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Search results 801 to 900 out of 960 for Hdac2

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Type Details Score
Publication        
First Author: Mouse Genome Informatics Scientific Curators
Year: 2003
Title: MGI Sequence Curation Reference
Publication
First Author: Carninci P
Year: 2005
Journal: Science
Title: The transcriptional landscape of the mammalian genome.
Volume: 309
Issue: 5740
Pages: 1559-63
Publication
First Author: Zambrowicz BP
Year: 2003
Journal: Proc Natl Acad Sci U S A
Title: Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention.
Volume: 100
Issue: 24
Pages: 14109-14
Publication        
First Author: GemPharmatech
Year: 2020
Title: GemPharmatech Website.
Publication      
First Author: Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI)
Year: 2008
Journal: Database Download
Title: Mouse Gene Trap Data Load from dbGSS
Publication        
First Author: Cyagen Biosciences Inc.
Year: 2022
Title: Cyagen Biosciences Website.
Publication        
First Author: AgBase, BHF-UCL, Parkinson's UK-UCL, dictyBase, HGNC, Roslin Institute, FlyBase and UniProtKB curators
Year: 2011
Title: Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity
Publication        
First Author: UniProt-GOA
Year: 2012
Title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
Publication      
First Author: The Jackson Laboratory Mouse Radiation Hybrid Database
Year: 2004
Journal: Database Release
Title: Mouse T31 Radiation Hybrid Data Load
Publication
First Author: Okazaki Y
Year: 2002
Journal: Nature
Title: Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
Volume: 420
Issue: 6915
Pages: 563-73
Publication        
First Author: The Gene Ontology Consortium
Year: 2010
Title: Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs
Publication        
First Author: Mouse Genome Informatics Scientific Curators
Year: 2002
Title: Mouse Genome Informatics Computational Sequence to Gene Associations
Publication      
First Author: Mouse Genome Informatics Scientific Curators
Year: 2010
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2).
Publication      
First Author: MGI Genome Annotation Group and UniGene Staff
Year: 2015
Journal: Database Download
Title: MGI-UniGene Interconnection Effort
Publication        
First Author: Marc Feuermann, Huaiyu Mi, Pascale Gaudet, Dustin Ebert, Anushya Muruganujan, Paul Thomas
Year: 2010
Title: Annotation inferences using phylogenetic trees
Publication      
First Author: Mouse Genome Database and National Center for Biotechnology Information
Year: 2000
Journal: Database Release
Title: Entrez Gene Load
Publication      
First Author: Allen Institute for Brain Science
Year: 2004
Journal: Allen Institute
Title: Allen Brain Atlas: mouse riboprobes
Publication      
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform
Publication      
First Author: Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI)
Year: 2010
Journal: Database Download
Title: Consensus CDS project
Publication      
First Author: Mouse Genome Informatics Group
Year: 2003
Journal: Database Procedure
Title: Automatic Encodes (AutoE) Reference
Publication      
First Author: Bairoch A
Year: 1999
Journal: Database Release
Title: SWISS-PROT Annotated protein sequence database
Publication        
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations
Publication      
First Author: Mouse Genome Informatics
Year: 2010
Journal: Database Release
Title: Protein Ontology Association Load.
Publication        
First Author: Mouse Genome Informatics Scientific Curators
Year: 2005
Title: Obtaining and loading genome assembly coordinates from NCBI annotations
Publication      
First Author: Mouse Genome Informatics Scientific Curators
Year: 2009
Journal: Database Download
Title: Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform
HT Experiment
Series Id: GSE6770
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
HT Experiment  
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
HT Experiment
Series Id: GSE27451
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
Publication
First Author: Zhu P
Year: 2004
Journal: Cancer Cell
Title: Induction of HDAC2 expression upon loss of APC in colorectal tumorigenesis.
Volume: 5
Issue: 5
Pages: 455-63
GXD Expression    
Assay Type: In situ reporter (knock in)
Annotation Date: 2022-06-10
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1610527
Pattern: Regionally restricted
Stage: TS27
Assay Id: MGI:7284687
Age: postnatal day 0
Note: Expression in cardiomyocytes. Co-localized with Hdac2 expression.
Specimen Label: 1A Hopx-LacZ
Detected: true
Specimen Num: 1
GXD Expression    
Assay Type: In situ reporter (knock in)
Annotation Date: 2022-06-10
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1610527
Pattern: Regionally restricted
Stage: TS27
Assay Id: MGI:7284687
Age: postnatal day 0
Note: Expression in cardiomyocytes. Co-localized with Hdac2 expression.
Specimen Label: 1A Hopx-LacZ
Detected: true
Specimen Num: 1
HT Experiment  
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
Publication
First Author: Gonzalez-Zuñiga M
Year: 2014
Journal: Mol Cell
Title: c-Abl stabilizes HDAC2 levels by tyrosine phosphorylation repressing neuronal gene expression in Alzheimer's disease.
Volume: 56
Issue: 1
Pages: 163-73
GXD Expression    
Probe: MGI:7284441
Assay Type: RNA in situ
Annotation Date: 2022-06-10
Strength: Present
Sex: Not Specified
Emaps: EMAPS:1610527
Pattern: Not Specified
Stage: TS27
Assay Id: MGI:7284688
Age: postnatal day 0
Specimen Label: 1D Hdac2 KO Hopx
Detected: true
Specimen Num: 2
HT Experiment
Series Id: GSE47745
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
HT Experiment
Series Id: GSE54785
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
HT Experiment
Series Id: GSE34786
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
Publication
First Author: Noh JH
Year: 2014
Journal: Cancer Res
Title: HDAC2 provides a critical support to malignant progression of hepatocellular carcinoma through feedback control of mTORC1 and AKT.
Volume: 74
Issue: 6
Pages: 1728-38
HT Experiment  
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
Protein
Organism: Mus musculus/domesticus
Length: 488  
Fragment?: false
Interaction Experiment
Description: HDAC1 and HDAC2 regulate oligodendrocyte differentiation by disrupting the beta-catenin-TCF interaction.
Interaction Experiment
Description: Compensatory functions of histone deacetylase 1 (HDAC1) and HDAC2 regulate transcription and apoptosis during mouse oocyte development.
Allele
Name: histone deacetylase 2; targeted mutation 1, Shanghai Model Organisms Center
Allele Type: Targeted
Attribute String: Conditional ready, No functional change
Interaction Experiment
Description: The p65 (RelA) subunit of NF-kappaB interacts with the histone deacetylase (HDAC) corepressors HDAC1 and HDAC2 to negatively regulate gene expression.
Strain
Attribute String: coisogenic, mutant strain, endonuclease-mediated mutation
Publication
First Author: Ashburner BP
Year: 2001
Journal: Mol Cell Biol
Title: The p65 (RelA) subunit of NF-kappaB interacts with the histone deacetylase (HDAC) corepressors HDAC1 and HDAC2 to negatively regulate gene expression.
Volume: 21
Issue: 20
Pages: 7065-77
Allele
Name: microtubule-associated protein tau; targeted mutation 3, Rudolf Jaenisch
Allele Type: Targeted
Attribute String: Inserted expressed sequence
Strain
Attribute String: mutant stock, targeted mutation
Genotype
Symbol: Mapt/Mapt
Background: involves: 129S4/SvJae * C57BL/6
Zygosity: hm
Has Mutant Allele: true
HT Experiment
Series Id: GSE23700
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
HT Experiment  
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: GEO
Protein Domain
Type: Domain
Description: This entry represents a domain found in DNA methyltransferase 1-associated protein 1 (DMAP1). DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1, and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].
Publication
First Author: Corona M
Year: 1991
Journal: Anat Histol Embryol
Title: [The sensitive nerve endings of the clitoris of the sow (Sus scrofa domesticus)].
Volume: 20
Issue: 4
Pages: 369-77
Publication
First Author: Syeda F
Year: 2011
Journal: J Biol Chem
Title: The replication focus targeting sequence (RFTS) domain is a DNA-competitive inhibitor of Dnmt1.
Volume: 286
Issue: 17
Pages: 15344-51
Protein Domain
Type: Domain
Description: This domain is part of a cytosine specific DNA methyltransferase enzyme (DNMT). It functions non-catalytically to target the protein towards replication foci. This allows the DNMT1 protein to methylate the correct residues. This domain targets DMAP1 and HDAC2 to the replication foci during the S phase of mitosis. They are thought to have some importance in conversion of critical histone lysine moieties [].A structure exists for the human cytosine specific DNA methyltransferase replication foci domain [].
Protein Domain
Type: Family
Description: This entry represents DNA (cytosine-5)-methyltransferase 1 (Dnmt1; ), which methylates CpG residues, with a preference for hemimethylated DNA. It is responsible for maintaining methylation patterns established in development. DNA methylation is coordinated with methylation of histones. Dnmt1 mediates transcriptional repression (silencing) by establishing a repressive transcription complex where the N terminus of Dnmt1 binds to HDAC2 (histone deacetylase-2) as well as to DMAP1 (Dnmt1-associated protein) []. LSH, which is related to the SNF2 chromatin-remodelling ATPases, is also required for efficient DNA methylation [].
HT Experiment  
Experiment Type: RNA-Seq
Study Type: WT vs. Mutant
Source: GEO
GO Term
Publication  
First Author: Kolos JM
Year: 2018
Journal: Front Pharmacol
Title: FKBP Ligands-Where We Are and Where to Go?
Volume: 9
Pages: 1425
Publication
First Author: Yang WM
Year: 2001
Journal: EMBO J
Title: The FK506-binding protein 25 functionally associates with histone deacetylases and with transcription factor YY1.
Volume: 20
Issue: 17
Pages: 4814-25
Publication
First Author: Zhu W
Year: 2017
Journal: Theranostics
Title: FKBP3 Promotes Proliferation of Non-Small Cell Lung Cancer Cells through Regulating Sp1/HDAC2/p27.
Volume: 7
Issue: 12
Pages: 3078-3089
Publication
First Author: Dilworth D
Year: 2017
Journal: Nucleic Acids Res
Title: The basic tilted helix bundle domain of the prolyl isomerase FKBP25 is a novel double-stranded RNA binding module.
Volume: 45
Issue: 20
Pages: 11989-12004
Protein Domain
Type: Family
Description: FKBP3, also known as FKBP25, contains the N-terminal basic tilted helix bundle (BTHB) domain and the C-terminal PPIase domain. It is a nuclear prolyl isomerase that interacts directlywith nucleic acids []. It interacts with the histone deacetylases HDAC1 and HDAC2 as well as with their transcriptional regulator Yin Yang 1 (YY1) []. It is also a microtubule-associated protein that shuttles between nucleus and cytoplasm and stabilizes the microtubule network by direct binding of the C-terminal PPIase domain []. It plays a role in the proliferation of non-small cell type lung cancer cells (NSCLC) by modulating Sp1/HDAC2/p27 [].
HT Experiment
Series Id: GSE35432
Experiment Type: transcription profiling by array
Study Type: WT vs. Mutant
Source: ArrayExpress
Protein
Organism: Mus musculus/domesticus
Length: 468  
Fragment?: false
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein
Organism: Mus musculus/domesticus
Length: 162  
Fragment?: true
Protein
Organism: Mus musculus/domesticus
Length: 76  
Fragment?: false
Protein
Organism: Mus musculus/domesticus
Length: 88  
Fragment?: true
Publication
First Author: Yang SH
Year: 2005
Journal: EMBO J
Title: PIASx acts as an Elk-1 coactivator by facilitating derepression.
Volume: 24
Issue: 12
Pages: 2161-71
Protein Domain
Type: Family
Description: SUMO proteins are ubiquitin like proteins that are covalently attached to and detached from other proteins in cells to modify their function. SUMO is first activated in an ATP-dependent reaction by formation of a thioester bond with an E1 (SUMO-activating) enzyme and then transferred to the SUMO conjugating (E2) enzyme Ubc9. Ubc9 catalyses the formation of an isopeptide bond between the C-terminal of SUMO and the amino group of lysine in the target protein. Sumoylated proteins can be targeted for different cellular processes, such as nuclear transport, transcriptional regulation, apoptosis, and protein stability []. PIAS2 is an E3-type small ubiquitin-like modifier (SUMO) ligase, stabilising the interaction between Ubc9 and the substrate, and is a SUMO-tethering factor. It plays a crucial role as a transcriptional coregulation in various cellular pathways, including the STAT pathway, the p53 pathway and the steroid hormone signaling pathway. The effects of this transcriptional coregulation, transactivation or silencing may vary depending upon the biological context and PIAS2 isoform studied. However, it seems to be mostly involved in gene silencing. It binds to sumoylated ELK1 and enhances its transcriptional activity by preventing recruitment of HDAC2 by ELK1, thus reversing SUMO-mediated repression of ELK1 transactivation activity [, ].
Publication
First Author: Zhang T
Year: 2018
Journal: Nat Commun
Title: A variant NuRD complex containing PWWP2A/B excludes MBD2/3 to regulate transcription at active genes.
Volume: 9
Issue: 1
Pages: 3798
Publication
First Author: Huang C
Year: 2014
Journal: Cell Rep
Title: The BCL6 RD2 domain governs commitment of activated B cells to form germinal centers.
Volume: 8
Issue: 5
Pages: 1497-508
Publication
First Author: Hui Y
Year: 2024
Journal: iScience
Title: High glucose impairs cognitive function through inducing mitochondrial calcium overload in Treg cells.
Volume: 27
Issue: 1
Pages: 108689
Publication  
First Author: Hosokawa H
Year: 2016
Journal: Nat Commun
Title: Akt1-mediated Gata3 phosphorylation controls the repression of IFNγ in memory-type Th2 cells.
Volume: 7
Pages: 11289
Publication
First Author: Liu R
Year: 2009
Journal: Cancer Res
Title: FOXP3 up-regulates p21 expression by site-specific inhibition of histone deacetylase 2/histone deacetylase 4 association to the locus.
Volume: 69
Issue: 6
Pages: 2252-9
Publication
First Author: Tanaka S
Year: 2020
Journal: Nat Immunol
Title: Tet2 and Tet3 in B cells are required to repress CD86 and prevent autoimmunity.
Volume: 21
Issue: 8
Pages: 950-961
Publication  
First Author: Jin X
Year: 2017
Journal: Front Cell Neurosci
Title: Neuronal Nitric Oxide Synthase in Neural Stem Cells Induces Neuronal Fate Commitment via the Inhibition of Histone Deacetylase 2.
Volume: 11
Pages: 66
Publication
First Author: Baumann C
Year: 2020
Journal: Nat Commun
Title: Helicase LSH/Hells regulates kinetochore function, histone H3/Thr3 phosphorylation and centromere transcription during oocyte meiosis.
Volume: 11
Issue: 1
Pages: 4486
Publication
First Author: Kennedy AJ
Year: 2016
Journal: Cell Rep
Title: Tcf4 Regulates Synaptic Plasticity, DNA Methylation, and Memory Function.
Volume: 16
Issue: 10
Pages: 2666-2685
Publication
First Author: Rosenberg LH
Year: 2018
Journal: Cell Rep
Title: HDAC3 Regulates the Transition to the Homeostatic Myelinating Schwann Cell State.
Volume: 25
Issue: 10
Pages: 2755-2765.e5
Publication
First Author: Fukumoto T
Year: 2018
Journal: Cell Rep
Title: Repurposing Pan-HDAC Inhibitors for ARID1A-Mutated Ovarian Cancer.
Volume: 22
Issue: 13
Pages: 3393-3400
Publication
First Author: Matsui K
Year: 2013
Journal: Biochem Biophys Res Commun
Title: Mediator subunit MED1 is a T3-dependent and T3-independent coactivator on the thyrotropin β gene promoter.
Volume: 440
Issue: 1
Pages: 184-9
Publication
First Author: Rei D
Year: 2015
Journal: Proc Natl Acad Sci U S A
Title: Basolateral amygdala bidirectionally modulates stress-induced hippocampal learning and memory deficits through a p25/Cdk5-dependent pathway.
Volume: 112
Issue: 23
Pages: 7291-6
Publication
First Author: Zhao Z
Year: 2010
Journal: Proc Natl Acad Sci U S A
Title: Epigenetic alterations regulate estradiol-induced enhancement of memory consolidation.
Volume: 107
Issue: 12
Pages: 5605-10
Publication
First Author: Qin L
Year: 2018
Journal: Nat Neurosci
Title: Social deficits in Shank3-deficient mouse models of autism are rescued by histone deacetylase (HDAC) inhibition.
Volume: 21
Issue: 4
Pages: 564-575
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Protein Coding Gene
Type: protein_coding_gene
Organism: mouse, laboratory
Publication
First Author: Zhang Y
Year: 1999
Journal: Genes Dev
Title: Analysis of the NuRD subunits reveals a histone deacetylase core complex and a connection with DNA methylation.
Volume: 13
Issue: 15
Pages: 1924-35
Publication
First Author: Cong L
Year: 2011
Journal: J Biol Chem
Title: SUMOylation and SUMO-interacting motif (SIM) of metastasis tumor antigen 1 (MTA1) synergistically regulate its transcriptional repressor function.
Volume: 286
Issue: 51
Pages: 43793-808
Publication
First Author: Backlund MG
Year: 2008
Journal: Cancer Res
Title: Repression of 15-hydroxyprostaglandin dehydrogenase involves histone deacetylase 2 and snail in colorectal cancer.
Volume: 68
Issue: 22
Pages: 9331-7
Publication
First Author: Nguyen-Tran DH
Year: 2014
Journal: Dis Model Mech
Title: Molecular mechanism of sphingosine-1-phosphate action in Duchenne muscular dystrophy.
Volume: 7
Issue: 1
Pages: 41-54
Publication
First Author: Vilhais-Neto GC
Year: 2017
Journal: Nat Commun
Title: The WHHERE coactivator complex is required for retinoic acid-dependent regulation of embryonic symmetry.
Volume: 8
Issue: 1
Pages: 728
Publication
First Author: Marinho D
Year: 2023
Journal: Aging Cell
Title: Reduction of class I histone deacetylases ameliorates ER-mitochondria cross-talk in Alzheimer's disease.
Volume: 22
Issue: 8
Pages: e13895
Publication
First Author: Hendrickx A
Year: 2014
Journal: PLoS One
Title: Epigenetic regulations of immediate early genes expression involved in memory formation by the amyloid precursor protein of Alzheimer disease.
Volume: 9
Issue: 6
Pages: e99467
Publication
First Author: Vengoji R
Year: 2021
Journal: J Exp Clin Cancer Res
Title: Differential gene expression-based connectivity mapping identified novel drug candidate and improved Temozolomide efficacy for Glioblastoma.
Volume: 40
Issue: 1
Pages: 335
Publication
First Author: Kumar P
Year: 2014
Journal: J Biol Chem
Title: Histone deacetylase inhibitors modulate the transcriptional regulation of guanylyl cyclase/natriuretic peptide receptor-a gene: interactive roles of modified histones, histone acetyltransferase, p300, AND Sp1.
Volume: 289
Issue: 10
Pages: 6991-7002