature |
Title: |
Vertebrate homologues of C. elegans UNC-5 are candidate netrin receptors. |
Volume: |
386 |
Issue: |
6627 |
Pages: |
833-8 |
|
•
•
•
•
•
|
Publication |
First Author: |
Rajasekharan S |
Year: |
2009 |
Journal: |
Genome Biol |
Title: |
The netrin protein family. |
Volume: |
10 |
Issue: |
9 |
Pages: |
239 |
|
•
•
•
•
•
|
Publication |
First Author: |
Shao A |
Year: |
2022 |
Journal: |
Sci Rep |
Title: |
Multiomics analysis reveals that hepatocyte nuclear factor 1β regulates axon guidance genes in the developing mouse kidney. |
Volume: |
12 |
Issue: |
1 |
Pages: |
17586 |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
950
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
950
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
876
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Protein |
Organism: |
Mus musculus/domesticus |
Length: |
876
 |
Fragment?: |
false |
|
•
•
•
•
•
|
Publication |
First Author: |
Feinstein E |
Year: |
1995 |
Journal: |
Trends Biochem Sci |
Title: |
The death domain: a module shared by proteins with diverse cellular functions. |
Volume: |
20 |
Issue: |
9 |
Pages: |
342-4 |
|
•
•
•
•
•
|
Publication |
First Author: |
Park HH |
Year: |
2007 |
Journal: |
Annu Rev Immunol |
Title: |
The death domain superfamily in intracellular signaling of apoptosis and inflammation. |
Volume: |
25 |
|
Pages: |
561-86 |
|
•
•
•
•
•
|
Publication |
First Author: |
Huttlin EL |
Year: |
2010 |
Journal: |
Cell |
Title: |
A tissue-specific atlas of mouse protein phosphorylation and expression. |
Volume: |
143 |
Issue: |
7 |
Pages: |
1174-89 |
|
•
•
•
•
•
|