| Type |
Details |
Score |
| Publication |
| First Author: |
Fujimori S |
| Year: |
2010 |
| Journal: |
Dev Biol |
| Title: |
Wnt/β-catenin signaling in the dental mesenchyme regulates incisor development by regulating Bmp4. |
| Volume: |
348 |
| Issue: |
1 |
| Pages: |
97-106 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Bottasso-Arias N |
| Year: |
2022 |
| Journal: |
Am J Physiol Lung Cell Mol Physiol |
| Title: |
BMP4 and Wnt signaling interact to promote mouse tracheal mesenchyme morphogenesis. |
| Volume: |
322 |
| Issue: |
2 |
| Pages: |
L224-L242 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Bensoussan-Trigano V |
| Year: |
2011 |
| Journal: |
Dev Dyn |
| Title: |
Msx1 and Msx2 in limb mesenchyme modulate digit number and identity. |
| Volume: |
240 |
| Issue: |
5 |
| Pages: |
1190-202 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Dassule HR |
| Year: |
2000 |
| Journal: |
Development |
| Title: |
Sonic hedgehog regulates growth and morphogenesis of the tooth. |
| Volume: |
127 |
| Issue: |
22 |
| Pages: |
4775-85 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Thomason HA |
| Year: |
2008 |
| Journal: |
Dev Biol |
| Title: |
Facial clefting in Tp63 deficient mice results from altered Bmp4, Fgf8 and Shh signaling. |
| Volume: |
321 |
| Issue: |
1 |
| Pages: |
273-82 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Capellini TD |
| Year: |
2008 |
| Journal: |
Dev Biol |
| Title: |
Pbx1/Pbx2 govern axial skeletal development by controlling Polycomb and Hox in mesoderm and Pax1/Pax9 in sclerotome. |
| Volume: |
321 |
| Issue: |
2 |
| Pages: |
500-14 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Gu WX |
| Year: |
2010 |
| Journal: |
Dev Dyn |
| Title: |
Identification of genes controlled by LMX1B in E13.5 mouse limbs. |
| Volume: |
239 |
| Issue: |
8 |
| Pages: |
2246-55 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
López-Delgado AC |
| Year: |
2021 |
| Journal: |
Development |
| Title: |
Axial skeleton anterior-posterior patterning is regulated through feedback regulation between Meis transcription factors and retinoic acid. |
| Volume: |
148 |
| Issue: |
1 |
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Schwabe GC |
| Year: |
2004 |
| Journal: |
Dev Dyn |
| Title: |
Ror2 knockout mouse as a model for the developmental pathology of autosomal recessive Robinow syndrome. |
| Volume: |
229 |
| Issue: |
2 |
| Pages: |
400-10 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Zhao H |
| Year: |
2008 |
| Journal: |
Dev Biol |
| Title: |
TGF-beta type I receptor Alk5 regulates tooth initiation and mandible patterning in a type II receptor-independent manner. |
| Volume: |
320 |
| Issue: |
1 |
| Pages: |
19-29 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Yuan Y |
| Year: |
2020 |
| Journal: |
Sci Adv |
| Title: |
Spatiotemporal cellular movement and fate decisions during first pharyngeal arch morphogenesis. |
| Volume: |
6 |
| Issue: |
51 |
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Funato N |
| Year: |
2016 |
| Journal: |
Sci Rep |
| Title: |
Specification of jaw identity by the Hand2 transcription factor. |
| Volume: |
6 |
|
| Pages: |
28405 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Itou J |
| Year: |
2011 |
| Journal: |
Dev Dyn |
| Title: |
HMGB factors are required for posterior digit development through integrating signaling pathway activities. |
| Volume: |
240 |
| Issue: |
5 |
| Pages: |
1151-62 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Nakaniwa M |
| Year: |
2019 |
| Journal: |
Gene Expr Patterns |
| Title: |
Primary cilia in murine palatal rugae development. |
| Volume: |
34 |
|
| Pages: |
119062 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Butterfield NC |
| Year: |
2009 |
| Journal: |
Development |
| Title: |
Patched 1 is a crucial determinant of asymmetry and digit number in the vertebrate limb. |
| Volume: |
136 |
| Issue: |
20 |
| Pages: |
3515-24 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Nakamura E |
| Year: |
2021 |
| Journal: |
Commun Biol |
| Title: |
Zfhx4 regulates endochondral ossification as the transcriptional platform of Osterix in mice. |
| Volume: |
4 |
| Issue: |
1 |
| Pages: |
1258 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Snitow ME |
| Year: |
2015 |
| Journal: |
Development |
| Title: |
Ezh2 represses the basal cell lineage during lung endoderm development. |
| Volume: |
142 |
| Issue: |
1 |
| Pages: |
108-17 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Pappas MP |
| Year: |
2024 |
| Journal: |
Development |
| Title: |
Sall4 regulates posterior trunk mesoderm development by promoting mesodermal gene expression and repressing neural genes in the mesoderm. |
| Volume: |
151 |
| Issue: |
5 |
|
|
•
•
•
•
•
|
| Publication |
| First Author: |
Sharma D |
| Year: |
2021 |
| Journal: |
PLoS Genet |
| Title: |
HES1 is a novel downstream modifier of the SHH-GLI3 Axis in the development of preaxial polydactyly. |
| Volume: |
17 |
| Issue: |
12 |
| Pages: |
e1009982 |
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•
•
•
•
•
|
| Publication |
| First Author: |
You L |
| Year: |
2015 |
| Journal: |
J Biol Chem |
| Title: |
The chromatin regulator Brpf1 regulates embryo development and cell proliferation. |
| Volume: |
290 |
| Issue: |
18 |
| Pages: |
11349-64 |
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•
•
•
•
•
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| Publication |
| First Author: |
Lopez-Rios J |
| Year: |
2012 |
| Journal: |
Dev Cell |
| Title: |
GLI3 constrains digit number by controlling both progenitor proliferation and BMP-dependent exit to chondrogenesis. |
| Volume: |
22 |
| Issue: |
4 |
| Pages: |
837-48 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Welsh IC |
| Year: |
2009 |
| Journal: |
Dev Biol |
| Title: |
Signaling integration in the rugae growth zone directs sequential SHH signaling center formation during the rostral outgrowth of the palate. |
| Volume: |
336 |
| Issue: |
1 |
| Pages: |
53-67 |
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•
•
•
•
•
|
| Publication |
| First Author: |
Nie X |
| Year: |
2020 |
| Journal: |
Dev Biol |
| Title: |
mTOR plays a pivotal role in multiple processes of enamel organ development principally through the mTORC1 pathway and in part via regulating cytoskeleton dynamics. |
| Volume: |
467 |
| Issue: |
1-2 |
| Pages: |
77-87 |
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•
•
•
•
•
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| Publication |
| First Author: |
Laurikkala J |
| Year: |
2006 |
| Journal: |
Development |
| Title: |
p63 regulates multiple signalling pathways required for ectodermal organogenesis and differentiation. |
| Volume: |
133 |
| Issue: |
8 |
| Pages: |
1553-63 |
|
•
•
•
•
•
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| Publication |
| First Author: |
Kettunen P |
| Year: |
2007 |
| Journal: |
Mech Dev |
| Title: |
Fgfr2b mediated epithelial-mesenchymal interactions coordinate tooth morphogenesis and dental trigeminal axon patterning. |
| Volume: |
124 |
| Issue: |
11-12 |
| Pages: |
868-83 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Zoupa M |
| Year: |
2018 |
| Journal: |
BMC Genomics |
| Title: |
Gene expression profiling in the developing secondary palate in the absence of Tbx1 function. |
| Volume: |
19 |
| Issue: |
1 |
| Pages: |
429 |
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•
•
•
•
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| Publication |
| First Author: |
Jeon S |
| Year: |
2016 |
| Journal: |
PLoS Genet |
| Title: |
Anteroposterior Limb Skeletal Patterning Requires the Bifunctional Action of SWI/SNF Chromatin Remodeling Complex in Hedgehog Pathway. |
| Volume: |
12 |
| Issue: |
3 |
| Pages: |
e1005915 |
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•
•
•
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| Publication |
| First Author: |
Zirzow S |
| Year: |
2009 |
| Journal: |
Dev Biol |
| Title: |
Expression and requirement of T-box transcription factors Tbx2 and Tbx3 during secondary palate development in the mouse. |
| Volume: |
336 |
| Issue: |
2 |
| Pages: |
145-55 |
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•
•
•
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| Publication |
| First Author: |
Kim HT |
| Year: |
2019 |
| Journal: |
Proc Natl Acad Sci U S A |
| Title: |
WNT/RYK signaling restricts goblet cell differentiation during lung development and repair. |
| Volume: |
116 |
| Issue: |
51 |
| Pages: |
25697-25706 |
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•
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| First Author: |
Mo Q |
| Year: |
2017 |
| Journal: |
JCI Insight |
| Title: |
Identification and characterization of a supraclavicular brown adipose tissue in mice. |
| Volume: |
2 |
| Issue: |
11 |
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•
•
•
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| First Author: |
Ye Q |
| Year: |
2022 |
| Journal: |
Development |
| Title: |
Understanding the development of oral epithelial organs through single cell transcriptomic analysis. |
| Volume: |
149 |
| Issue: |
16 |
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•
•
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| First Author: |
Jasmine |
| Year: |
2025 |
| Journal: |
Dev Biol |
| Title: |
Epithelial and mesenchymal compartments of the developing bladder and urethra display spatially distinct gene expression patterns. |
| Volume: |
520 |
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| Pages: |
155-170 |
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•
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| First Author: |
Perera SN |
| Year: |
2020 |
| Journal: |
Glia |
| Title: |
Insights into olfactory ensheathing cell development from a laser-microdissection and transcriptome-profiling approach. |
| Volume: |
68 |
| Issue: |
12 |
| Pages: |
2550-2584 |
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| First Author: |
Neidhardt L |
| Year: |
2000 |
| Journal: |
Mech Dev |
| Title: |
Large-scale screen for genes controlling mammalian embryogenesis, using high-throughput gene expression analysis in mouse embryos. |
| Volume: |
98 |
| Issue: |
1-2 |
| Pages: |
77-94 |
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| First Author: |
Lewandowski JP |
| Year: |
2015 |
| Journal: |
Dev Biol |
| Title: |
Spatiotemporal regulation of GLI target genes in the mammalian limb bud. |
| Volume: |
406 |
| Issue: |
1 |
| Pages: |
92-103 |
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| First Author: |
Shimizu H |
| Year: |
2013 |
| Journal: |
PLoS One |
| Title: |
The AERO system: a 3D-like approach for recording gene expression patterns in the whole mouse embryo. |
| Volume: |
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10 |
| Pages: |
e75754 |
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| First Author: |
Wiese CB |
| Year: |
2012 |
| Journal: |
Front Neurosci |
| Title: |
A genome-wide screen to identify transcription factors expressed in pelvic Ganglia of the lower urinary tract. |
| Volume: |
6 |
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130 |
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| First Author: |
International Committee on Standardized Genetic Nomenclature for Mice |
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1993 |
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Nomenclature rule change to delete hyphens and parentheses from mouse locus symbols |
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| First Author: |
Ingham NJ |
| Year: |
2019 |
| Journal: |
PLoS Biol |
| Title: |
Mouse screen reveals multiple new genes underlying mouse and human hearing loss. |
| Volume: |
17 |
| Issue: |
4 |
| Pages: |
e3000194 |
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| First Author: |
Yokoyama S |
| Year: |
2009 |
| Journal: |
Dev Cell |
| Title: |
A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. |
| Volume: |
17 |
| Issue: |
6 |
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| First Author: |
Mouse Genome Informatics Scientific Curators |
| Year: |
2005 |
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| Title: |
Mouse Synonym Curation |
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| First Author: |
Gray PA |
| Year: |
2004 |
| Journal: |
Science |
| Title: |
Mouse brain organization revealed through direct genome-scale TF expression analysis. |
| Volume: |
306 |
| Issue: |
5705 |
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2255-7 |
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| First Author: |
Thompson CL |
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2014 |
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Neuron |
| Title: |
A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. |
| Volume: |
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309-323 |
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| First Author: |
Wellcome Trust Sanger Institute |
| Year: |
2009 |
| Journal: |
MGI Direct Data Submission |
| Title: |
Alleles produced for the KOMP project by the Wellcome Trust Sanger Institute |
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| First Author: |
GUDMAP Consortium |
| Year: |
2004 |
| Journal: |
www.gudmap.org |
| Title: |
GUDMAP: the GenitoUrinary Development Molecular Anatomy Project |
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Carninci P |
| Year: |
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| Journal: |
Science |
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The transcriptional landscape of the mammalian genome. |
| Volume: |
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| Issue: |
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GemPharmatech |
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Skarnes WC |
| Year: |
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| Journal: |
Nature |
| Title: |
A conditional knockout resource for the genome-wide study of mouse gene function. |
| Volume: |
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| First Author: |
GOA curators |
| Year: |
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Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara |
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The Jackson Laboratory Mouse Radiation Hybrid Database |
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Mouse T31 Radiation Hybrid Data Load |
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The Gene Ontology Consortium |
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Automated transfer of experimentally-verified manual GO annotation data to mouse-human orthologs |
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PLoS Biol |
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A high-resolution anatomical atlas of the transcriptome in the mouse embryo. |
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Mouse Genome Informatics Scientific Curators |
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Mouse Genome Informatics Computational Sequence to Gene Associations |
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Mouse Genome Informatics Scientific Curators |
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Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). |
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Mouse Genome Database and National Center for Biotechnology Information |
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Database Release |
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Entrez Gene Load |
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Allen Institute for Brain Science |
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Allen Institute |
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Allen Brain Atlas: mouse riboprobes |
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Mouse Genome Informatics Scientific Curators |
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2009 |
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Database Download |
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Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform |
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| First Author: |
Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI) |
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2010 |
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Database Download |
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Consensus CDS project |
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Mouse Genome Informatics Group |
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Mouse Genome Informatics Scientific Curators |
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2005 |
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| Title: |
Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations |
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Mouse Genome Informatics |
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2010 |
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Database Release |
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Protein Ontology Association Load. |
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Mouse Genome Informatics Scientific Curators |
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2005 |
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| Title: |
Obtaining and loading genome assembly coordinates from NCBI annotations |
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| First Author: |
Mouse Genome Informatics Scientific Curators |
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2009 |
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Database Download |
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Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform |
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•
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| HT Experiment |
|
| Experiment Type: |
transcription profiling by array |
| Study Type: |
WT vs. Mutant |
| Source: |
GEO |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Fujihara KM |
| Year: |
2018 |
| Journal: |
J Pathol |
| Title: |
Bridging the molecular divide: alcohol-induced downregulation of PAX9 and tumour development. |
| Volume: |
244 |
| Issue: |
4 |
| Pages: |
386-388 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:1334951 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2022-08-05 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1638316 |
| Pattern: |
Regionally restricted |
| Stage: |
TS16 |
| Assay Id: |
MGI:7327563 |
| Age: |
embryonic day 10.0 |
|
| Note: |
Expressed in domains covered and extended medial and lateral to the Pax9 expression domains in the underlying mesenchyme. |
| Specimen Label: |
2B |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:1334951 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2022-08-05 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1638315 |
| Pattern: |
Regionally restricted |
| Stage: |
TS15 |
| Assay Id: |
MGI:7327563 |
| Age: |
embryonic day 9.5 |
|
| Note: |
Expressed in domains covered and extended medial and lateral to the Pax9 expression domains in the underlying mesenchyme. |
| Specimen Label: |
not shown |
| Detected: |
true |
| Specimen Num: |
6 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7327545 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2022-08-05 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1638316 |
| Pattern: |
Regionally restricted |
| Stage: |
TS16 |
| Assay Id: |
MGI:7327564 |
| Age: |
embryonic day 10.0 |
|
| Note: |
Expressed in ectoderm overlying the distal-medial region of the mandibular arch, between the two Pax9 expression domains, but not in the ectoderm directly over or lateral to them. |
| Specimen Label: |
3A |
| Detected: |
true |
| Specimen Num: |
1 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:7327545 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2022-08-05 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1638316 |
| Pattern: |
Regionally restricted |
| Stage: |
TS16 |
| Assay Id: |
MGI:7327564 |
| Age: |
embryonic day 10.0 |
|
| Note: |
Expressed in ectoderm overlying the distal-medial region of the mandibular arch, between the two Pax9 expression domains, but not in the ectoderm directly over or lateral to them. |
| Specimen Label: |
3D |
| Detected: |
true |
| Specimen Num: |
2 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:1334951 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2022-08-05 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1638317 |
| Pattern: |
Regionally restricted |
| Stage: |
TS17 |
| Assay Id: |
MGI:7327563 |
| Age: |
embryonic day 10.5 |
|
| Note: |
Coexpressed with Bmp4 in the ectoderm that overlies the region of weak Pax9 expression between the sites of prospective incisor and molar development. |
| Specimen Label: |
3H |
| Detected: |
true |
| Specimen Num: |
3 |
|
•
•
•
•
•
|
| GXD Expression |
| Probe: |
MGI:1334951 |
| Assay Type: |
RNA in situ |
| Annotation Date: |
2022-08-05 |
| Strength: |
Present |
| Sex: |
Not Specified |
| Emaps: |
EMAPS:1638317 |
| Pattern: |
Regionally restricted |
| Stage: |
TS17 |
| Assay Id: |
MGI:7327563 |
| Age: |
embryonic day 10.5 |
|
| Note: |
Coexpressed with Bmp4 in the ectoderm that overlies the region of weak Pax9 expression between the sites of prospective incisor and molar development. |
| Specimen Label: |
3K |
| Detected: |
true |
| Specimen Num: |
4 |
|
•
•
•
•
•
|
| Allele |
| Name: |
paired box 9; endonuclease-mediated mutation 1, Yang Chai |
| Allele Type: |
Endonuclease-mediated |
| Attribute String: |
Inducible, Recombinase |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
mutant strain, endonuclease-mediated mutation |
|
•
•
•
•
•
|
| Allele |
| Name: |
paired box 9; targeted mutation 1.1, Simon Bamforth |
| Allele Type: |
Targeted |
| Attribute String: |
Null/knockout, Recombinase |
|
•
•
•
•
•
|
| Strain |
| Attribute String: |
congenic, mutant strain, targeted mutation |
|
•
•
•
•
•
|
| HT Experiment |
|
| Experiment Type: |
RNA-Seq |
| Study Type: |
WT vs. Mutant |
| Source: |
GEO |
|
•
•
•
•
•
|
| Genotype |
| Symbol: |
Gt(ROSA)26Sor/Gt(ROSA)26Sor<+> Pax9/Pax9<+> |
| Background: |
involves: 129X1/SvJ |
| Zygosity: |
cn |
| Has Mutant Allele: |
true |
|
•
•
•
•
•
|
| Genotype |
| Symbol: |
Gt(ROSA)26Sor/Gt(ROSA)26Sor<+> Pax9/Pax9<+> |
| Background: |
involves: 129S4/SvJaeSor |
| Zygosity: |
cn |
| Has Mutant Allele: |
true |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Semenza GL |
| Year: |
1996 |
| Journal: |
Genomics |
| Title: |
Assignment of the hypoxia-inducible factor 1alpha gene to a region of conserved synteny on mouse chromosome 12 and human chromosome 14q. |
| Volume: |
34 |
| Issue: |
3 |
| Pages: |
437-9 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Santagati F |
| Year: |
2003 |
| Journal: |
Genetics |
| Title: |
Identification of Cis-regulatory elements in the mouse Pax9/Nkx2-9 genomic region: implication for evolutionary conserved synteny. |
| Volume: |
165 |
| Issue: |
1 |
| Pages: |
235-42 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Takimoto A |
| Year: |
2013 |
| Journal: |
Exp Cell Res |
| Title: |
Pax1 acts as a negative regulator of chondrocyte maturation. |
| Volume: |
319 |
| Issue: |
20 |
| Pages: |
3128-39 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Family |
| Description: |
PAX1 belongs to the PAX family. PAX1 and PAX9 synergistically act in the proper formation of the vertebral column and play an important role in the formation of the vertebrate axial skeleton, regulating cell proliferation and chondrogenic specification in the sclerotome []. PAX1 also functions as a negative regulator of chondrocyte maturation [].PAX family members are transcription factors characterised by a ~128-amino-acid DNA-binding paired domain that makes sequence specific contacts with DNA []. In mammals, there are nine Pax proteins (PAX1-9). They regulate the morphogenesis of a wide range of organs and are key factors for the development of mammalian sensory organs such as the eye (Pax6, Pax2), nose (Pax6) and ears (Pax2, Pax8) [, ]. |
|
•
•
•
•
•
|
| HT Experiment |
|
| Experiment Type: |
transcription profiling by array |
| Study Type: |
WT vs. Mutant |
| Source: |
ArrayExpress |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Iwaya C |
| Year: |
2023 |
| Journal: |
J Dent Res |
| Title: |
Autophagy Plays a Crucial Role in Ameloblast Differentiation. |
| Volume: |
102 |
| Issue: |
9 |
| Pages: |
1047-1057 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Chalepakis G |
| Year: |
1995 |
| Journal: |
Gene |
| Title: |
Identification of DNA recognition sequences for the Pax3 paired domain. |
| Volume: |
162 |
| Issue: |
2 |
| Pages: |
267-70 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Line SR |
| Year: |
2003 |
| Journal: |
Evol Dev |
| Title: |
Variation of tooth number in mammalian dentition: connecting genetics, development, and evolution. |
| Volume: |
5 |
| Issue: |
3 |
| Pages: |
295-304 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Hilliard SA |
| Year: |
2005 |
| Journal: |
J Anat |
| Title: |
Regional regulation of palatal growth and patterning along the anterior-posterior axis in mice. |
| Volume: |
207 |
| Issue: |
5 |
| Pages: |
655-67 |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Piña JO |
| Year: |
2024 |
| Journal: |
J Dent Res |
| Title: |
Spatial Multi-omics Reveals the Role of the Wnt Modulator, Dkk2, in Palatogenesis'. |
|
|
| Pages: |
220345241256600 |
|
•
•
•
•
•
|
| Protein Domain |
| Type: |
Domain |
| Description: |
The paired domain is an approximately 126 amino acid DNA-binding domain, which is found in eukaryotic transcription regulatory proteins involved in embryogenesis. The domain was originally described as the 'paired box' in the Drosophila protein paired (prd) [, ]. The paired domain is generally located in the N-terminal part. An octapeptide []and/or a homeodomain can occur C-terminal to the paired domain, as well as a Pro-Ser-Thr-rich C terminus.Paired domain proteins can function as transcription repressors or activators. The paired domain contains three subdomains, which show functional differences in DNA-binding. The crystal structures of prd and Pax proteins show that the DNA-bound paired domain is bipartite, consisting of an N-terminal subdomain (PAI or NTD) and a C-terminal subdomain (RED or CTD), connected by a linker. PAI and RED each form a three-helical fold, with the most C-terminal helices comprising a helix-turn-helix (HTH) motif that binds the DNA major groove. In addition, the PAI subdomain encompasses an N-terminal β-turn andβ-hairpin, also named 'wing', participating in DNA-binding. The linker canbind into the DNA minor groove. Different Pax proteins and their alternativelyspliced isoforms use different (sub)domains for DNA-binding to mediate thespecificity of sequence recognition [, ].Some proteins known to contain a paired domain:Drosophila paired (prd), a segmentation pair-rule class protein.Drosophila gooseberry proximal (gsb-p) and gooseberry distal (gsb-d),segmentation polarity class proteins.Drosophila Pox-meso and Pox-neuro proteins.The Pax proteins:Mammalian protein Pax1, which may play a role in the formation of segmented structures in the embryo. In mouse, mutations in Pax1 produce the undulated phenotype, characterised by vertebral malformations along the entire rostro-caudal axis.Mammalian protein Pax2, a probable transcription factor that may have arole in kidney cell differentiation.Mammalian protein Pax3. Pax3 is expressed during early neurogenesis. In humans, defects in Pax3 are the cause of Waardenburg's syndrome (WS), anautosomal dominant combination of deafness and pigmentary disturbance.Mammalian protein Pax4 pays an important role in the differentiation and development of pancreatic islet beta cells. It binds to a common element in the glucagon, insulin and somatostatin promoters. In humans, it has been related to the rare, familial, clinically and genetically heterogeneous form of diabetes MODY (maturity-onset diabetes of the young).Mammalian protein Pax5, also known as B-cell specific transcription factor(BSAP). Pax5 is involved in the regulation of the CD19 gene. It plays animportant role in B-cell differentiation as well as neural development andspermatogenesis.Mammalian protein Pax6 (oculorhombin). Pax6 is a transcription factor withimportant functions in eye and nasal development. In Man, defects in Pax6are the cause of aniridia type II (AN2), an autosomal dominant disordercharacterised by complete or partial absence of the iris.Mammalian protein Pax7 is involved in the regulation of muscle stem cells proliferation, playing a role in myogenesis and muscle regeneration.Mammalian protein Pax8, required in thyroid development.Mammalian protein Pax9, required for normal development of thymus, parathyroid glands, ultimobranchial bodies, teeth, skeletal elements of skull and larynx as well as distal limbs. In man, defects in Pax9 cause oligodontia.Zebrafish protein Paired box protein Pax-2a, involved in the development of the midbrain/hindbrain boundary organizer and specification of neuronal cell fates.Xenopus laevis protein Paired box protein Pax-3-A, which promotes both hatching gland and neural crest cell fates, two of the cell populations that arise from the neural plate border. |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
446
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
361
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
212
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
384
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
361
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Publication |
| First Author: |
Eberhard D |
| Year: |
2000 |
| Journal: |
EMBO J |
| Title: |
Transcriptional repression by Pax5 (BSAP) through interaction with corepressors of the Groucho family. |
| Volume: |
19 |
| Issue: |
10 |
| Pages: |
2292-303 |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
49
 |
| Fragment?: |
true |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
157
 |
| Fragment?: |
false |
|
•
•
•
•
•
|
| Protein |
| Organism: |
Mus musculus/domesticus |
| Length: |
139
 |
| Fragment?: |
true |
|
•
•
•
•
•
|