| Type |
Details |
Score |
| Publication |
| First Author: |
Wei X |
| Year: |
2022 |
| Journal: |
Cell Rep |
| Title: |
Ablating Lgr5-expressing prostatic stromal cells activates the ERK-mediated mechanosensory signaling and disrupts prostate tissue homeostasis. |
| Volume: |
40 |
| Issue: |
10 |
| Pages: |
111313 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Thuret S |
| Year: |
2004 |
| Journal: |
Mol Cell Neurosci |
| Title: |
Identification and developmental analysis of genes expressed by dopaminergic neurons of the substantia nigra pars compacta. |
| Volume: |
25 |
| Issue: |
3 |
| Pages: |
394-405 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Kamileri I |
| Year: |
2012 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
Defective transcription initiation causes postnatal growth failure in a mouse model of nucleotide excision repair (NER) progeria. |
| Volume: |
109 |
| Issue: |
8 |
| Pages: |
2995-3000 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Mouse Genome Informatics and the Wellcome Trust Sanger Institute Mouse Genetics Project (MGP) |
| Year: |
2011 |
| Journal: |
Database Release |
| Title: |
Obtaining and Loading Phenotype Annotations from the Wellcome Trust Sanger Institute (WTSI) Mouse Resources Portal |
|
|
|
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
783
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
760
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
148
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
713
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
702
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
178
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
46
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
129
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
250
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
128
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
187
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
160
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
720
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
752
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
161
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Anthony C |
| Year: |
2004 |
| Journal: |
Arch Biochem Biophys |
| Title: |
The quinoprotein dehydrogenases for methanol and glucose. |
| Volume: |
428 |
| Issue: |
1 |
| Pages: |
2-9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Walsh MA |
| Year: |
2000 |
| Journal: |
Structure |
| Title: |
Structure of cyanase reveals that a novel dimeric and decameric arrangement of subunits is required for formation of the enzyme active site. |
| Volume: |
8 |
| Issue: |
5 |
| Pages: |
505-14 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Papageorgiou AC |
| Year: |
1998 |
| Journal: |
J Mol Biol |
| Title: |
Crystal structure of microbial superantigen staphylococcal enterotoxin B at 1.5 A resolution: implications for superantigen recognition by MHC class II molecules and T-cell receptors. |
| Volume: |
277 |
| Issue: |
1 |
| Pages: |
61-79 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Whittaker CA |
| Year: |
2002 |
| Journal: |
Mol Biol Cell |
| Title: |
Distribution and evolution of von Willebrand/integrin A domains: widely dispersed domains with roles in cell adhesion and elsewhere. |
| Volume: |
13 |
| Issue: |
10 |
| Pages: |
3369-87 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Tuckwell D |
| Year: |
1999 |
| Journal: |
Biochem Soc Trans |
| Title: |
Evolution of von Willebrand factor A (VWA) domains. |
| Volume: |
27 |
| Issue: |
6 |
| Pages: |
835-40 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Lo SH |
| Year: |
2004 |
| Journal: |
Int J Biochem Cell Biol |
| Title: |
Tensin. |
| Volume: |
36 |
| Issue: |
1 |
| Pages: |
31-4 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Gatta AT |
| Year: |
2015 |
| Journal: |
Elife |
| Title: |
A new family of StART domain proteins at membrane contact sites has a role in ER-PM sterol transport. |
| Volume: |
4 |
|
|
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Domain |
| Description: |
This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium [, ]. The protein is a complex of 2 polypeptide chains (light and heavy), with eleven known active peptidases in humans and two non-peptidase homologues known as calpamodulin and androglobin []. These include a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only [].All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains"in the 80kDa subunit [, ]: A 19-amino acid NH2-terminal sequence;Active site domain IIa;Active site domain IIb. Domain 2 showslow levels of sequence similarity to papain; although the catalytic His hasnot been located by biochemical means, it is likely that calpain and papainare related [].Domain III;An 18-amino acid extended sequence linking domain III to domain IV;Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. This entry represents domain III. The function of the domain III and I are currently unknown. Domain II is a cysteine protease and domain IV is a calcium binding domain. Calpains are believed to participate in intracellular signaling pathways mediated by calcium ions. |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
807
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
175
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
411
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
729
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
333
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Rosado CJ |
| Year: |
2007 |
| Journal: |
Science |
| Title: |
A common fold mediates vertebrate defense and bacterial attack. |
| Volume: |
317 |
| Issue: |
5844 |
| Pages: |
1548-51 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Devi S |
| Year: |
2021 |
| Journal: |
Immunity |
| Title: |
Adrenergic regulation of the vasculature impairs leukocyte interstitial migration and suppresses immune responses. |
|
|
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Sorimachi H |
| Year: |
1997 |
| Journal: |
Biochem J |
| Title: |
Structure and physiological function of calpains. |
| Volume: |
328 ( Pt 3) |
|
| Pages: |
721-32 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Sorimachi H |
| Year: |
1989 |
| Journal: |
J Biol Chem |
| Title: |
Molecular cloning of a novel mammalian calcium-dependent protease distinct from both m- and mu-types. Specific expression of the mRNA in skeletal muscle. |
| Volume: |
264 |
| Issue: |
33 |
| Pages: |
20106-11 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Hata A |
| Year: |
1989 |
| Journal: |
J Biol Chem |
| Title: |
Tandemly reiterated negative enhancer-like elements regulate transcription of a human gene for the large subunit of calcium-dependent protease. |
| Volume: |
264 |
| Issue: |
11 |
| Pages: |
6404-11 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Khorchid A |
| Year: |
2002 |
| Journal: |
Nat Struct Biol |
| Title: |
How calpain is activated by calcium. |
| Volume: |
9 |
| Issue: |
4 |
| Pages: |
239-41 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Sorimachi H |
| Year: |
2001 |
| Journal: |
J Biochem |
| Title: |
The structure of calpain. |
| Volume: |
129 |
| Issue: |
5 |
| Pages: |
653-64 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Reverter D |
| Year: |
2001 |
| Journal: |
Biol Chem |
| Title: |
Structural basis for possible calcium-induced activation mechanisms of calpains. |
| Volume: |
382 |
| Issue: |
5 |
| Pages: |
753-66 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Ono Y |
| Year: |
2012 |
| Journal: |
Biochim Biophys Acta |
| Title: |
Calpains: an elaborate proteolytic system. |
| Volume: |
1824 |
| Issue: |
1 |
| Pages: |
224-36 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Munton RP |
| Year: |
2007 |
| Journal: |
Mol Cell Proteomics |
| Title: |
Qualitative and quantitative analyses of protein phosphorylation in naive and stimulated mouse synaptosomal preparations. |
| Volume: |
6 |
| Issue: |
2 |
| Pages: |
283-93 |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
813
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
570
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Li J |
| Year: |
2018 |
| Journal: |
Database (Oxford) |
| Title: |
CITGeneDB: a comprehensive database of human and mouse genes enhancing or suppressing cold-induced thermogenesis validated by perturbation experiments in mice. |
| Volume: |
2018 |
|
|
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
666
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
714
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
703
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
507
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
543
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
421
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
690
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
703
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| HT Experiment |
|
| Experiment Type: |
RNA-Seq |
| Study Type: |
Baseline |
| Source: |
GEO |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
503
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
174
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
513
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
140
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
234
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
259
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
574
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Djordjevic S |
| Year: |
2002 |
| Journal: |
Trends Biochem Sci |
| Title: |
Structural insight into substrate specificity and regulatory mechanisms of phosphoinositide 3-kinases. |
| Volume: |
27 |
| Issue: |
8 |
| Pages: |
426-32 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Craik DJ |
| Year: |
1999 |
| Journal: |
J Mol Biol |
| Title: |
Plant cyclotides: A unique family of cyclic and knotted proteins that defines the cyclic cystine knot structural motif. |
| Volume: |
294 |
| Issue: |
5 |
| Pages: |
1327-36 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Svangård E |
| Year: |
2003 |
| Journal: |
Phytochemistry |
| Title: |
Primary and 3-D modelled structures of two cyclotides from Viola odorata. |
| Volume: |
64 |
| Issue: |
1 |
| Pages: |
135-42 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Rosengren KJ |
| Year: |
2003 |
| Journal: |
J Biol Chem |
| Title: |
Twists, knots, and rings in proteins. Structural definition of the cyclotide framework. |
| Volume: |
278 |
| Issue: |
10 |
| Pages: |
8606-16 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Daly NL |
| Year: |
2003 |
| Journal: |
J Biol Chem |
| Title: |
Disulfide folding pathways of cystine knot proteins. Tying the knot within the circular backbone of the cyclotides. |
| Volume: |
278 |
| Issue: |
8 |
| Pages: |
6314-22 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Nguyen GK |
| Year: |
2011 |
| Journal: |
J Biol Chem |
| Title: |
Discovery and characterization of novel cyclotides originated from chimeric precursors consisting of albumin-1 chain a and cyclotide domains in the Fabaceae family. |
| Volume: |
286 |
| Issue: |
27 |
| Pages: |
24275-87 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Araki K |
| Year: |
1999 |
| Journal: |
Cell Mol Biol (Noisy-le-grand) |
| Title: |
Exchangeable gene trap using the Cre/mutated lox system. |
| Volume: |
45 |
| Issue: |
5 |
| Pages: |
737-50 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Taniwaki T |
| Year: |
2005 |
| Journal: |
Dev Growth Differ |
| Title: |
Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. |
| Volume: |
47 |
| Issue: |
3 |
| Pages: |
163-72 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Bouwman J |
| Year: |
2004 |
| Journal: |
Neuroscience |
| Title: |
Quantification of synapse formation and maintenance in vivo in the absence of synaptic release. |
| Volume: |
126 |
| Issue: |
1 |
| Pages: |
115-26 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Sanders S |
| Year: |
1996 |
| Journal: |
Mouse Genome |
| Title: |
A Glucose-6-Phosphate Dehydrogenase (G6PD) pseudogene in the Mouse |
| Volume: |
94 |
| Issue: |
4 |
| Pages: |
880-882 |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
665
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
636
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
766
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
605
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
634
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
588
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
626
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
1426
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
465
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
1147
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
575
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
1515
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
595
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
490
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
505
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
931
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
727
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
376
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
577
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
727
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
87
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
963
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
460
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
1504
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
1426
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
640
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
370
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
1426
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
588
 |
| Fragment?: |
false |
|
•
•
•
•
•
|